NO15G01010, NO15G01010 (gene) Nannochloropsis oceanica

Overview
NameNO15G01010
Unique NameNO15G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2392
Alignment locationchr15:299919..302310 -

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA modification GTPase GTPBP3, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:299919..302310 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR031168G_TrmE
IPR018948GTP-bd_TrmE_N
IPR025867GTPase_MnmE_C_dom
IPR006073GTP_binding_domain
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
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BLAST of NO15G01010 vs. NCBI_GenBank
Match: EWM22489.1 (gtp binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 632.1 bits (1629), Expect = 2.000e-177
Identity = 340/460 (73.91%), Postives = 372/460 (80.87%), Query Frame = 0 
Query:  236 FPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGSLESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            FP PR+A LRKLYCP   E LDQA+VLW PGPRSFTGEDTVELHCHGSRAV+QGVT+ALLALD G  A VR AE GEFTERAF NGRMDLTEVEGLADLI+ADTAAQRKQAL+QMGG LR TYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPR   L EEMRRHLADG RGEVIR+GIRVAIVGPPNAGKST+LN LA+RPAAIVSP AGTTRDVVEVQL++ GLPVLVSDTAGIREAA D VEQEGIRRAREAA +AQLT++VLDA+  L  E  ASLAGVGPF+  APP+ L  VL A+                        R+ AG GG           +A+ VS STGEGVEEML GLQARLE + D+ G ++E+ E PVITRARHRVHVE+C+EALT+ + ++ LGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK
Sbjct:   12 FPAPRMASLRKLYCPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGEARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGQEAFASLAGVGPFSKDAPPEDLETVLRALR-----------------------RAGAGKGGTS--------TAAYLVSLSTGEGVEEMLAGLQARLEEVFDKDGTDDERAEAPVITRARHRVHVERCLEALTASMGEQGLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 440
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BLAST of NO15G01010 vs. NCBI_GenBank
Match: CBN78950.1 (TrmE, organellal GTPase involved in tRNA modification [Ectocarpus siliculosus])

HSP 1 Score: 459.9 bits (1182), Expect = 1.400e-125
Identity = 293/601 (48.75%), Postives = 357/601 (59.40%), Query Frame = 0 
Query:  192 DDTIFALSSGQ-GRAGVAVIRISGPRAEQCLAALTYSPAVKN-------------------------------PASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKG-AEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDV-DEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDAS---------GSLESEGLASLAGVGPFAAGAPPKALSE-------VLAAVEEKDGLLLVVNKMD-----------------------------------------AVAEGSDLAVRSLAGAGGVGNG------ARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            +DTIFAL++G  G AGVAV+RISGP + Q L ALT +  + +                                  FP  R A +R+LY P+T ++LD+ALVLW PGPRSFTGEDTVELH HGSRAVI GV  AL  +    G   VR AERGEFT+RA+GNGRMDLT VEGLADLI+ADTAAQRKQAL+QMGG LR  YE WR +LK CLAH EAVIDFGDDE DV  +AA+ A+ PR   L  E+ RHL DG RGE++RSG+RVAIVGPPNAGKS+LLNLLA RPAAIVSP+AGTTRDVVEVQ+++AGLPV +SDTAG+ +A  DE+E+EG+RRAR A + A L + V+DA+         G L  E   + A            A  E               D L++V NK D                                         A A GS      + G G    G       RS G    + +SC T EG++  +  L+A + +   +G  ++E    P+ITR RHR HVE C+ AL +      + LD+AAEELRIAS+ELGRITGAV VEE+LDVIFRDFCIGK
Sbjct:  195 EDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFAAMMPRVRGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRDVVEVQMDIAGLPVTLSDTAGLPKATDDEIEREGMRRARSAVDNAHLAIFVVDATNTDGATALLGKLREEAKEAEAEXXXXXXQRDDAAEMEGVFGSGXXXXXXXXXDDLIVVANKADLALTLLEGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAEAVGSRAGAAEMDGVGAATRGTEGDEEGRSGGGGRVWKLSCKTKEGLDGFMEHLEAEVRSRF-QGAADDES---PLITRRRHRQHVEACLLALRA-AQRPQMPLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: XP_008608099.1 (tRNA modification GTPase TrmE, partial [Saprolegnia diclina VS20] >EQC38507.1 tRNA modification GTPase TrmE, partial [Saprolegnia diclina VS20])

HSP 1 Score: 422.2 bits (1084), Expect = 3.200e-114
Identity = 243/503 (48.31%), Postives = 324/503 (64.41%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGSLESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS +GRAGVA++RISGP A+ CLA +T +PA+      P PR+A +RK+Y P T E+LD A+ L FP P+SFTGED VELH HGSR V+ GV QAL  +        RPAE GEFTERAF N +MDL +VEGLADL++++T AQRKQAL Q+ G +   +E WR  L  C+AH EA IDFGDDE DV +AAYDA+  +   L   +RRHLADG RGE++R+G++VAI+G PNAGKS+LLN+LA+R AAIVSPIAGTTRD+V V L L G PV ++DTAGIRE   D +EQEG+ RA +  E A + ++V+D   S++                  P+ L  + A        ++V+NK+       DLA R+L               A+   +SC+ G G++  L  LQ R++++     G  +  +  +ITR RHR H++ CV  L +FL       ++AAE+LR A   +GRI G +DVE++LDV+FRDFCIGK
Sbjct:   24 DTIYALSSAEGRAGVAIVRISGPMADACLAQMTTTPAL------PAPRLAAVRKIYHPQTKELLDSAMALRFPQPKSFTGEDVVELHLHGSRPVVTGVLQALSTIPT-----CRPAEAGEFTERAFENHKMDLMQVEGLADLLNSETEAQRKQALHQISGTVGTVFEDWRSTLVRCMAHAEANIDFGDDEDDVTDAAYDAVVDKVRALDASIRRHLADGRRGEILRNGVQVAILGSPNAGKSSLLNVLAQRDAAIVSPIAGTTRDIVTVPLNLGGYPVTLNDTAGIRE-TNDVIEQEGVSRAHKCREDAHIKILVIDIHSSVD------------------PQLLKLIDA------NTIVVLNKL-------DLATRTLP--------TLQVQAAAICPISCADGAGIDAFLKTLQQRVQSMF---AGVNDDVQGLLITRERHRTHLQDCVTHLEAFL-SHPYESELAAEDLRRAIHSIGRILGRIDVEDILDVLFRDFCIGK 471
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: ETI36231.1 (tRNA modification GTPase TrmE [Phytophthora parasitica P1569])

HSP 1 Score: 419.1 bits (1076), Expect = 2.700e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   67 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--ALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 524
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: ETI36232.1 (tRNA modification GTPase TrmE, variant [Phytophthora parasitica P1569] >ETL29923.1 tRNA modification GTPase TrmE [Phytophthora parasitica] >ETP06084.1 tRNA modification GTPase TrmE, variant [Phytophthora parasitica CJ01A1] >ETP34192.1 tRNA modification GTPase TrmE [Phytophthora parasitica P10297] >ETP34193.1 tRNA modification GTPase TrmE, variant [Phytophthora parasitica P10297])

HSP 1 Score: 419.1 bits (1076), Expect = 2.700e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   40 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--ALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: ETL83153.1 (tRNA modification GTPase TrmE [Phytophthora parasitica])

HSP 1 Score: 419.1 bits (1076), Expect = 2.700e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   66 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--ALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 523
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: ETP06083.1 (tRNA modification GTPase TrmE [Phytophthora parasitica CJ01A1])

HSP 1 Score: 419.1 bits (1076), Expect = 2.700e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   67 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--ALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 524
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: XP_008896085.1 (tRNA modification GTPase TrmE [Phytophthora parasitica INRA-310] >ETN18409.1 tRNA modification GTPase TrmE [Phytophthora parasitica INRA-310])

HSP 1 Score: 418.7 bits (1075), Expect = 3.500e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   66 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEPGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--TLITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 523
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: XP_008896086.1 (tRNA modification GTPase TrmE, variant [Phytophthora parasitica INRA-310] >ETN18410.1 tRNA modification GTPase TrmE, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 418.7 bits (1075), Expect = 3.500e-113
Identity = 252/505 (49.90%), Postives = 318/505 (62.97%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGS--LESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   +  L S    S    G FA                       V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   40 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEPGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHSGEYQSYLRHGAFA-----------------------VLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--TLITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497
[Close]
BLAST of NO15G01010 vs. NCBI_GenBank
Match: ETK76485.1 (tRNA modification GTPase TrmE [Phytophthora parasitica])

HSP 1 Score: 417.9 bits (1073), Expect = 6.000e-113
Identity = 248/503 (49.30%), Postives = 318/503 (63.22%), Query Frame = 0 
Query:  193 DTIFALSSGQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCPSTHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVGKGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQMGGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATLREEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSPIAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQAQLTLVVLDASGSLESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGLLLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGVEEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFLDDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 696
            DTI+ALSS  G+AGVAVIRISG +A+ CL  L  S A+      P PRVA LRKLY P T E LD ALVL FP P SFTGED VELH HGS AV+ GV +AL  +        R AE GEFTERAF N ++DL +VEGLADL+SA+T AQR QALRQ+ G +   YEGWR+ L  CLA+TEA+IDFGDDE DV +AAY+A   R   L + +R HLADG RGE++RSG++VAIVGPPNAGKS+LLN+LA+RPAAIVS IAGTTRDVV+V L +AG PV+VSDTAG+RE   D +E+EG+ RA++ A  A + +V++D   + +          G + +                + G   V+NK D V E    +V              S+ R     VSC+ G+ V+  +  L   ++  L+   G        +ITR RHR ++ +C+  L  FL D     ++AAE+LR A+  +GRI G +DVE+VLDV+F DFCIGK
Sbjct:   40 DTIYALSSAPGKAGVAVIRISGDQADSCLQQLGKSTAL------PKPRVAALRKLYHPKTKEHLDDALVLRFPHPNSFTGEDIVELHTHGSVAVVSGVLEALSHV-----PHCRAAEAGEFTERAFDNNKIDLVQVEGLADLLSAETEAQRSQALRQLSGDIGEIYEGWRDSLVKCLAYTEAMIDFGDDEDDVTDAAYEAAVDRVRALADSIRGHLADGRRGEILRSGVQVAIVGPPNAGKSSLLNILARRPAAIVSSIAGTTRDVVQVPLNIAGYPVIVSDTAGLRE-TEDIIEKEGVLRAQQCASDADICVVMMDIQNARQLHN-------GEYQSYL--------------RHGAFAVLNKSDQVDESQIASVLETFA---------SKQRDQLLVVSCANGDNVDVFVDKLATAVKEKLEVSAGGSSNG--ALITRERHRQNLVECLSCLDRFLADPYQS-EIAAEDLRRAAMAIGRILGRIDVEDVLDVLFADFCIGK 497
The following BLAST results are available for this feature:
BLAST of NO15G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22489.12.000e-17773.91gtp binding protein 3 [Nannochloropsis gaditana][more]
CBN78950.11.400e-12548.75TrmE, organellal GTPase involved in tRNA modificat... [more]
XP_008608099.13.200e-11448.31tRNA modification GTPase TrmE, partial [Saprolegni... [more]
ETI36231.12.700e-11349.90tRNA modification GTPase TrmE [Phytophthora parasi... [more]
ETI36232.12.700e-11349.90tRNA modification GTPase TrmE, variant [Phytophtho... [more]
ETL83153.12.700e-11349.90tRNA modification GTPase TrmE [Phytophthora parasi... [more]
ETP06083.12.700e-11349.90tRNA modification GTPase TrmE [Phytophthora parasi... [more]
XP_008896085.13.500e-11349.90tRNA modification GTPase TrmE [Phytophthora parasi... [more]
XP_008896086.13.500e-11349.90tRNA modification GTPase TrmE, variant [Phytophtho... [more]
ETK76485.16.000e-11349.30tRNA modification GTPase TrmE [Phytophthora parasi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001507NSK001507Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01010.1NO15G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g22gene7952Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01010.1NO15G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01010 ID=NO15G01010|Name=NO15G01010|organism=Nannochloropsis oceanica|type=gene|length=2392bp
TGAGTTGATAACAGGGCATGAAGAAGCGTCGAGGCTTCCTCGGCTTCCGG
GGGCGAAGCAATTAAATTAAACAGAGCGAGTACAACCAGATGCAGCACCA
CCCGGACCGCGACGTGCATGGCAACTGGCAGCGCATAACAACGCGAGGGG
AAGCCTTGTCACAGTGGATTGTGGGGAAAAGTTTGTTTTCTTTAGGCAGT
CCTCTTTCCCCCTGGGTTTCATCATCATTTTGCCAGACTCCGTGAGAGTC
TCATCGGGATGCGATGGTGATCGTCATCCTCTTTATCGCCTCTCCCCACT
CCTTCACGCCCTCCCTCACATGCTCACACCACAAAGGACGCAAGCAGCGA
CAAGCCAGAGAGGGAAGACGAGGATCATCAGCGTCTCTACTTTGCTCTCC
GCGCAAGGGTATGCGCCGCGGCAAACGGCCTCCCTACTCCCTTCTCCTTC
AGCTTGGCCTCCTTCCGACCATCATTCTACTACAACTTGACGTAGCACTT
GCGACGACCACCATGATGCCCGCAATAGCACCGTGTAGCCGGCATCTGGT
TGCTGTCGCTGCTTTTTACTCGCCCTTGGTCCTCCCAGCCACAAAGGTGC
GAATAAGAAGAACTGTGTCGAGCGCCAGGACCGTGATCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCCCCTTCTCTCCCTT
CTCACTGAGCAGCCGACTTTCCAGGCCTTCAATTCCCGCGCCACTCTCGT
CGTCTCTTTCCTCCGCCTCTAGCATCAATTCAAGAAAGCGAACGAGGAAT
CAAGTCAGCTGGACTGACGCGGTCGCCCCACACGTGGACGACACCATATT
TGCCCTCTCCTCGGGTCAAGGTCGCGCGGGCGTGGCAGTAATTCGCATTT
CCGGTCCCCGCGCCGAGCAATGCTTGGCAGCCCTCACTTATTCTCCTGCC
GTCAAGAATCCCGCATCTTTCCCCATGCCTCGTGTGGCTGGTTTGCGGAA
GCTTTATTGTCCTAGCACTCACGAGGTGTTGGACCAAGCCCTCGTCCTGT
GGTTTCCGGGCCCTCGTTCCTTCACGGGAGAAGACACTGTCGAACTTCAC
TGTCACGGCAGCCGGGCTGTAATCCAAGGTGTGACCCAAGCTTTGCTCGC
TCTGGATGTAGGGAAGGGAGCAGAGGTACGGCCGGCCGAGAGAGGAGAGT
TTACGGAACGGGCTTTCGGGAATGGAAGGATGGACCTGACAGAGGTAGAG
GGACTAGCGGATTTGATTTCTGCCGATACGGCGGCGCAACGTAAGCAGGC
CTTGAGGCAGATGGGGGGTGGTTTGAGAGTGACGTACGAGGGGTGGAGGG
AGGAACTGAAGGTGTGTTTGGCGCACACGGAGGCGGTGATTGATTTTGGG
GATGACGAGTTGGATGTGGACGAGGCTGCCTATGACGCCATTCGTCCTCG
GGCAGCGACGCTCCGAGAGGAAATGCGGCGGCACCTGGCAGACGGCAACC
GAGGGGAGGTCATCAGGTCGGGGATTCGGGTGGCAATAGTGGGCCCGCCG
AATGCGGGGAAGAGCACGCTTTTAAATCTGTTGGCGAAAAGGCCGGCTGC
CATTGTGTCTCCTATAGCGGGCACTACCCGAGATGTGGTTGAGGTGCAGT
TAGAGCTCGCAGGCCTGCCGGTACTGGTGAGCGATACGGCAGGAATTAGA
GAAGCGGCTGCGGATGAGGTTGAGCAGGAGGGGATTCGTCGGGCACGAGA
AGCAGCGGAGCAAGCCCAGCTGACGTTGGTGGTACTGGATGCCTCAGGCT
CGCTGGAGAGCGAAGGTCTGGCGTCATTGGCAGGGGTAGGCCCGTTTGCG
GCCGGAGCCCCCCCGAAGGCGTTGAGTGAGGTGCTGGCAGCGGTGGAGGA
GAAGGATGGCCTCCTGCTGGTGGTGAATAAGATGGACGCGGTCGCGGAGG
GAAGTGACTTGGCCGTGCGCTCCCTCGCTGGAGCAGGCGGGGTGGGGAAT
GGAGCGAGGTCAAGAGGAAGGGCGTCGGCATTCTTTGTGTCGTGCTCGAC
GGGGGAGGGGGTGGAAGAGATGTTGGGCGGGTTGCAGGCCAGGCTGGAGG
CTCTGCTTGACCGGGGGGGGGGAGAGGAGGAACAAAATGAGGTCCCTGTC
ATCACACGGGCGAGGCACCGCGTGCATGTTGAGAAGTGTGTGGAGGCCTT
GACTTCTTTCTTGGACGACCGGAATCTAGGGCTTGATGTGGCGGCGGAGG
AGTTGCGAATCGCGTCCACGGAGCTGGGGCGGATTACGGGGGCGGTGGAC
GTGGAAGAGGTCTTGGATGTCATTTTCAGGGACTTTTGCATTGGGAAGTA
AGGAGACAGAAATAGGCGGTAGAAATAAACATGAAAGAAACT
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protein sequence of NO15G01010.1

>NO15G01010.1-protein ID=NO15G01010.1-protein|Name=NO15G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp
MVIVILFIASPHSFTPSLTCSHHKGRKQRQAREGRRGSSASLLCSPRKGM
RRGKRPPYSLLLQLGLLPTIILLQLDVALATTTMMPAIAPCSRHLVAVAA
FYSPLVLPATKVRIRRTVSSARTVISSSSSSSSSSSSSSFSPFSPFSLSS
RLSRPSIPAPLSSSLSSASSINSRKRTRNQVSWTDAVAPHVDDTIFALSS
GQGRAGVAVIRISGPRAEQCLAALTYSPAVKNPASFPMPRVAGLRKLYCP
STHEVLDQALVLWFPGPRSFTGEDTVELHCHGSRAVIQGVTQALLALDVG
KGAEVRPAERGEFTERAFGNGRMDLTEVEGLADLISADTAAQRKQALRQM
GGGLRVTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRAATL
REEMRRHLADGNRGEVIRSGIRVAIVGPPNAGKSTLLNLLAKRPAAIVSP
IAGTTRDVVEVQLELAGLPVLVSDTAGIREAAADEVEQEGIRRAREAAEQ
AQLTLVVLDASGSLESEGLASLAGVGPFAAGAPPKALSEVLAAVEEKDGL
LLVVNKMDAVAEGSDLAVRSLAGAGGVGNGARSRGRASAFFVSCSTGEGV
EEMLGGLQARLEALLDRGGGEEEQNEVPVITRARHRVHVEKCVEALTSFL
DDRNLGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK*
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Synonyms
Publications