NO15G00490.1, NO15G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00490.1
Unique NameNO15G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3082
Alignment locationchr15:165501..168866 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:165501..168866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00490.1 vs.
Match: EWM23535.1 (hypothetical protein Naga_100416g5 [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 6.800e-97
Identity = 200/350 (57.14%), Postives = 240/350 (68.57%), Query Frame = 0 
Query:   23 SIPSSEERSTTPVGTTAAS-------VSSTTTIGGGILSSSSSSSLQPPRYQRPPKAEIDYASALPDEMLVRILLFLDIDSGVTSTLTSTRWRPLFTERVCQAHCERVYLDQSRTKRLNPARFNGSWKKMLFTRPRVRTNGLYFLLSSYIKKPMKDMWTEITPGSILEVKYYRYLRFLPNGRLVYALLYLPPSEAVRLFKDWGSAHPSSFMSSSSSLPSSSSAACVRAQVER---REGGREGGVTT--------SNKKKELSEGVYWTHKKEIYCQIRTSYSLINFRLEIGERGAGREGGR-------GGKFTELAMEEHSSVPYNDPTATPVAHKPAYAPFMFHRVSMW 348
            +IP  EE +  PV              SS T+   G L+  S   + PPRY R PK EIDYASA+PDE+L RIL F+DID+GV ST++S RWRPLF ER+CQAHCER+YLDQ+  KRLNPARF GSWK ML TRPRVRTNG YFLLSSYIKKP+KDMWTEITPG+ILEV+YYRYLRFLP GRLVYALLYLPP EAV LFK++  AH S+   S+ +  SSSSA        R   RE GR   + T        ++KKKEL+EG++W HK  + C+I+T YS I+F+ +I  R  G EGGR        G FT L MEEH+SV  ND T TP+ HKPAYAP +F++V +W
Sbjct:   11 AIPDPEEAAFLPVDVHVVPKRASHLPTSSHTSSTNGALAFGS---VHPPRYLRAPKGEIDYASAMPDEVLHRILTFVDIDTGVASTMSSQRWRPLFDERICQAHCERIYLDQAHVKRLNPARFQGSWKAMLQTRPRVRTNGFYFLLSSYIKKPIKDMWTEITPGTILEVRYYRYLRFLPGGRLVYALLYLPPPEAVSLFKEY-EAHVSNLPPSTLTSTSSSSALRGWGPPRRDRIRENGRTASINTTGNPPISANSKKKELNEGLFWIHKGAVICEIQTPYSRIHFQFKISAREGGLEGGREGGHEGGRGNFTALMMEEHTSVALNDSTGTPIPHKPAYAPLLFYKVPVW 356
The following BLAST results are available for this feature:
BLAST of NO15G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23535.16.800e-9757.14hypothetical protein Naga_100416g5 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00490NO15G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00490.1NO15G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00490.1.cds1NO15G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00490.1.cds2NO15G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00490.1.cds3NO15G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00490.1 ID=NO15G00490.1|Name=NO15G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3082bp
GCAAGAAAGCATATTTTGTTTTATTTTCAAAAATATTTTCCCTACAAGTG
GTCTAAGCTCAAAGAATCCCTTGCGCTTTTGTTTCATATAATTATACTTC
TTTCGGTCACTCCATGGACTCAGTGTCTCTACGGCTACACACACTACAAG
TACACCCCCTCTTTCCCTCACTCATTTCTTCTACTTGCTCTTCTTGTCTT
CCTCCTCCGTCCCGTCCCTCACGACCGCCGCGCAAGTCGCGCGAACCAAT
CCCTCCAGCTTGGGTTTGTTAGCGCCCGAAAACCGAATCTCTTCCTCTAG
GCCATCCTTAGGCCTGAGGAATACAAAGGTGGGCATGGAACGGATGGCAA
AAGCTTGGGCGACGTCGTCAGCTTCGTCAATGTCGACCTTCAGAAAGGCG
GCATTGTACTGCTGGCTGTGAGAGGGAGAGAGGAGTGTTAGCAACGGAAC
ATGACAGAAAAATAAAATCATCGTTAATCGACGGAGAGGATAGCTTAAGA
GCACCAAATCAATAATCTTTCACTCTGTCGGTCCGGTACATTTATATATA
TACATGCATACATACCTCAATTCCTCAAAGACAGGCGCAATCGTCCGGCA
TGGCCCACACCAGGTGGCTGTGAAATCAATCACCACCGGTACGCCCGCCT
CTCTAGCCTGTGCCCGGATCTTGGCCAAGTGGGCGACGTCAGTGATGTGG
ACGATGGAGGAATCAGTCCACGTGCGCTTATTCACCGCGGGCGGGCGGGG
CATGGCGGCCAAGGCTTGCTCCTCTGGGGAACCGGCACCTAGACGATCTT
TAAACCAAGATAATGCCACCCGGAAGAGGACGAAAAGGAAAGGGATAAGC
GCGCCGAGAGGCACACAGAAGGGACCGATGCATATGTTCGTCATGGTGAG
GAGTCGAGACTGTATACTAGGGAGCGAGGTGTGAAATAGAGGTGAGAGAG
ATGTCGAGTCCGCTGTAGACCGTGATGTGGCTTCGGCATGGAATGAACAT
CCAAGAGGTACGCCATGTGGGAATGGAGGTGGGGGTGCTGGTGGTGAGCC
TGGAGGACAGCCCTGCGGGCGGGGGGCATGCATGAATGTGCATTATATGT
GTCGGAGAAAGGAGGCAGAGGGGAGCTTTGTGCTGTCAAGCAGAAGCCAC
GCCGCCCGTGCCGCTTGGGAGGGGGTATCAGGTGCGTAGATGACTTTTGT
CCCTGCCGCTGTCTGTGGGTAGCGTGCAAGATTGTCGTGGGGATAGAGTA
TGGAGAGCTCGAGATGAAAGAGCCGGGGAGGCGGGGGTGCAATGACTGAG
ACTCTGAGACAAAGCAAAATGCCTCTCAGTATCCGTCCACGCACTAAAAC
ACCACCACTGCTGCATACTTCTCATGTAGTACTTGCTACCTGCGTGCCCG
GGGGGTTGACACCAAAGTCAATGAAATGCGCGTGTACTAGCAACTCATGA
CTTTTTGGTTTGAGACGATGCGCTTCTCAGCACAGCTCGACAACGTATAC
CAATCAAGTCATGCATGCCCTCCTTTTGGCCGCCCCTGGCCTTGCACTAT
GAACGCCGCCACTTACTGCTCCTCCGCACATGCATACACAACACCCACAG
GACCGGCTGTTAGAATCTTGTCGTCTGGCCGCCTGTGCTGGGGTTCCTGG
TTGTCGTCACACCTAGCAATACTATAAACTATACTTCCCCCGCCTCCCTC
CCTGTGAGTCATCAGCATCAGGCATGGACAAAAAGGACAAGCAACGGCAG
TCCTCCTCTTCTTCGTCCTCGTCCTCTTTTCCCTCCTCCTCCATTCCCTC
TTCGGAAGAAAGATCGACAACCCCCGTCGGCACGACGGCCGCATCAGTGT
CCTCCACTACCACGATCGGAGGCGGCATCCTATCCTCTTCCTCTTCCTCG
TCCTTGCAGCCCCCACGCTACCAACGACCCCCTAAGGCCGAAATAGACTA
TGCCTCGGCCTTGCCAGACGAAATGCTGGTGCGGATCTTGCTGTTTCTGG
ACATTGATTCAGGGGTGACATCTACTCTGACTTCCACGCGGTGGCGGCCA
TTATTCACTGAACGGGTTTGTCAGGCACATTGCGAGAGAGTGTATCTGGA
CCAGTCCCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGGCAGCTGGA
AGAAGATGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCTTGTATTTC
CTCCTGTCGAGCTACATTAAGAAACCGATGAAGGACATGTGGACCGAGAT
CACCCCGGGCTCCATTCTGGAAGTCAAGTACTATCGCTACCTGCGCTTCC
TCCCCAACGGACGTCTGGTCTACGCCTTGCTCTACCTCCCTCCCTCCGAA
GCCGTGCGACTATTCAAAGATTGGGGATCAGCGCACCCTTCCTCCTTCAT
GTCCTCGTCCTCGTCCTTACCCTCGTCCTCCTCCGCGGCCTGTGTGCGAG
CGCAGGTGGAAAGGAGGGAGGGTGGGAGGGAGGGAGGGGTGACCACCAGC
AATAAGAAGAAGGAATTGAGCGAGGGTGTGTATTGGACGCACAAGAAAGA
GATTTATTGTCAGATTCGGACATCTTACTCCTTGATTAATTTCCGGTTGG
AAATCGGAGAGAGGGGGGCAGGGAGGGAGGGAGGGAGGGGGGGGAAGTTT
ACGGAGCTGGCGATGGAGGAGCATTCGAGCGTGCCATACAATGACCCGAC
GGCGACACCAGTTGCACACAAGCCGGCGTATGCCCCCTTCATGTTTCACA
GGGTCTCCATGTGGTAAATAAGAGGGGTGAAGGGGGGAAGGGGAGGGAGG
GAGGGAGAGAGGACTGTGTATTAGATCAGTAAGAACTGAAATAGGCACTA
AGTTAGTGGCCGGGGATGGAAAGGAGGGGCAGGATCGTACACACGAGGAA
CGAGAATCTTCAAAGAAAAAAAATGTTTACTGTGGGGACATGGAAGAAGT
GGAAGATGAGGGAGGAAAACTATTGAATTCAAATTATGTGTCTGTTCGTG
GGAAAGCGAGATGAGAGCAGGCGAGTGAAAGAAAATAACGTGAAAGCTGA
GATCAAAGGAAATGTAAACTTCGGAGTGCGGG
back to top

protein sequence of NO15G00490.1

>NO15G00490.1-protein ID=NO15G00490.1-protein|Name=NO15G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MDKKDKQRQSSSSSSSSSFPSSSIPSSEERSTTPVGTTAASVSSTTTIGG
GILSSSSSSSLQPPRYQRPPKAEIDYASALPDEMLVRILLFLDIDSGVTS
TLTSTRWRPLFTERVCQAHCERVYLDQSRTKRLNPARFNGSWKKMLFTRP
RVRTNGLYFLLSSYIKKPMKDMWTEITPGSILEVKYYRYLRFLPNGRLVY
ALLYLPPSEAVRLFKDWGSAHPSSFMSSSSSLPSSSSAACVRAQVERREG
GREGGVTTSNKKKELSEGVYWTHKKEIYCQIRTSYSLINFRLEIGERGAG
REGGRGGKFTELAMEEHSSVPYNDPTATPVAHKPAYAPFMFHRVSMW*
back to top

mRNA from alignment at chr15:165501..168866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00490.1 ID=NO15G00490.1|Name=NO15G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3366bp|location=Sequence derived from alignment at chr15:165501..168866- (Nannochloropsis oceanica)
GCAAGAAAGCATATTTTGTTTTATTTTCAAAAATATTTTCCCTACAAGTG
GTCTAAGCTCAAAGAATCCCTTGCGCTTTTGTTTCATATAATTATACTTC
TTTCGGTCACTCCATGGACTCAGTGTCTCTACGGCTACACACACTACAAG
TACACCCCCTCTTTCCCTCACTCATTTCTTCTACTTGCTCTTCTTGTCTT
CCTCCTCCGTCCCGTCCCTCACGACCGCCGCGCAAGTCGCGCGAACCAAT
CCCTCCAGCTTGGGTTTGTTAGCGCCCGAAAACCGAATCTCTTCCTCTAG
GCCATCCTTAGGCCTGAGGAATACAAAGGTGGGCATGGAACGGATGGCAA
AAGCTTGGGCGACGTCGTCAGCTTCGTCAATGTCGACCTTCAGAAAGGCG
GCATTGTACTGCTGGCTGTGAGAGGGAGAGAGGAGTGTTAGCAACGGAAC
ATGACAGAAAAATAAAATCATCGTTAATCGACGGAGAGGATAGCTTAAGA
GCACCAAATCAATAATCTTTCACTCTGTCGGTCCGGTACATTTATATATA
TACATGCATACATACCTCAATTCCTCAAAGACAGGCGCAATCGTCCGGCA
TGGCCCACACCAGGTGGCTGTGAAATCAATCACCACCGGTACGCCCGCCT
CTCTAGCCTGTGCCCGGATCTTGGCCAAGTGGGCGACGTCAGTGATGTGG
ACGATGGAGGAATCAGTCCACGTGCGCTTATTCACCGCGGGCGGGCGGGG
CATGGCGGCCAAGGCTTGCTCCTCTGGGGAACCGGCACCTAGACGATCTT
TAAACCAAGATAATGCCACCCGGAAGAGGACGAAAAGGAAAGGGATAAGC
GCGCCGAGAGGCACACAGAAGGGACCGATGCATATGTTCGTCATGGTGAG
GAGTCGAGACTGTATACTAGGGAGCGAGGTGTGAAATAGAGGTGAGAGAG
ATGTCGAGTCCGCTGTAGACCGTGATGTGGCTTCGGCATGGAATGAACAT
CCAAGAGGTACGCCATGTGGGAATGGAGGTGGGGGTGCTGGTGGTGAGCC
TGGAGGACAGCCCTGCGGGCGGGGGGCATGCATGAATGTGCATTATATGT
GTCGGAGAAAGGAGGCAGAGGGGAGCTTTGTGCTGTCAAGCAGAAGCCAC
GCCGCCCGTGCCGCTTGGGAGGGGGTATCAGGTGCGTAGATGACTTTTGT
CCCTGCCGCTGTCTGTGGGTAGCGTGCAAGATTGTCGTGGGGATAGAGTA
TGGAGAGCTCGAGATGAAAGAGCCGGGGAGGCGGGGGTGCAATGACTGAG
ACTCTGAGACAAAGCAAAATGCCTCTCAGTATCCGTCCACGCACTAAAAC
ACCACCACTGCTGCATACTTCTCATGTAGTACTTGCTACCTGCGTGCCCG
GGGGGTTGACACCAAAGTCAATGAAATGCGCGTGTACTAGCAACTCATGA
CTTTTTGGTTTGAGACGATGCGCTTCTCAGCACAGCTCGACAACGTATAC
CAATCAAGTCATGCATGCCCTCCTTTTGGCCGCCCCTGGCCTTGCACTAT
GAACGCCGCCACTTACTGCTCCTCCGCACATGCATACACAACACCCACAG
GACCGGCTGTTAGAATCTTGTCGTCTGGCCGCCTGTGCTGGGGTTCCTGG
TTGTCGTCACACCTAGCAATACTATAAACTATACTTCCCCCGCCTCCCTC
CCTGTGAGTCATCAGCATCAGGCATGGACAAAAAGGACAAGCAACGGCAG
TCCTCCTCTTCTTCGTCCTCGTCCTCTTTTCCCTCCTCCTCCATTCCCTC
TTCGGAAGAAAGATCGACAACCCCCGTCGGCACGACGGCCGCATCAGTGT
CCTCCACTACCACGATCGGAGGCGGCATCCTATCCTCTTCCTCTTCCTCG
TCCTTGCAGCCCCCACGCTACCAACGACCCCCTAAGGCCGAAATAGACTA
TGCCTCGGCCTTGCCAGACGAAATGCTGGTGCGGATCTTGCTGTTTCTGG
ACATTGATTCAGGGGTGACATCTACTCTGACTTCCACGCGGTGGCGGCCA
TTATTCACTGAACGGGTTTGTCAGGCACATTGCGAGAGAGTGTATCTGGA
CCAGGTAGCGAGAGAGGGAGGGAAGGAGGGAGGAAGGTAGGGAAGGAGGA
CAGTGTGCAGCGAGGAAATAGTGTTCTATGTTCACTTGTCTACGGCTGTG
ACGCTCACACACCTTCCTTCCCTCCCTCCCTCCCTCGCTCGCTCGCCGCA
GTCCCGCACCAAACGCCTCAACCCCGCCCGCTTTAACGGCAGCTGGAAGA
AGATGCTTTTCACCCGCCCTAGAGTAAGGACCAATGGCTTGTATTTCCTC
CTGTCGAGCTACATTAAGAAACCGATGAAGGTACCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTGACCCCTTCCTATGAGCAACGTACCACTCAATCCGT
TCCTTTCCCGCACTTCATCTCCTCACTCCTCCCTCTCTCCCTCCCTCCCT
CTCTCCCTCCTTGATAGGACATGTGGACCGAGATCACCCCGGGCTCCATT
CTGGAAGTCAAGTACTATCGCTACCTGCGCTTCCTCCCCAACGGACGTCT
GGTCTACGCCTTGCTCTACCTCCCTCCCTCCGAAGCCGTGCGACTATTCA
AAGATTGGGGATCAGCGCACCCTTCCTCCTTCATGTCCTCGTCCTCGTCC
TTACCCTCGTCCTCCTCCGCGGCCTGTGTGCGAGCGCAGGTGGAAAGGAG
GGAGGGTGGGAGGGAGGGAGGGGTGACCACCAGCAATAAGAAGAAGGAAT
TGAGCGAGGGTGTGTATTGGACGCACAAGAAAGAGATTTATTGTCAGATT
CGGACATCTTACTCCTTGATTAATTTCCGGTTGGAAATCGGAGAGAGGGG
GGCAGGGAGGGAGGGAGGGAGGGGGGGGAAGTTTACGGAGCTGGCGATGG
AGGAGCATTCGAGCGTGCCATACAATGACCCGACGGCGACACCAGTTGCA
CACAAGCCGGCGTATGCCCCCTTCATGTTTCACAGGGTCTCCATGTGGTA
AATAAGAGGGGTGAAGGGGGGAAGGGGAGGGAGGGAGGGAGAGAGGACTG
TGTATTAGATCAGTAAGAACTGAAATAGGCACTAAGTTAGTGGCCGGGGA
TGGAAAGGAGGGGCAGGATCGTACACACGAGGAACGAGAATCTTCAAAGA
AAAAAAATGTTTACTGTGGGGACATGGAAGAAGTGGAAGATGAGGGAGGA
AAACTATTGAATTCAAATTATGTGTCTGTTCGTGGGAAAGCGAGATGAGA
GCAGGCGAGTGAAAGAAAATAACGTGAAAGCTGAGATCAAAGGAAATGTA
AACTTCGGAGTGCGGG
back to top

Coding sequence (CDS) from alignment at chr15:165501..168866-

>NO15G00490.1 ID=NO15G00490.1|Name=NO15G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr15:165501..168866- (Nannochloropsis oceanica)
ATGGACAAAAAGGACAAGCAACGGCAGTCCTCCTCTTCTTCGTCCTCGTC
CTCTTTTCCCTCCTCCTCCATTCCCTCTTCGGAAGAAAGATCGACAACCC
CCGTCGGCACGACGGCCGCATCAGTGTCCTCCACTACCACGATCGGAGGC
GGCATCCTATCCTCTTCCTCTTCCTCGTCCTTGCAGCCCCCACGCTACCA
ACGACCCCCTAAGGCCGAAATAGACTATGCCTCGGCCTTGCCAGACGAAA
TGCTGGTGCGGATCTTGCTGTTTCTGGACATTGATTCAGGGGTGACATCT
ACTCTGACTTCCACGCGGTGGCGGCCATTATTCACTGAACGGGTTTGTCA
GGCACATTGCGAGAGAGTGTATCTGGACCAGTCCCGCACCAAACGCCTCA
ACCCCGCCCGCTTTAACGGCAGCTGGAAGAAGATGCTTTTCACCCGCCCT
AGAGTAAGGACCAATGGCTTGTATTTCCTCCTGTCGAGCTACATTAAGAA
ACCGATGAAGGACATGTGGACCGAGATCACCCCGGGCTCCATTCTGGAAG
TCAAGTACTATCGCTACCTGCGCTTCCTCCCCAACGGACGTCTGGTCTAC
GCCTTGCTCTACCTCCCTCCCTCCGAAGCCGTGCGACTATTCAAAGATTG
GGGATCAGCGCACCCTTCCTCCTTCATGTCCTCGTCCTCGTCCTTACCCT
CGTCCTCCTCCGCGGCCTGTGTGCGAGCGCAGGTGGAAAGGAGGGAGGGT
GGGAGGGAGGGAGGGGTGACCACCAGCAATAAGAAGAAGGAATTGAGCGA
GGGTGTGTATTGGACGCACAAGAAAGAGATTTATTGTCAGATTCGGACAT
CTTACTCCTTGATTAATTTCCGGTTGGAAATCGGAGAGAGGGGGGCAGGG
AGGGAGGGAGGGAGGGGGGGGAAGTTTACGGAGCTGGCGATGGAGGAGCA
TTCGAGCGTGCCATACAATGACCCGACGGCGACACCAGTTGCACACAAGC
CGGCGTATGCCCCCTTCATGTTTCACAGGGTCTCCATGTGGTAA
back to top
Synonyms
Publications