NO15G00440.1, NO15G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00440.1
Unique NameNO15G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1540
Alignment locationchr15:151557..153596 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:151557..153596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO15G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00440NO15G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00440.1NO15G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00440.1.cds1NO15G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00440.1.cds2NO15G00440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00440.1.cds3NO15G00440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00440.1 ID=NO15G00440.1|Name=NO15G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
GTTTCCTCGAGGTCTAGCAGCCTTTCATGCATCGTACCATTTAGTGCGCA
GCGCATCAAAGGGACTTCATGGTATATTGCCTTGACTGGTGCTTCACAGC
GTAGGCTATGGGCGCTTGAGTGACTGGTGGGGGAGCGAAATAAACACTCA
TCATTTTCTTCTTTCTTCCCCGTCCTTCCCACTCATGCACAGACATGTCA
ACAACACAAGCAAGCGACAATTCCTGTCAACCTGGGAGCAACCTTGTCAA
CGAGGGGCAAGAGTTTGACTCAGACTCAGACTCTGACCCTGGCACCAATT
CCCCGGACGCGGACACGAATGGCTCGAGTGACCAGGCAGCACCCCTGGTC
CATGGGGACCACGGGGCGGGGGTGGGGAAGAAACGCGCCACCAGGAAGCA
GACCACCAAAGCTTCCCCATTCCAAAAATTCCACTCCAACCCTTACATCT
TCGCCCTGTTTTTATATCTGATGGTGGATGGTCCCATTGACCTCACAGAT
GAAACCTTCGAGCATGGCCGAGTGGATTGGTTTTCACCCTTTGATCTAAA
CGGCCGGCGCAACATCGCCCTCCTCAAGTCCTGTGTCCAAAGACTACAGG
CCCTAATCAAAAAACACTACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTC
ACGGCGGACAAATGCGGGTGATGAGGTAAATGGTAGGAGAGCGGGAGAGA
AAGTTATGGGTCAAGAACCACAGCGTGAGCCATTGGGAAGAGTAGTACGT
GTAAGATAGTCAATATTGGCCATGAGTGCTTACCCTTCCAACTCGATAAC
TGTTTCGATGCGGAGTCTGGGGGGCATGTACCACACTTGTTCCTTGGTAA
ACCGGTGCATTTTCAGGAATAAATCATCGGTAAAGTCTTCGAAGAGCTGC
GGCAATGTACGAGGGCGGTTTGGATCGAGATACCAAGACGTACGGGGAAA
CTGGTTGCCGCCAATGACGTACATGTGCATGAAGAGTAAGCAGAGTACGA
GGTTGTTGTCATATTCCACATACATCATGTGTTGGTCCATGTTGCGCAAA
CCAGCCCCACTCTGCCTTCGCAGACACTTCTTCAAGACAACGCTGTGTAT
GTAAAAGTTGTTGTGGCTATGTATAGACTTGCTATCACTATTTAAGACTT
GCTTTCGCTATTTACGGGTGCTTCGCTATTTAGAGCATATCCGGCCGGTT
GAACACACACCTGGGCCAACAGTTAAATAGAGCTCTTAAATAATTATTTA
AGAGTGGCTGCTATTTACGGGTGCGGAGTTGAACACACCCCCTAATGGAC
GGTGTACAATCCACACGGCATGGACGTGATCTTTGTGAAGCGTCCTGAAC
ATTTGTGCGGAAGCGTTTTCGTTTTCTTATGTTTGTAGGGCGGGTGATTT
GAGTTTGAAGAGAAGAAATGTAGGATGAAAAGCCACAGAGAGAGCGAAAA
GCGGTCGCAGCCGTTTTGCCAGTCATACAGTATCTGCAGAATCTGGGAGA
GGGGGTTCAGGTGGAATGAGTTCTGGGGTTTATACTGAGG
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protein sequence of NO15G00440.1

>NO15G00440.1-protein ID=NO15G00440.1-protein|Name=NO15G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSTTQASDNSCQPGSNLVNEGQEFDSDSDSDPGTNSPDADTNGSSDQAAP
LVHGDHGAGVGKKRATRKQTTKASPFQKFHSNPYIFALFLYLMVDGPIDL
TDETFEHGRVDWFSPFDLNGRRNIALLKSCVQRLQALIKKHYPAFVPAFA
GFTADKCG*
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mRNA from alignment at chr15:151557..153596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00440.1 ID=NO15G00440.1|Name=NO15G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp|location=Sequence derived from alignment at chr15:151557..153596+ (Nannochloropsis oceanica)
GTTTCCTCGAGGTCTAGCAGCCTTTCATGCATCGTACCATTTAGTGCGCA
GCGCATCAAAGGGACTTCATGGTATATTGCCTTGACTGGTGCTTCACAGC
GTAGGCTATGGGCGCTTGAGTGACTGGTGGGGGAGCGAAATAAACACTCA
TCATTTTCTTCTTTCTTCCCCGTCCTTCCCACTCATGCACAGACATGTCA
ACAACACAAGCAAGCGACAATTCCTGTCAACCTGGGAGCAACCTTGTCAA
CGAGGGGCAAGAGTTTGACTCAGACTCAGACTCTGACCCTGGCACCAATT
CCCCGGACGCGGACACGAATGGCTCGAGTGACCAGGCAGCACCCCTGGTC
CATGGGGACCACGGGGCGGGGGTGGGGAAGAAACGCGCCACCAGGAAGCA
GACCACCAAAGCTTCCCCATTCCAAAAATTCCACTCCAACCCTTACATCT
TCGCCCTGTTTTTATATCTGAGTAAGTGATGATGTGGCTGTGTGAGTGAC
ATGTCTGTGCATTTGTGTTTCCATTCTTAACTCACACAACTACCCCACCA
CATCCTCAGTGGTGGATGGTCCCATTGACCTCACAGATGAAACCTTCGAG
CATGGCCGAGTGGATTGGTTTTCACCCTTTGATCTAAACGGCCGGCGCAA
CATCGCCCTCCTCAAGTCCTGTGTCCAAAGACTACAGGCCCTAATCAAAA
AACACTACCCTGCTTTTGTGCCTGCCTTCGCTGGGTTCACGGCGGACAAA
TGTAAGACCTACACTGACCAAATGTGGGTGAAGAGAAGCGTCTGTAAGAG
GGACGATGGAAAAATTGTACGGCTATGACAGAACACAAATTACGAAATGG
ACCAACTACATGCTAGAGTACGTGTTCGATCAATGGGCCTTCCTTCTGGA
CTTAAACGAGGAACGTTTGCCCAACAATGCACAGTACTCGTTCATCTTGT
TTGACAAACGTTCCTCGTTTAAGTCCAGAAGGAAGGCCCATTGATCGAAC
ACGTACTCTAGCATGTAGTTGGTCCATTTCGTAATTTGTGTTCTGTCATA
GCCGTACAATTTTTCCATCGTCCCTCTTACAGAGTGAGGATGAGCATTGC
GGCCAAGAAGCATCACAAAGACCATTCCTCCACACATTTTTGGCATTCTA
TCCATGTTGTTAGGCGGGTGATGAGGTAAATGGTAGGAGAGCGGGAGAGA
AAGTTATGGGTCAAGAACCACAGCGTGAGCCATTGGGAAGAGTAGTACGT
GTAAGATAGTCAATATTGGCCATGAGTGCTTACCCTTCCAACTCGATAAC
TGTTTCGATGCGGAGTCTGGGGGGCATGTACCACACTTGTTCCTTGGTAA
ACCGGTGCATTTTCAGGAATAAATCATCGGTAAAGTCTTCGAAGAGCTGC
GGCAATGTACGAGGGCGGTTTGGATCGAGATACCAAGACGTACGGGGAAA
CTGGTTGCCGCCAATGACGTACATGTGCATGAAGAGTAAGCAGAGTACGA
GGTTGTTGTCATATTCCACATACATCATGTGTTGGTCCATGTTGCGCAAA
CCAGCCCCACTCTGCCTTCGCAGACACTTCTTCAAGACAACGCTGTGTAT
GTAAAAGTTGTTGTGGCTATGTATAGACTTGCTATCACTATTTAAGACTT
GCTTTCGCTATTTACGGGTGCTTCGCTATTTAGAGCATATCCGGCCGGTT
GAACACACACCTGGGCCAACAGTTAAATAGAGCTCTTAAATAATTATTTA
AGAGTGGCTGCTATTTACGGGTGCGGAGTTGAACACACCCCCTAATGGAC
GGTGTACAATCCACACGGCATGGACGTGATCTTTGTGAAGCGTCCTGAAC
ATTTGTGCGGAAGCGTTTTCGTTTTCTTATGTTTGTAGGGCGGGTGATTT
GAGTTTGAAGAGAAGAAATGTAGGATGAAAAGCCACAGAGAGAGCGAAAA
GCGGTCGCAGCCGTTTTGCCAGTCATACAGTATCTGCAGAATCTGGGAGA
GGGGGTTCAGGTGGAATGAGTTCTGGGGTTTATACTGAGG
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Coding sequence (CDS) from alignment at chr15:151557..153596+

>NO15G00440.1 ID=NO15G00440.1|Name=NO15G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr15:151557..153596+ (Nannochloropsis oceanica)
ATGTCAACAACACAAGCAAGCGACAATTCCTGTCAACCTGGGAGCAACCT
TGTCAACGAGGGGCAAGAGTTTGACTCAGACTCAGACTCTGACCCTGGCA
CCAATTCCCCGGACGCGGACACGAATGGCTCGAGTGACCAGGCAGCACCC
CTGGTCCATGGGGACCACGGGGCGGGGGTGGGGAAGAAACGCGCCACCAG
GAAGCAGACCACCAAAGCTTCCCCATTCCAAAAATTCCACTCCAACCCTT
ACATCTTCGCCCTGTTTTTATATCTGATGGTGGATGGTCCCATTGACCTC
ACAGATGAAACCTTCGAGCATGGCCGAGTGGATTGGTTTTCACCCTTTGA
TCTAAACGGCCGGCGCAACATCGCCCTCCTCAAGTCCTGTGTCCAAAGAC
TACAGGCCCTAATCAAAAAACACTACCCTGCTTTTGTGCCTGCCTTCGCT
GGGTTCACGGCGGACAAATGCGGGTGA
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Synonyms
Publications