NO15G00310.1, NO15G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00310.1
Unique NameNO15G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr15:96516..98708 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:96516..98708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00310.1 vs.
Match: XP_005852488.1 (hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526]; EKU23345.1 hypothetical protein NGA_0717900 [Nannochloropsis gaditana CCMP526]; EWM20802.1 Rubredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 246.9 bits (629), Expect = 4.000e-62
Identity = 124/150 (82.67%), Postives = 137/150 (91.33%), Query Frame = 0 
Query:    1 MARHATSSLLTLLCLALLAVSSFAFMPMRPSLSLSRMKAASLSAPSSRGTRNGRSKGLTAMDMQYWEGEWVCADCGYIYNEQDCGGMRFEDQKRGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILLFSIVGGLAVIGFGIYAALSGI 151
            MARHA  ++LT +CL L+A+SS AFMP+RP+LSLS+M+AA+LS PSSR   +GRSKGLTAM  +YWEGEWVCADCGYIYNE DCGGMRFEDQK GFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPIL+FSIVGGLAVIGFGIYAALSGI
Sbjct:    1 MARHAPFTVLTFVCLVLMALSSVAFMPVRPALSLSKMRAATLSGPSSRSP-SGRSKGLTAMSGKYWEGEWVCADCGYIYNEADCGGMRFEDQKTGFKCPQCSAPRRRFAKKVGDKIGVTNDGGDAPILVFSIVGGLAVIGFGIYAALSGI 149
The following BLAST results are available for this feature:
BLAST of NO15G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852488.14.000e-6282.67hypothetical protein NGA_0717900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00310NO15G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00310.1NO15G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00310.1.cds1NO15G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00310.1.cds2NO15G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00310.1.cds3NO15G00310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00310.1 ID=NO15G00310.1|Name=NO15G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
TTTTTTGAGGAAGGGAAGGAGGGAGGGAGAAAGGGAGGAATGGAGGGAGG
GAGGGCGGGTTGAGGGGAGGTTGCCACATAGATGGGGGTCACGGAATATA
AAGCCTGGAAGGGAGCGCATAAATGTAGGCAACTGAATACAAAGCATCGA
CACAAACGTCCACAACCTTGTCGTTGAGGAGTAATAGCTGACACAGGGCC
TCAATTCTCCCTCCCTCCCGTCCGCCTTCTTCCCTTACCTCGCTCAGCTG
GGTCTTGAGCTGATTGAGCTGTTCAATGGAAAGCTTGCTGAGGTCGATTT
CTCGCTCGCCCACCACCGAAGCCATGCTTATATAATTTTTTTGGGGGGGA
TAAGGCTGTGGGAGGGAGGGGAGGGGAGTGTGGGATAAGCGCTGCAGCCA
GCAAGGCAGGGAAAATAAATCTGTCGGGGTGAGATCGCGCTTGTTTTAAC
GAACATGTAACGAGGGGAACGATACATAGTAAATGTGAGATGTCAAGGCA
GTGAATTTCGACAATCATCATGTAGAACAATGAAGGCGAAACGTGAAGCG
ACGATTGCCGTGTCTGCCTTGGTCAGGTGATGCCTAAGACACCAGCAAAA
AGCCAAGGGATCCTCCATATGCACACCTTGTACAGTTTCGACCTTGTCCA
CACCGGAAATATTACCTACATAGACATGCCCAGCCCGTGCCTATGTGCGT
CTTTTTAATTCCCGCCGTGTCCTGCTCATCGTGTGCTTTTGCGAAATACT
TGGCTGTGACGGACCCGTCTTCGGGCTTGGACAGCGACAGCTCATCAGCA
AGCGACGCATCGACGTAATTGACATCCCCGCTCCACAAAAAACTCCCCAG
ACTCTTACCACATCTCCCAGAGGCTTGACCTAGTATACCATGCTCAGCGC
TGTAGCTAGGCACCGCGCCATGTGTCAGCTCCGACATACAGCTCTCTTGT
AGCCTCCACCTCACCACCACCTCCCTCCATCCCCTCACCCTACATCACGC
AACACACGACACAACAGCTCATCCATTAAAATAAAACAATGGCTCGCCAC
GCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGCTGTGTC
CTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCCGAATGA
AGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAATGGCCGC
TCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGAGTGGGT
GTGCGCGGACTGCGGCTACATATACAACGAGCAGGACTGCGGTGGCATGC
GCTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGCTCAGCACCT
CGGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGCGTGACGAACGA
TGGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGGGCTTGGCCG
TGATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGATTTAAATTCCGTCA
TGCTGGAGAAGGAGAGATTCTCGTGCTACCCCACGCATGCCGCCCCTCCC
TTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCGTCTGGATGGCAAGGAAG
GGTTGGAGGAGGGAAAGGGTAAGAATTAGGGCGGGAGTGTGAAGGTGAGG
AAAGCAGATACAATGATGAATGATCACGGAAAGAAAGAGAGGGACTGGAA
GTAAAAGAAATATTTTTAAAAACAGACAGAGAGAGAGAGAGACACACACA
CACACACAGACAGACACACACACACTCGAGTACTAAGAGTGTGAGTGCAG
TGAAGAAGGAGAAAAGGAGGAAAGAAAGAAAGAAAAGGCGAAGGAGAATA
AGGCGGAGGAATAAGAAGGAGATGGTGATGATGAAAGAACGAGAAACAT
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protein sequence of NO15G00310.1

>NO15G00310.1-protein ID=NO15G00310.1-protein|Name=NO15G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MARHATSSLLTLLCLALLAVSSFAFMPMRPSLSLSRMKAASLSAPSSRGT
RNGRSKGLTAMDMQYWEGEWVCADCGYIYNEQDCGGMRFEDQKRGFKCPQ
CSAPRRRFAKKVGDKIGVTNDGGDAPILLFSIVGGLAVIGFGIYAALSGI
*
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mRNA from alignment at chr15:96516..98708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00310.1 ID=NO15G00310.1|Name=NO15G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at chr15:96516..98708- (Nannochloropsis oceanica)
TTTTTTGAGGAAGGGAAGGAGGGAGGGAGAAAGGGAGGAATGGAGGGAGG
GAGGGCGGGTTGAGGGGAGGTTGCCACATAGATGGGGGTCACGGAATATA
AAGCCTGGAAGGGAGCGCATAAATGTAGGCAACTGAATACAAAGCATCGA
CACAAACGTCCACAACCTTGTCGTTGAGGAGTAATAGCTGACACAGGGCC
TCAATTCTCCCTCCCTCCCGTCCGCCTTCTTCCCTTACCTCGCTCAGCTG
GGTCTTGAGCTGATTGAGCTGTTCAATGGAAAGCTTGCTGAGGTCGATTT
CTCGCTCGCCCACCACCGAAGCCATGCTTATATAATTTTTTTGGGGGGGA
TAAGGCTGTGGGAGGGAGGGGAGGGGAGTGTGGGATAAGCGCTGCAGCCA
GCAAGGCAGGGAAAATAAATCTGTCGGGGTGAGATCGCGCTTGTTTTAAC
GAACATGTAACGAGGGGAACGATACATAGTAAATGTGAGATGTCAAGGCA
GTGAATTTCGACAATCATCATGTAGAACAATGAAGGCGAAACGTGAAGCG
ACGATTGCCGTGTCTGCCTTGGTCAGGTGATGCCTAAGACACCAGCAAAA
AGCCAAGGGATCCTCCATATGCACACCTTGTACAGTTTCGACCTTGTCCA
CACCGGAAATATTACCTACATAGACATGCCCAGCCCGTGCCTATGTGCGT
CTTTTTAATTCCCGCCGTGTCCTGCTCATCGTGTGCTTTTGCGAAATACT
TGGCTGTGACGGACCCGTCTTCGGGCTTGGACAGCGACAGCTCATCAGCA
AGCGACGCATCGACGTAATTGACATCCCCGCTCCACAAAAAACTCCCCAG
ACTCTTACCACATCTCCCAGAGGCTTGACCTAGTATACCATGCTCAGCGC
TGTAGCTAGGCACCGCGCCATGTGTCAGCTCCGACATACAGCTCTCTTGT
AGCCTCCACCTCACCACCACCTCCCTCCATCCCCTCACCCTACATCACGC
AACACACGACACAACAGCTCATCCATTAAAATAAAACAATGGCTCGCCAC
GCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCTGCTGGCTGTGTC
CTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCTTGAGCCGAATGA
AGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACCCGCAATGGCCGC
TCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGAAGGAGAGTGGGT
GTGCGCGGACTGCGGCTACATATACAACGAGCAGGTGAGAGGAGGGACAT
GTGAGAGAGGGAGAAGAAAGGGGAATGAATGTAACGAGGGGTCTCGTCTT
CGTCTTCCGTGCATGACTGCTCACACTCCCTCCCTCTCTCCTTCCCTCCC
TCCTTTCCTCCCTCCCTCCCTCCTATCCCACAGGACTGCGGTGGCATGCG
CTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAATGCTCAGCACCTC
GGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGGCGTGACGAACGAT
GGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGGGGGGCTTGGCCGT
GATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGGTACGTTGGATCATTT
AATGGTTTATATGATCATATATATAGATAGATCGCTTGCGAGTAATCCCT
TATCCTTTCCTTTCAACGCGCACTCTCATTTATCACTTGTCGTCCCTTCC
TTCCCTCCCTCCCTACCTCCCTCCTGCAGATTTAAATTCCGTCATGCTGG
AGAAGGAGAGATTCTCGTGCTACCCCACGCATGCCGCCCCTCCCTTCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCGTCTGGATGGCAAGGAAGGGTTGG
AGGAGGGAAAGGGTAAGAATTAGGGCGGGAGTGTGAAGGTGAGGAAAGCA
GATACAATGATGAATGATCACGGAAAGAAAGAGAGGGACTGGAAGTAAAA
GAAATATTTTTAAAAACAGACAGAGAGAGAGAGAGACACACACACACACA
CAGACAGACACACACACACTCGAGTACTAAGAGTGTGAGTGCAGTGAAGA
AGGAGAAAAGGAGGAAAGAAAGAAAGAAAAGGCGAAGGAGAATAAGGCGG
AGGAATAAGAAGGAGATGGTGATGATGAAAGAACGAGAAACAT
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Coding sequence (CDS) from alignment at chr15:96516..98708-

>NO15G00310.1 ID=NO15G00310.1|Name=NO15G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr15:96516..98708- (Nannochloropsis oceanica)
ATGGCTCGCCACGCCACTTCTTCCCTTCTGACCCTCCTCTGCCTCGCTCT
GCTGGCTGTGTCCTCCTTCGCCTTCATGCCTATGCGCCCTTCCCTCTCCT
TGAGCCGAATGAAGGCTGCTTCTCTCTCCGCCCCGTCTTCCCGTGGCACC
CGCAATGGCCGCTCTAAGGGCCTGACGGCCATGGATATGCAGTATTGGGA
AGGAGAGTGGGTGTGCGCGGACTGCGGCTACATATACAACGAGCAGGACT
GCGGTGGCATGCGCTTTGAGGACCAAAAGAGGGGATTTAAGTGCCCTCAA
TGCTCAGCACCTCGGCGTCGGTTTGCCAAGAAGGTGGGGGACAAGATCGG
CGTGACGAACGATGGAGGCGACGCCCCTATCCTCCTCTTCTCGATTGTGG
GGGGCTTGGCCGTGATTGGCTTCGGGATCTATGCGGCCTTGTCTGGGATT
TAA
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Synonyms
Publications