NO15G00090.1, NO15G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00090.1
Unique NameNO15G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1032
Alignment locationchr15:18579..20736 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:18579..20736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00090.1 vs.
Match: EWM20825.1 (ring-box protein [Nannochloropsis gaditana])

HSP 1 Score: 260.0 bits (663), Expect = 5.200e-66
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 0 
Query:   33 MAEEAK-TVGMDEDRPAPGGGAAESGGGPTSGTGTAPAGGAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            MAEEAK  VGMDEDRP P GG AE G G    T  + +G AAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
The following BLAST results are available for this feature:
BLAST of NO15G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20825.15.200e-6687.86ring-box protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00090NO15G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00090.1NO15G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00090.1.cds1NO15G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00090.1.cds2NO15G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00090.1.cds3NO15G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00090.1.cds4NO15G00090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00090.1.cds5NO15G00090.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00090.1 ID=NO15G00090.1|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp
AGCGAGTCCGCCGAAATGCGGGGAAAGCAAGCGAAATACGGCAAAACCCA
CCCTGAACAGCAGCGGCTCCTCCCCAAAACCTGGCAGCGAGTGTTCGCCG
TCTTGCTTTCCTTGGCTTGTGGAAGTATGCGTGGAGTGTCAGTGAGGTGC
GGCTCATAGGACTCTCCTATAGTAGCTCAAACGTCGTCGTCATCGTCATC
GTCTTTCTTCTCCTCGCCTGCCAAGGACTCATTTTCGCAATGCCTCCTCC
CTCCCTCCCCTCCCTCACACAGTACTTCAGGTGGCAAGAGCGCGACGACG
AGGAGGGGAGGCTGCATTATCAGAGACCCACAGAGATGGCAGAGGAAGCC
AAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAGGAGGGGCAGC
AGAAAGCGGTGGAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGG
GTGCAGCCCCCCGCTTCGAGATCAAGAAATGGAACGCGGTGACGATGTGG
TCGTGGGACATATGCGCGGACACGTGCGCCATCTGTCGGAATAACCTCAA
CGAGCCTTCCATCGAGTACCAGGCCAACCCCTCCCCCAACAACGAGAACG
GCCTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGC
ATTCAGCGCTGGCTCAAGGCTCGGTCCGTCTGCCCCCTGTGTAACAAGGA
GTGGGAATTCAGTAAGATCGAGCGCATCCCCGGCTACAACGCCCTGGGCA
TTTAAGCAATTTGCTCAGTGGGCTTGCTTTCTTCTCTTCCCTCCCTCTCT
CCTTTGGGGACTGGGTGGGGGAGGGTGTGATGAGCAGGAGGAAGAGGGAG
AGATGTAGGAGATAGTGGACATGTTCATAGTGAAAGAAAAAGAAGATGGA
AAAGGAGAAGAAAAAGTAAAAGAATAAGAACAAGGCGAACGTGGGAAGGA
GGGTGGGCAAGCGAGGCAATATTATTAAGACGACAAAAAGGAAAATAAAG
AGAAAAGGAAGATTACTCACGTATGAGCACGG
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protein sequence of NO15G00090.1

>NO15G00090.1-protein ID=NO15G00090.1-protein|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MPPPSLPSLTQYFRWQERDDEEGRLHYQRPTEMAEEAKTVGMDEDRPAPG
GGAAESGGGPTSGTGTAPAGGAAPRFEIKKWNAVTMWSWDICADTCAICR
NNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPL
CNKEWEFSKIERIPGYNALGI*
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mRNA from alignment at chr15:18579..20736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00090.1 ID=NO15G00090.1|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp|location=Sequence derived from alignment at chr15:18579..20736- (Nannochloropsis oceanica)
AGCGAGTCCGCCGAAATGCGGGGAAAGCAAGCGAAATACGGCAAAACCCA
CCCTGAACAGCAGCGGCTCCTCCCCAAAACCTGGCAGCGAGTGTTCGCCG
TCTTGCTTTCCTTGGCTTGTGGAAGTATGCGTGGAGTGTCAGTGAGGTGC
GGCTCATAGGACTCTCCTATAGTAGCTCAAACGTCGTCGTCATCGTCATC
GTCTTTCTTCTCCTCGCCTGCCAAGGACTCATTTTCGCAATGCCTCCTCC
CTCCCTCCCCTCCCTCACACAGTACTTCAGGTGGCAAGAGCGCGACGACG
AGGAGGGGAGGCTGCATTATCAGAGACCCACAGAGATGGCAGAGGAAGCC
AAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAGGTAGGGGGGT
GGAGAGGGTTGAGAGAGGGCGCACTGGTAGAAAGGACAGAGCTGCCCTGC
GGGAGAAGGGTATGTTGAGTGCGTGTGTGTTTGTTTGTTTGTGTGTGTAT
GTGTATGTGTGGGACCTCCTTGCCAGACGTGGGCACATGCTATAACATTG
CTTGCCTGTCTTGTGACTGCACTGCAATTGTTTTGTCCTTCTGGCCCTCT
CCCTTTCCTCTCTCCCTTTCCTTACTACCCACGTTCCAACGGTGGTACAG
CAGCACACCACTGCCTCTTCCTACTTTATCGCCCCCCCTCCCTTTACCAC
CCGTCTCTGTCTCAATCCCCTCCACTGCTTCCTTTCCTGGGCGTCTGCTT
GCTCTTGCATTCATCAGCATTTGCCTCCATCCACCTGCACGTAACACCCT
CCTGAAAGCCTCCGTCCCTTCCATCCCTCCCGCTCCCTCAATCTCTCATC
CCCTCTGCTCACACTTCCAACCCCACTCCTCAGGAGGGGCAGCAGAAAGC
GGTGGAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGG
TGAGGAGGGGAGGGAGGAAGGGAGGGATTAGAAGGAGGGGAAGTCGGGAA
GAAGGAGGATGAGAAGGAAGGCACCTTGACTAGTGGTGCTCTCGGCGAGC
CATTTTTGTACACAGTCTGTCTATCTATCTGCTTATCCATCCAGCTGTTT
GGAGAGGAGAGCAGCGGATACCGTATCATTCTGACAACCGTCCTCCTTCC
CTCCCTCCCTCCATCCTCTTCACCCCTTGAAAGCCCCCCGCTTCGAGATC
AAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATATGCGCGGACAC
GTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATCGAGTACCAGG
TACGTCCTCCCTCCCTCCTTCCCCTCCTTTCTTCCTGTGCCTGTAGGTAT
TTTGTTGTCTCGAGCATCCCCCTCCCTCTCACTCTCCTCTCTCGCCCTGC
TCCAACCTATTTCTTAGCAGCTGCTCAATCTCTCCCTTCCTCCCTCCCTC
CCTCTTTCCCTCCCTACCTCTCTCCCTTCCTCTTTCCCTCCCTCCCTCCC
CCCTCCCTACCTCCCGCTAGGCCAACCCCTCCCCCAACAACGAGAACGGC
CTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGCAT
TCAGGTAGCTTCACAACCTGCCTGGCCTGGTTTTGCCTTCCTCCCACTCC
CTTTCTCTCCCCTCGCTCCCACTTTCTCCTCCTTGTCTCTTTCCACCCTC
AGTGATAACAATAATGAGGACATCGCGCCCTCCCTCCCTCCCTCTTTCCC
TCCCTCTTTCCCTCCCTCCCTCCCCTCACTAGCGCTGGCTCAAGGCTCGG
TCCGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCG
CATCCCCGGCTACAACGCCCTGGGCATTTAAGCAATTTGCTCAGTGGGCT
TGCTTTCTTCTCTTCCCTCCCTCTCTCCTTTGGGGACTGGGTGGGGGAGG
GTGTGATGAGCAGGAGGAAGAGGGAGAGATGTAGGAGATAGTGGACATGT
TCATAGTGAAAGAAAAAGAAGATGGAAAAGGAGAAGAAAAAGTAAAAGAA
TAAGAACAAGGCGAACGTGGGAAGGAGGGTGGGCAAGCGAGGCAATATTA
TTAAGACGACAAAAAGGAAAATAAAGAGAAAAGGAAGATTACTCACGTAT
GAGCACGG
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Coding sequence (CDS) from alignment at chr15:18579..20736-

>NO15G00090.1 ID=NO15G00090.1|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr15:18579..20736- (Nannochloropsis oceanica)
ATGCCTCCTCCCTCCCTCCCCTCCCTCACACAGTACTTCAGGTGGCAAGA
GCGCGACGACGAGGAGGGGAGGCTGCATTATCAGAGACCCACAGAGATGG
CAGAGGAAGCCAAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGA
GGAGGGGCAGCAGAAAGCGGTGGAGGGCCAACCAGTGGCACTGGCACGGC
GCCTGCGGGGGGTGCAGCCCCCCGCTTCGAGATCAAGAAATGGAACGCGG
TGACGATGTGGTCGTGGGACATATGCGCGGACACGTGCGCCATCTGTCGG
AATAACCTCAACGAGCCTTCCATCGAGTACCAGGCCAACCCCTCCCCCAA
CAACGAGAACGGCCTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCC
ACCTCGACTGCATTCAGCGCTGGCTCAAGGCTCGGTCCGTCTGCCCCCTG
TGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCGCATCCCCGGCTACAA
CGCCCTGGGCATTTAA
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Synonyms
Publications