NO15G00090, NO15G00090 (gene) Nannochloropsis oceanica

Overview
NameNO15G00090
Unique NameNO15G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2158
Alignment locationchr15:18579..20736 -

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Properties
Property NameValue
DescriptionRing-box protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:18579..20736 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR024766Znf_RING_H2
IPR001841Znf_RING
Homology
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: EWM20825.1 (ring-box protein [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 3.900e-61
Identity = 125/140 (89.29%), Postives = 125/140 (89.29%), Query Frame = 0 
Query:   33 MAEEAK-TVGMDEDRPAPGGGAXXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            MAEEAK  VGMDEDRP P GG        XXXXXXXXXXX   RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLXXXXXXXXXXXAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: CBJ27621.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 208.0 bits (528), Expect = 2.300e-50
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNAL 170
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +L
Sbjct:   32 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL 126
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: GAX19570.1 (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 202.2 bits (513), Expect = 1.300e-48
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:   26 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 122
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: GAX09680.1 (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 202.2 bits (513), Expect = 1.300e-48
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:   25 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 121
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_002183070.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45288.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 201.4 bits (511), Expect = 2.200e-48
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LG+
Sbjct:   38 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGL 134
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_005853728.1 (RING-box protein 1 [Nannochloropsis gaditana CCMP526] >EKU22630.1 RING-box protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.9 bits (507), Expect = 6.400e-48
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:   86 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 86
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: OEU19456.1 (ring-box protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 198.0 bits (502), Expect = 2.400e-47
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNAL 170
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  L
Sbjct:   31 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 125
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_002290820.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92572.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 194.9 bits (494), Expect = 2.100e-46
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 167
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPGY
Sbjct:   27 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGY 118
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_009035042.1 (hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens] >EGB10225.1 hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens])

HSP 1 Score: 193.7 bits (491), Expect = 4.600e-46
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSH------VFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 171
            R   ++WNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC H      VFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +LG
Sbjct:    2 RTATRRWNAVCMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHARPPAQVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLG 103
[Close]
BLAST of NO15G00090 vs. NCBI_GenBank
Match: EJK71281.1 (hypothetical protein THAOC_07305 [Thalassiosira oceanica])

HSP 1 Score: 186.8 bits (473), Expect = 5.600e-44
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0 
Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 167
            RFEIKKWNAV MWSWDICA+ CAICRN+LNEPSIEYQANPS  N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPG+
Sbjct:  129 RFEIKKWNAVAMWSWDICAEHCAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGF 220
The following BLAST results are available for this feature:
BLAST of NO15G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20825.13.900e-6189.29ring-box protein [Nannochloropsis gaditana][more]
CBJ27621.12.300e-5092.63conserved unknown protein [Ectocarpus siliculosus][more]
GAX19570.11.300e-4888.66RING-box protein 1 [Fistulifera solaris][more]
GAX09680.11.300e-4888.66RING-box protein 1 [Fistulifera solaris][more]
XP_002183070.12.200e-4887.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005853728.16.400e-48100.00RING-box protein 1 [Nannochloropsis gaditana CCMP5... [more]
OEU19456.12.400e-4788.42ring-box protein [Fragilariopsis cylindrus CCMP110... [more]
XP_002290820.12.100e-4689.13predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_009035042.14.600e-4682.35hypothetical protein AURANDRAFT_22764, partial [Au... [more]
EJK71281.15.600e-4484.78hypothetical protein THAOC_07305 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL149nonsL149Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008564NSK008564Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00090.1NO15G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586943gene_4561Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100314g1gene9588Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00090.1NO15G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00090 ID=NO15G00090|Name=NO15G00090|organism=Nannochloropsis oceanica|type=gene|length=2158bp
AGCGAGTCCGCCGAAATGCGGGGAAAGCAAGCGAAATACGGCAAAACCCA
CCCTGAACAGCAGCGGCTCCTCCCCAAAACCTGGCAGCGAGTGTTCGCCG
TCTTGCTTTCCTTGGCTTGTGGAAGTATGCGTGGAGTGTCAGTGAGGTGC
GGCTCATAGGACTCTCCTATAGTAGCTCAAACGTCGTCGTCATCGTCATC
GTCTTTCTTCTCCTCGCCTGCCAAGGACTCATTTTCGCAATGCCTCCTCC
CTCCCTCCCCTCCCTCACACAGTACTTCAGGTGGCAAGAGCGCGACGACG
AGGAGGGGAGGCTGCATTATCAGAGACCCACAGAGATGGCAGAGGAAGCC
AAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAGgtaggggggt
ggagagggttgagagagggcgcactggtagaaaggacagagctgccctgc
gggagaagggtatgttgagtgcgtgtgtgtttgtttgtttgtgtgtgtat
gtgtatgtgtgggacctccttgccagacgtgggcacatgctataacattg
cttgcctgtcttgtgactgcactgcaattgttttgtccttctggccctct
ccctttcctctctccctttccttactacccacgttccaacggtggtacag
cagcacaccactgcctcttcctactttatcgccccccctccctttaccac
ccgtctctgtctcaatcccctccactgcttcctttcctgggcgtctgctt
gctcttgcattcatcagcatttgcctccatccacctgcacgtaacaccct
cctgaaagcctccgtcccttccatccctcccgctccctcaatctctcatc
ccctctgctcacacttccaaccccactcctcagGAGGGGCAGCAGAAAGC
GGTGGAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGg
tgaggaggggagggaggaagggagggattagaaggaggggaagtcgggaa
gaaggaggatgagaaggaaggcaccttgactagtggtgctctcggcgagc
catttttgtacacagtctgtctatctatctgcttatccatccagctgttt
ggagaggagagcagcggataccgtatcattctgacaaccgtcctccttcc
ctccctccctccatcctcttcaccccttgaaagCCCCCCGCTTCGAGATC
AAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATATGCGCGGACAC
GTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATCGAGTACCAGg
tacgtcctccctccctccttcccctcctttcttcctgtgcctgtaggtat
tttgttgtctcgagcatccccctccctctcactctcctctctcgccctgc
tccaacctatttcttagcagctgctcaatctctcccttcctccctccctc
cctctttccctccctacctctctcccttcctctttccctccctccctccc
ccctccctacctcccgctagGCCAACCCCTCCCCCAACAACGAGAACGGC
CTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGCAT
TCAGgtagcttcacaacctgcctggcctggttttgccttcctcccactcc
ctttctctcccctcgctcccactttctcctccttgtctctttccaccctc
agtgataacaataatgaggacatcgcgccctccctccctccctctttccc
tccctctttccctccctccctcccctcactagCGCTGGCTCAAGGCTCGG
TCCGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCG
CATCCCCGGCTACAACGCCCTGGGCATTTAAGCAATTTGCTCAGTGGGCT
TGCTTTCTTCTCTTCCCTCCCTCTCTCCTTTGGGGACTGGGTGGGGGAGG
GTGTGATGAGCAGGAGGAAGAGGGAGAGATGTAGGAGATAGTGGACATGT
TCATAGTGAAAGAAAAAGAAGATGGAAAAGGAGAAGAAAAAGTAAAAGAA
TAAGAACAAGGCGAACGTGGGAAGGAGGGTGGGCAAGCGAGGCAATATTA
TTAAGACGACAAAAAGGAAAATAAAGAGAAAAGGAAGATTACTCACGTAT
GAGCACGG
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protein sequence of NO15G00090.1

>NO15G00090.1-protein ID=NO15G00090.1-protein|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MPPPSLPSLTQYFRWQERDDEEGRLHYQRPTEMAEEAKTVGMDEDRPAPG
GGAAESGGGPTSGTGTAPAGGAAPRFEIKKWNAVTMWSWDICADTCAICR
NNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPL
CNKEWEFSKIERIPGYNALGI*
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Synonyms
Publications