NO15G00090, NO15G00090 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G00090
Unique Name	NO15G00090
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2158
Alignment location	chr15:18579..20736 -

Link to JBrowse

Properties


Property Name	Value
Description	Ring-box protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:18579..20736 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024766	Znf_RING_H2
IPR001841	Znf_RING

Homology

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: EWM20825.1 (ring-box protein [Nannochloropsis gaditana])

HSP 1 Score: 243.8 bits (621), Expect = 3.900e-61
Identity = 125/140 (89.29%), Postives = 125/140 (89.29%), Query Frame = 0

Query:   33 MAEEAK-TVGMDEDRPAPGGGAXXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            MAEEAK  VGMDEDRP P GG        XXXXXXXXXXX   RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLXXXXXXXXXXXAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: CBJ27621.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 208.0 bits (528), Expect = 2.300e-50
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNAL 170
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +L
Sbjct:   32 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL 126

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: GAX19570.1 (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 202.2 bits (513), Expect = 1.300e-48
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:   26 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 122

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: GAX09680.1 (RING-box protein 1 [Fistulifera solaris])

HSP 1 Score: 202.2 bits (513), Expect = 1.300e-48
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LGI
Sbjct:   25 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 121

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_002183070.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45288.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 201.4 bits (511), Expect = 2.200e-48
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  LG+
Sbjct:   38 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGL 134

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_005853728.1 (RING-box protein 1 [Nannochloropsis gaditana CCMP526] >EKU22630.1 RING-box protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.9 bits (507), Expect = 6.400e-48
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query:   86 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 172
            MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI
Sbjct:    1 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 86

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: OEU19456.1 (ring-box protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 198.0 bits (502), Expect = 2.400e-47
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNAL 170
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY  L
Sbjct:   31 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 125

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_002290820.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92572.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 194.9 bits (494), Expect = 2.100e-46
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 167
            RFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPGY
Sbjct:   27 RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGY 118

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: XP_009035042.1 (hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens] >EGB10225.1 hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens])

HSP 1 Score: 193.7 bits (491), Expect = 4.600e-46
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSH------VFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 171
            R   ++WNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC H      VFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +LG
Sbjct:    2 RTATRRWNAVCMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHARPPAQVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLG 103

[Close]

BLAST of NO15G00090 vs. NCBI_GenBank
Match: EJK71281.1 (hypothetical protein THAOC_07305 [Thalassiosira oceanica])

HSP 1 Score: 186.8 bits (473), Expect = 5.600e-44
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0

Query:   75 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 167
            RFEIKKWNAV MWSWDICA+ CAICRN+LNEPSIEYQANPS  N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPG+
Sbjct:  129 RFEIKKWNAVAMWSWDICAEHCAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGF 220

The following BLAST results are available for this feature:

BLAST of NO15G00090 vs. NCBI_GenBank

BLAST of NO15G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM20825.1	3.900e-61	89.29	ring-box protein [Nannochloropsis gaditana]	[more]
CBJ27621.1	2.300e-50	92.63	conserved unknown protein [Ectocarpus siliculosus]	[more]
GAX19570.1	1.300e-48	88.66	RING-box protein 1 [Fistulifera solaris]	[more]
GAX09680.1	1.300e-48	88.66	RING-box protein 1 [Fistulifera solaris]	[more]
XP_002183070.1	2.200e-48	87.63	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
XP_005853728.1	6.400e-48	100.00	RING-box protein 1 [Nannochloropsis gaditana CCMP5...	[more]
OEU19456.1	2.400e-47	88.42	ring-box protein [Fragilariopsis cylindrus CCMP110...	[more]
XP_002290820.1	2.100e-46	89.13	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
XP_009035042.1	4.600e-46	82.35	hypothetical protein AURANDRAFT_22764, partial [Au...	[more]
EJK71281.1	5.600e-44	84.78	hypothetical protein THAOC_07305 [Thalassiosira oc...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL149	nonsL149	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR095	ngnoR095	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008564	NSK008564	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G00090.1	NO15G00090.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586943	gene_4561	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100314g1	gene9588	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G00090.1	NO15G00090.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G00090 ID=NO15G00090|Name=NO15G00090|organism=Nannochloropsis oceanica|type=gene|length=2158bp
AGCGAGTCCGCCGAAATGCGGGGAAAGCAAGCGAAATACGGCAAAACCCA
CCCTGAACAGCAGCGGCTCCTCCCCAAAACCTGGCAGCGAGTGTTCGCCG
TCTTGCTTTCCTTGGCTTGTGGAAGTATGCGTGGAGTGTCAGTGAGGTGC
GGCTCATAGGACTCTCCTATAGTAGCTCAAACGTCGTCGTCATCGTCATC
GTCTTTCTTCTCCTCGCCTGCCAAGGACTCATTTTCGCAATGCCTCCTCC
CTCCCTCCCCTCCCTCACACAGTACTTCAGGTGGCAAGAGCGCGACGACG
AGGAGGGGAGGCTGCATTATCAGAGACCCACAGAGATGGCAGAGGAAGCC
AAAACGGTGGGCATGGACGAGGACCGGCCAGCGCCTGGAGgtaggggggt
ggagagggttgagagagggcgcactggtagaaaggacagagctgccctgc
gggagaagggtatgttgagtgcgtgtgtgtttgtttgtttgtgtgtgtat
gtgtatgtgtgggacctccttgccagacgtgggcacatgctataacattg
cttgcctgtcttgtgactgcactgcaattgttttgtccttctggccctct
ccctttcctctctccctttccttactacccacgttccaacggtggtacag
cagcacaccactgcctcttcctactttatcgccccccctccctttaccac
ccgtctctgtctcaatcccctccactgcttcctttcctgggcgtctgctt
gctcttgcattcatcagcatttgcctccatccacctgcacgtaacaccct
cctgaaagcctccgtcccttccatccctcccgctccctcaatctctcatc
ccctctgctcacacttccaaccccactcctcagGAGGGGCAGCAGAAAGC
GGTGGAGGGCCAACCAGTGGCACTGGCACGGCGCCTGCGGGGGGTGCAGg
tgaggaggggagggaggaagggagggattagaaggaggggaagtcgggaa
gaaggaggatgagaaggaaggcaccttgactagtggtgctctcggcgagc
catttttgtacacagtctgtctatctatctgcttatccatccagctgttt
ggagaggagagcagcggataccgtatcattctgacaaccgtcctccttcc
ctccctccctccatcctcttcaccccttgaaagCCCCCCGCTTCGAGATC
AAGAAATGGAACGCGGTGACGATGTGGTCGTGGGACATATGCGCGGACAC
GTGCGCCATCTGTCGGAATAACCTCAACGAGCCTTCCATCGAGTACCAGg
tacgtcctccctccctccttcccctcctttcttcctgtgcctgtaggtat
tttgttgtctcgagcatccccctccctctcactctcctctctcgccctgc
tccaacctatttcttagcagctgctcaatctctcccttcctccctccctc
cctctttccctccctacctctctcccttcctctttccctccctccctccc
ccctccctacctcccgctagGCCAACCCCTCCCCCAACAACGAGAACGGC
CTCTCCATCGCCTTCGGCTGCTGCTCCCACGTGTTCCACCTCGACTGCAT
TCAGgtagcttcacaacctgcctggcctggttttgccttcctcccactcc
ctttctctcccctcgctcccactttctcctccttgtctctttccaccctc
agtgataacaataatgaggacatcgcgccctccctccctccctctttccc
tccctctttccctccctccctcccctcactagCGCTGGCTCAAGGCTCGG
TCCGTCTGCCCCCTGTGTAACAAGGAGTGGGAATTCAGTAAGATCGAGCG
CATCCCCGGCTACAACGCCCTGGGCATTTAAGCAATTTGCTCAGTGGGCT
TGCTTTCTTCTCTTCCCTCCCTCTCTCCTTTGGGGACTGGGTGGGGGAGG
GTGTGATGAGCAGGAGGAAGAGGGAGAGATGTAGGAGATAGTGGACATGT
TCATAGTGAAAGAAAAAGAAGATGGAAAAGGAGAAGAAAAAGTAAAAGAA
TAAGAACAAGGCGAACGTGGGAAGGAGGGTGGGCAAGCGAGGCAATATTA
TTAAGACGACAAAAAGGAAAATAAAGAGAAAAGGAAGATTACTCACGTAT
GAGCACGG

protein sequence of NO15G00090.1

>NO15G00090.1-protein ID=NO15G00090.1-protein|Name=NO15G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MPPPSLPSLTQYFRWQERDDEEGRLHYQRPTEMAEEAKTVGMDEDRPAPG
GGAAESGGGPTSGTGTAPAGGAAPRFEIKKWNAVTMWSWDICADTCAICR
NNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPL
CNKEWEFSKIERIPGYNALGI*

Synonyms

Publications