NO14G02960, NO14G02960 (gene) Nannochloropsis oceanica

Overview
NameNO14G02960
Unique NameNO14G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr14:871605..873128 -

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease/exonuclease/phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:871605..873128 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Homology
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BLAST of NO14G02960 vs. NCBI_GenBank
Match: EWM24516.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 415.6 bits (1067), Expect = 1.400e-112
Identity = 199/306 (65.03%), Postives = 226/306 (73.86%), Query Frame = 0 
Query:   25 SSGGNGGKVDDGDRKRSFKVLTYNLWIAPLVRWHPSENLEAICDFIRSTDPDLVCLQEVFDWRLGPLGFLCEKIFGGGTGWGPISWLFYFEGLLLPFFQTNHQARIISTLLPSLPYSLPSAPIPFARGHNQGLLVLSKHVLHRPLARYLPGVVVHTMGTQAFTLYPSQGEGRRK----DAKEGIRFVNLHLVPNFETHPWKGRLLGWLGEKDVPRLQRQQLAAIGQEMRREGGEEG-----RWCAVGDFNVHGPEVLGVGSRVTEVTCPKEQHVLDHLVTALPYTYTVFPNVVLSDHYPVLATLEL 322
            + G +  + D G RK++F+VLTYN+WIAPLVRW+P ENLEAIC FI S D D+VCLQE FDWRLGP+GFLCE ++GGG  +GP+SW FY EGLL P  QT HQ RII  LLPSLP+ LPSAPIPF RGHNQGLLVLSKH LHRPL +YL    VH MG QAFT+ P   EGR K     A+E IRFVNLHLVPNF THPWKGR+LGWLGE+DVPR+Q +QLA IG                 WC VGDFNVH P VLGVGS V +VTCP+EQH+LDH V+ LPY Y VF +  LSDHYPVLAT  L
Sbjct:    9 TKGESSTQTDGGRRKQTFRVLTYNVWIAPLVRWNPIENLEAICKFIESLDVDIVCLQEAFDWRLGPMGFLCETLWGGGASFGPLSWFFYVEGLLFPVSQTCHQKRIIEALLPSLPHHLPSAPIPFGRGHNQGLLVLSKHPLHRPLRQYLTCTPVHHMGFQAFTVAPLPREGRGKGGEAGAREDIRFVNLHLVPNFHTHPWKGRVLGWLGERDVPRMQAKQLAEIGXXXXXXXXXXXXXXXRAWCVVGDFNVHRPRVLGVGSLVDQVTCPQEQHILDHFVSPLPYNYQVFADNTLSDHYPVLATFAL 314
The following BLAST results are available for this feature:
BLAST of NO14G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24516.11.400e-11265.03Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002521NSK002521Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02960.1NO14G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639474gene_5874Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100678g2gene5963Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02960.1NO14G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02960 ID=NO14G02960|Name=NO14G02960|organism=Nannochloropsis oceanica|type=gene|length=1524bp
ATGTTGTCCCACTCCGCAACACGACTCGATAGGCGTATAATGGCCGGTAC
GACTCAGCCCCAGATTGGCGGTAGTAGTGGTGGTAATGGCGGCAAGGTTG
ATGACGGCGATCGCAAGCGAAGCTTTAAGgttcgtgggtggatagtagag
tcgcatgcctcccttttttctctatattaattattccgcatcgagtcgtt
gctgtaatccttcatggctcgcgtctgtctttccttctctcatctttcta
attccccttgcctctccgaatccgtaacccatcctcccccgcgctcgtag
GTCCTTACCTATAACCTTTGGATCGCACCGCTAGTGCGCTGGCATCCCAG
CGAGAATCTGGAGGCCATATGCGACTTTATCAGAAGCACCGACCCGGACT
TGGTGTGCCTACAAGAGgtatgtgctagcggggtaaaaatgcggagggag
gatgaatgggaattcactctgtttgcaggctgatggcatttacgggggag
gctggggagcgacggactgtgcttgtccgtgaattgtaggcaaagaaacg
ccaattaaatcgacgtatacgcttcacagactcaccccacactcctaccc
gcctccacgcctcaccctccttcccttccccctcccgtttacaagGTGTT
TGACTGGCGCCTCGGCCCTCTGGGTTTTTTGTGCGAAAAAATATTTGGCG
GCGGCACTGGCTGGGGGCCCATCTCCTGGTTATTTTATTTCGAAGGCCTC
CTCCTCCCCTTCTTCCAAACCAATCACCAAGCCCGCATCATCTCCACCCT
CCTTCCTTCCCTCCCTTATTCCCTTCCGTCGGCTCCCATCCCATTTGCCC
GGGGCCACAACCAAGGCCTGCTGGTGTTGTCGAAGCACGTCCTGCACCGG
CCCCTCGCCCGATACCTCCCGGGAGTGGTGGTCCACACCATGGGCACCCA
AGCCTTCACCCTCTACCCCTCCCAAGGGGAGGGAAGGAGGAAGGACGCGA
AGGAGGGCATTCGTTTCGTGAACCTTCACTTGGTGCCCAATTTTGAGACG
CACCCCTGGAAAGGTCGTTTGTTGGGGTGGCTTGGCGAGAAAGACGTGCC
TCGGCTACAGAGGCAGCAGCTGGCTGCCATCGGGCAGGAAATGAGGCGGG
AGGGAGGAGAGGAGGGCAGGTGGTGTGCAGTGGGCGATTTTAATGTGCAT
GGTCCCGAGGTGTTGGGGGTGGGGAGTCGAGTGACAGAGgtgggtggtag
gaggagggagggagggagggagagagggagaggagggggagtagcaagca
gaggaatgtcctcaatgacaaagccatgaaaagcgaaattaaatttgatc
gaatcaccccttcctccctccctccctctctccctccctccccatcagGT
GACCTGCCCGAAGGAGCAGCACGTGCTAGACCACCTGGTGACTGCCCTGC
CCTACACCTACACCGTCTTTCCCAACGTCGTCCTTAGTGACCATTATCCC
GTCCTGGCCACGCTCGAGTTGTAG
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protein sequence of NO14G02960.1

>NO14G02960.1-protein ID=NO14G02960.1-protein|Name=NO14G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MLSHSATRLDRRIMAGTTQPQIGGSSGGNGGKVDDGDRKRSFKVLTYNLW
IAPLVRWHPSENLEAICDFIRSTDPDLVCLQEVFDWRLGPLGFLCEKIFG
GGTGWGPISWLFYFEGLLLPFFQTNHQARIISTLLPSLPYSLPSAPIPFA
RGHNQGLLVLSKHVLHRPLARYLPGVVVHTMGTQAFTLYPSQGEGRRKDA
KEGIRFVNLHLVPNFETHPWKGRLLGWLGEKDVPRLQRQQLAAIGQEMRR
EGGEEGRWCAVGDFNVHGPEVLGVGSRVTEVTCPKEQHVLDHLVTALPYT
YTVFPNVVLSDHYPVLATLEL*
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Synonyms
Publications