Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr14 genome chr14:757880..761552 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02510.1 vs.
Match: EWM24564.1 (hypothetical protein Naga_100140g3 [Nannochloropsis gaditana])
HSP 1 Score: 142.9 bits (359), Expect = 4.200e-30
Identity = 140/339 (41.30%), Postives = 191/339 (56.34%), Query Frame = 0
Query: 1 MFGNLFGKQSIDNLDLEGWRRKRQREDIEEVLDSSDDEECEQLEEREQSRTEESGGGRRGKAGRMRLNEETTMSSWRTTTTTTLTEERDVAMQYMQQGGGGEGGGKEENGEERGE--------EDGIGGMLRMMTAMQEEPRRGVDEGQGQDEDEEAGEEGGEEEEEITEETLLKTLLEAVASAKRARGE-------AVSMEE-EEGKEEDLIDLLDRPSQCTRGTTTTTATNPS-IEQLLHGFRGILP---PTFSSSPPPPLQDLLDALRTTHKDRLQDSAKQIAHELKKAQTSLHVRLPYRHGALLRASRQRQREQQREKEEQQQQQQEGGGGEGGG 320
MF NLFG LD EGWRRKR ++IE+V +S D EE + EERE + T++ G RR KAGRM L + W +TL E R+ + GG EG E+ E R E +D GML MMTA+++ D + E+E+ EE GE+ ++E+ LL+TLL AV AK +R +++MEE EE EE +DLL +Q + T A S ++ LL GFRG+L SS+P P ++L++AL TT DRL+DSA+QIAHEL+K Q SL +RLPY+ GAL RAS EQ+RE + Q++++ EG G G
Sbjct: 1 MFANLFGGSRKGILDTEGWRRKRNYDEIEKVFES-DQEEQDHEEEREPTWTDDVRGARR-KAGRMDL-----IDVW-----STLEEPRECEVL-----GGNEGKKGEKGKEVRSEMVEVVVEAKDMGLGMLGMMTAVEK------DTAGARREEEDVEEEPGED---VSEDALLETLLRAVKVAKESRERPAGGVDISIAMEEKEEEGEEKSLDLLGHQTQFFQPTQKEAARRASPVQDLLRGFRGVLGGRRSAPSSAPLPCFRELIEALSTTQADRLEDSARQIAHELRKVQESLRIRLPYQPGALRRAS----EEQRREMQAQEERRSEGVGSASKG 309
The following BLAST results are available for this feature:
BLAST of NO14G02510.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 4.20e-30 / Id = 41.30 Sequence EWM24564.1
Match Name E-value Identity Description
EWM24564.1 4.200e-30 41.30 hypothetical protein Naga_100140g3 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO14G02510.1 ID=NO14G02510.1|Name=NO14G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3089bp back to top protein sequence of NO14G02510.1
>NO14G02510.1-protein ID=NO14G02510.1-protein|Name=NO14G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=781bp back to top mRNA from alignment at chr14:757880..761552+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02510.1 ID=NO14G02510.1|Name=NO14G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3673bp|location=Sequence derived from alignment at chr14:757880..761552+ (Nannochloropsis oceanica)ATGTTTGGCAACCTGTTCGGCA
AGCAGTCTATAGACAACCTGGACCTGGAGGGCTGGCGCCGCAAGCGGCAG
CGCGAAG GTAAATAATACGCTAAGTTCTGGGGAGCAGGGGTCTGGTTGTT
CCGCTTGCCGATAGATTAGATACCCTCATTTGCACACAGCTCACTACAAA
CCGTGCACACGCACACGCACGCAACACAGATATCGAGGAGGTCCTGGACA
GTAGCGATGATGAGGAGTGCGAGCAGCTTGAGGAGCGGGAGCAGTCAAGG
ACAGAGGAAAGCGGGGGTGGGCGCCGCGGCAAGGCGGGGCGGATGCGTCT
GAACGAG GTGAGAATAGAGGAGAAGGGAGGGACAGGCAGAGGGTACTAGC
TATCGAAGTGCAGGCACATGTTTTTTTGGTACCATGCACTTGCATTTTGT
AGGAGGGTCTGGGTGTCGACCGAAATGAAAGGAAGAAGGAGATGGAGGGC
AAGAGGAAGGGCCCATCATCCCTAAAGGCGCGCCTCTCCCTTTGATACCC
CTCATTGCTACTCCACTCTTATCCTCTTCTTTGCAATTCATAAACTGTTG
CCCAAAGTGTGGAACACCCAATCGCACTTTTTGTGGGTGTAGCCTTTCAC
TTATCATCCTCTTGCCTCATACTCTCCCAAAAATAAATAGGAGACCACCA
TGAGCAGCTGGCGCACGACGACGACGACGACACTGACTGAAGAGCGCGAC
GTCGCCATGCAATACATGCAGCAAGGCGGAGGAGGGGAAGGAGGGGGGAA
GGAGGAAAATGGGGAGGAAAGGGGGGAAGAGGATGGGATAGGGGGAATGC
TGAGAATGATGACGGCGATGCAGGAGGAACCACGGAGAGGAGTGGATGAA
GGTCAGGGCCAGGACGAGGATGAGGAGGCAGGAGAAGAGGGGGGAGAAGA
AGAGGAGGAGATCACGGAAGAGACTTTGTTAAAGACGCTATTAGAAGCCG
TGGCGTCCGCGAAACGTGCGCGGGGAGAAGCAGTGTCGATGGAGGAGGAG
GAAGGGAAGGAGGAAGACCTAATCGATCTGCTTGACCGCCCTAGCCAGTG
CACGCGTGGCACCACCACCACCACTGCCACCAATCCCTCTATCGAACAAC
TCCTCCACGGCTTCCGTGGCATCCTCCCCCCCACATTTTCCTCCTCCCCT
CCTCCTCCATTGCAGGACCTTCTTGACGCCCTTCGCACCACCCACAAGGA
TCGCCTCCAAGACAGCGCCAAGCAAATCGCGCACGAGCTGAAGAAAGCCC
AAACCTCCCTTCATGTTCGCCTTCCCTACCGGCATGGTGCTCTTCTGCGT
GCCTCTCGACAGCGACAACGGGAGCAACAGCGGGAGAAGGAAGAGCAGCA
GCAGCAGCAGCAGGAAGGAGGAGGAGGGGAGGGAGGAGGAGGCGCGAAGA
AAGCAGACGAAGTATTCGAGCAGCAGATGTGGACGTGCAATAGTTTGATT
GACCAGCTGCTCGCGCTGGAGGAGGCGGGGGGTCGGTTGATTGAATACGG
CCGTGAGTACAGTGAGCGAAATACGGGAGCGTTGGAAGAGAAGGATGCAT
GGATCAAGACGTGGCAATTCAAATTGCTTGAGCAGAGTGCAGAGGTGGAG
CGGACGAAGGGGGAATTGAGGGGGATGGATGAGGAGTTTGATACGATTGT
ACAGCGTTCATTTGCTGCTTCCTCGGAGGAGGGGGGGAGTGGGCTATCCT
CCATCCCCTCCCTCCCTACCTCTCCCTCCTTTCCTTCCTCGCTTGCCTTG
GTCTCCACGCTGCTGGATGTTTGTCGTGCCCCGCAATATGCGGACCTCGT
CGCCACCCGACAGCACAAGGCCGAGCAACTGGAAAACAAGGAACGGAAGC
GGCAACGGATCGGAACGAATCTTCGCCTGGTCGAGGCCTTCATTGCCCTT
TTGCGGGTGCTAGTCGAACAAGGCCGGCAGAAAGTCACCTCCCAAACTAA
GAAGGTGGAGCGTGAAATAGAGCAAATTCGAAGCCGGCTGCATGGGGATC
TGAAGGAGGAAGTGGTGGCAGCTGCATTGCGCTTGCAGCATGTGTTGGAA
TTTCACGAGGCGAGGAAGGAGAGGGCAGGGAAGAGTGCGAAGCTGCGAGA
GCATGAATTGAGGCAGCACACGTCCTTGTTCGGGCAAGACACCCCGACGG
AGACATTGAGATTGGAAGCATGCGTGAAGGAGTTAAGGAGAGTCGTGTCC
CATTCCACCTTGTCGATTGAACGGGCTATGCAACG GTACGTCTTTTTCCT
AGTCTCTCTTCCTCCCCCACTCCCCCGCCACTCTGTCCTTTTCTGCCTCC
CACTGCTCTGTTGGATGGGTCAATTGTGTCTCGTGGCTCACGATCCCTCC
CTCCCTTACCGAAGCAACCAAGTCTTCTGGGCTCGTGTCGAGGATGCCTT
GCCCGAGACCGTCGCCCGCTCGCTGGGTTCTCTCTTTCAGCATCACATGA
CCAGCCCCAACCAAGGCATCAACAGCAGCAGCAGCAATAGCACCAGCACC
GGCAGTGGGAAGGGCCGTCCCCTCTATTCTGCATACCCTGCTCCTTCGTC
CGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGGCTTTGCGGCCG
CGAATGGTTGTGGTAGTAATCCTTCCGAAGCGCAGTTTCCTGTGTTATTC
CTGCAAGGAGAAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGAAGGCTC
ACCGCTGGTACAGATTGTGGCAGAGGGAGCGGCAGCCTCGCAGCAGCAGG
AGGAGGAGGAGAGGGCCAAGGCAGTTAGGGGAGGAGGGGGCATGGGAATG
GAGGAAGAGAAGGGTGTGAGAGGGACGGAAGACGCGGTCATGGGTGTGAG
GGTGGGAGGAGGAGGGAGGAGAAGTCCGGAAGGGGATGGATGTGTCATCA
TGTGA back to top Coding sequence (CDS) from alignment at chr14:757880..761552+
>NO14G02510.1 ID=NO14G02510.1|Name=NO14G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=2343bp|location=Sequence derived from alignment at chr14:757880..761552+ (Nannochloropsis oceanica) back to top