NO14G02400.1, NO14G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02400.1
Unique NameNO14G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr14:712441..715331 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:712441..715331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02400.1 vs.
Match: CBJ48969.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 626.7 bits (1615), Expect = 6.300e-176
Identity = 326/488 (66.80%), Postives = 399/488 (81.76%), Query Frame = 0 
Query:    1 MSSYVLHESASGYALFELVQHDDIASLTDEVQASIQDVQRFGRTVKLKAFQPFTSAENALENMNSISEHVLSDDLKHFLELNLPKAKKAGKGT-ALGVIEPALGTIIQEELSFPCKSDEATREVLRGIRLHFNKYIKELDGGLLEKSQLGLGHSYSRAKVKFNPGRSDNMIIQSIALLDQLDKDLNTFAMRVREWYCWHFPELRDLVKDNYVFARCAAYVQDRTTLTEEKLDGLTEITLDEELSQSILTAAKTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKHLHAYLLEKMATVAPNLGTLIGETVAARLIAKAGSLTSLAKCPASTIQILGAEKALFRALKTKGNTPKYGLIYHSSFIGRAAAKNKGRISRYLANKCSIASRIDTFTEDPTTKYGEKLKEQVEERLRFYDTGAAPRKNVDVMTSVRKELEAAGVLVVGAGGEDGGKEKKKKKEKKEKKKGKEVAEEEEDEEDEMEVSPKKDKKKRK 488
            MS +VL+ESASGYAL E+++ +++ SL +EVQ ++ D QRF RTVKLK FQPFT+AENALEN+N+ISE +++DDLK+FLE+NLPK KK+   +  LG IEP L + IQ+ L FPC+SDE  +E++RGIR+HF++++KELDGG+ EK+QLGLGHSYSRAKVK NP RSDNMIIQSI LLDQLDKDLNTFAMRVREWYCWHFPELR+LVKDNY+FARCAAY++DR    EEKL GL EI +DEEL+ +IL A++ SMGMD S  DM NIV F  RMVKLAEYR+ L+AYL++KM  VAPNL  LIG+TV ARLI+KAGSLTSLAKCPAST+QILGAEKALFRALKTKGNTPKYG+IYHS+FIGRAAAKNKGRISR LANKC+IASRID+F+++P+TKYG++L+EQVEERL+FYDTG APRKN+ VM  V  E+   G    G   E      +KKK+K+E+K      EE+ED    ++ +P   KKK+K
Sbjct:    1 MSFFVLYESASGYALLEVMEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQIVTDDLKNFLEMNLPKVKKSKSASFQLGCIEPGLASAIQDRLGFPCRSDETVKEIIRGIRVHFHRFVKELDGGVGEKAQLGLGHSYSRAKVKMNPARSDNMIIQSICLLDQLDKDLNTFAMRVREWYCWHFPELRELVKDNYMFARCAAYIKDRAAFDEEKLPGLNEIVMDEELAAAILKASRHSMGMDASPVDMSNIVTFCERMVKLAEYRRDLYAYLVDKMGIVAPNLAALIGDTVGARLISKAGSLTSLAKCPASTVQILGAEKALFRALKTKGNTPKYGIIYHSTFIGRAAAKNKGRISRVLANKCAIASRIDSFSDEPSTKYGDELREQVEERLKFYDTGEAPRKNISVMEKVAAEIAREG----GEIAEVCTPSSQKKKKKRERK------EEDEDAVAAVDDAPSSKKKKKK 478
The following BLAST results are available for this feature:
BLAST of NO14G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48969.16.300e-17666.80conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02400NO14G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02400.1NO14G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02400.1.cds1NO14G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02400.1.cds2NO14G02400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02400.1.cds3NO14G02400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02400.1.cds4NO14G02400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02400.1 ID=NO14G02400.1|Name=NO14G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
ACGACAGATTCCAGGGAAGCCTTGTGGGTAGCAAGACCAGTAAGGGAACG
CAAGCGCAGCCGCACTGCCGCCTGCTGCTTGAGCTTCCATCACCGACGGA
GGATATTTTAGGACCTGCAGCCTGAGTTTCAGTGCGCAGGATCCGTCCCC
AAGCCCTTACATCGGCCATGTCCTCGTACGTCCTTCACGAATCTGCCTCT
GGGTACGCACTCTTCGAACTGGTCCAACACGACGATATTGCTTCTCTGAC
CGATGAGGTTCAAGCGTCTATCCAAGACGTGCAACGCTTCGGTCGTACGG
TCAAGCTTAAGGCATTCCAGCCCTTCACCTCGGCGGAGAACGCGTTGGAA
AACATGAATAGCATCTCGGAGCATGTCTTGAGTGATGACCTCAAGCACTT
TTTAGAACTGAATTTACCCAAGGCCAAAAAGGCGGGGAAGGGGACGGCAC
TTGGTGTGATAGAGCCGGCGCTAGGCACGATAATCCAGGAGGAGTTGTCG
TTTCCTTGCAAGAGTGATGAGGCGACAAGGGAGGTGTTGCGAGGGATAAG
GTTGCATTTCAATAAATATATCAAGGAGCTGGATGGGGGCCTGTTGGAGA
AGTCGCAGTTGGGGTTGGGGCATTCGTATTCCCGTGCTAAGGTCAAGTTC
AACCCGGGCCGGTCGGACAACATGATCATCCAATCAATCGCCCTGCTTGA
CCAACTTGATAAGGATCTTAATACCTTCGCGATGCGTGTCCGGGAATGGT
ACTGCTGGCATTTTCCCGAGCTCCGCGACTTGGTTAAGGATAATTATGTC
TTCGCTCGGTGTGCTGCCTACGTCCAGGATCGCACCACCCTGACAGAGGA
GAAATTGGACGGGTTGACAGAGATCACGCTGGACGAGGAATTGTCGCAGA
GTATTCTGACGGCGGCCAAAACGAGCATGGGCATGGACACCTCGGCCTTC
GACATGGGGAATATCGTGGCGTTCACTACACGGATGGTGAAGCTTGCGGA
GTACAGGAAGCACCTACACGCTTATTTGTTGGAGAAGATGGCGACGGTTG
CTCCCAATCTAGGCACACTCATTGGCGAGACCGTCGCCGCCCGGCTCATT
GCAAAGGCCGGTTCTCTCACCTCTCTCGCCAAATGCCCAGCCTCAACCAT
TCAAATCCTGGGTGCTGAGAAGGCCCTTTTCCGCGCCCTTAAAACCAAGG
GAAACACGCCCAAGTACGGCCTCATCTACCACTCCTCGTTCATTGGTCGT
GCGGCTGCCAAGAACAAAGGACGGATCTCTCGGTATCTTGCCAATAAATG
TTCTATTGCTTCGAGGATCGACACCTTCACAGAGGATCCAACCACAAAAT
ATGGAGAGAAGCTCAAGGAGCAGGTGGAGGAACGGTTAAGATTTTATGAC
ACCGGTGCGGCGCCAAGAAAGAACGTGGATGTGATGACGTCGGTGAGGAA
AGAGCTAGAAGCGGCGGGGGTGCTTGTGGTGGGGGCAGGAGGGGAGGATG
GCGGGAAGGAGAAGAAAAAGAAGAAGGAGAAGAAGGAAAAGAAGAAGGGG
AAGGAGGTGGCGGAAGAGGAGGAGGACGAGGAGGACGAGATGGAGGTGTC
TCCGAAGAAGGATAAGAAAAAGAGGAAGACTGATGAGGTGGAGGAGAGCG
CAGAGACGAAGAAAAAGAAGAAGAAGAAGGATAAGAAATAAAGAAGAGTG
AGAAGGGATGGGTTGAGGGACGGAGGAAACATGTGTGCAAAGATAAGTAC
TGGATGGATAAGATGAGAGAACGGAAAGTTATACGTGTGGGTAAGCGGGC
GAGAAGGAGTAGTGTGTGAGAGAGGACGAAAAATAGGAGTTGCTTTCGTT
TACCTGTGTCCTCGTTTACGTCTTGTGCTTGTTACAGGGGGCATGACGCT
CGGGACGAGAAGCAACACCCAGACACAGAGAATCTAAGAGCGGCAGGCAG
GAAGGAAAGAACGAGGACAAGACTGGAACTGGCAGAAGCATGGAT
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protein sequence of NO14G02400.1

>NO14G02400.1-protein ID=NO14G02400.1-protein|Name=NO14G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MSSYVLHESASGYALFELVQHDDIASLTDEVQASIQDVQRFGRTVKLKAF
QPFTSAENALENMNSISEHVLSDDLKHFLELNLPKAKKAGKGTALGVIEP
ALGTIIQEELSFPCKSDEATREVLRGIRLHFNKYIKELDGGLLEKSQLGL
GHSYSRAKVKFNPGRSDNMIIQSIALLDQLDKDLNTFAMRVREWYCWHFP
ELRDLVKDNYVFARCAAYVQDRTTLTEEKLDGLTEITLDEELSQSILTAA
KTSMGMDTSAFDMGNIVAFTTRMVKLAEYRKHLHAYLLEKMATVAPNLGT
LIGETVAARLIAKAGSLTSLAKCPASTIQILGAEKALFRALKTKGNTPKY
GLIYHSSFIGRAAAKNKGRISRYLANKCSIASRIDTFTEDPTTKYGEKLK
EQVEERLRFYDTGAAPRKNVDVMTSVRKELEAAGVLVVGAGGEDGGKEKK
KKKEKKEKKKGKEVAEEEEDEEDEMEVSPKKDKKKRKTDEVEESAETKKK
KKKKDKK*
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mRNA from alignment at chr14:712441..715331+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02400.1 ID=NO14G02400.1|Name=NO14G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2891bp|location=Sequence derived from alignment at chr14:712441..715331+ (Nannochloropsis oceanica)
ACGACAGATTCCAGGGAAGCCTTGTGGGTAGCAAGACCAGTAAGGGAACG
CAAGCGCAGCCGCACTGCCGCCTGCTGCTTGAGCTTCCATCACCGACGGA
GGATATTTTAGGACCTGCAGCCTGAGTTTCAGTGCGCAGGATCCGTCCCC
AAGCCCTTACATCGGCCATGGTATGTCGTCAAACATAAGAAGGGGTATTA
TGAAGTGATCTAGTTCGGGATGAATGGCGGGGTAAAGAGTAGAGTCACCA
CTACAGGCGAACATGCCTCCACCCACCTCCCCACACCCCTCTCCCTCTAC
TCTGTGGTTATGTGCAGCATACACACTTGACCACTCTCCTGTCTGTTCGT
GCCTGGAAATCTTTCCATTCAGTATCTGTGTCTTTGCCTTGCCCGTTTGT
TCCGTCCGTTTTTTCCTCCCCTCAATCACTCACTTGTGCCCCCCCGCTTT
TTCCCCTCCCCTCCCTCAGTCCTCGTACGTCCTTCACGAATCTGCCTCTG
GGTACGCACTCTTCGAACTGGTCCAACACGACGATATTGCTTCTCTGACC
GATGAGGTTCAAGCGTCTATCCAAGACGTGCAACGCTTCGGTCGTACGGT
CAAGCTTAAGGCATTCCAGCCCTTCACCTCGGCGGAGAACGCGTTGGAAA
ACATGAATAGCATCTCGGAGCATGTCTTGAGTGATGACCTCAAGCACTTT
TTAGAACTGAATTTACCCAAGGCCAAAAAGGCGGGGAAGGGGACGGCACT
TGGTGTGATAGAGCCGGCGCTAGGCACGATAATCCAGGAGGAGTTGTCGT
TTCCTTGCAAGAGTGATGAGGCGACAAGGGAGGTGTTGCGAGGGATAAGG
TTGCATTTCAATAAATATATCAAGGAGCTGGATGGGGGCCTGTTGGAGAA
GTCGCAGTTGGGGTTGGGGCATTCGTATTCCCGTGCTAAGGTATGAGCGG
GGTGTGAGATCGAGGGAGGGAGGGTGGGAGGGAGGATGGGAAGATGATTT
GTGTTCCATGCGAACTCCTTTGTTGTCGGCAGCGATTGCGATTTCTCTTT
TGTATTTGCTCTATCGATGTATTCCTCCCTTTCCTGTATATCGACGAGGT
GTCTGTTGATGAAACCATTACTCAGCTCACTCTGACTCCACCCTACTCCC
ACACCTCTCTCCAAAACGGAAAGAGGGGGCACAGGGTGCTGAAGAGAGAC
ATGTAATCCTTCACTTTGACCTGAAGACCCTTCGTGTTTATGAATTCAGA
TTTCCTTCCTTTTTTTTTCCTCTTTTCCCTCGCTCTCCTTCTTTTTCATT
CTGTTGTGCCCGTACCTCACCCTTCCTTTATGGCTCGCAAGCATGACGCA
CTTCATAAGAATCATTCCAACCGATGCCTCATTTCATCCCCCCCGTCCCT
CTTCCATGTCTAACCTCAACTATAGGTCAAGTTCAACCCGGGCCGGTCGG
ACAACATGATCATCCAATCAATCGCCCTGCTTGACCAACTTGATAAGGAT
CTTAATACCTTCGCGATGCGTGTCCGGGAATGGTACTGCTGGCATTTTCC
CGAGCTCCGCGACTTGGTTAAGGATAATTATGTCTTCGCTCGGTGTGCTG
CCTACGTCCAGGATCGCACCACCCTGACAGAGGAGAAATTGGACGGGTTG
ACAGAGATCACGCTGGACGAGGAATTGTCGCAGAGTATTCTGACGGCGGC
CAAAACGAGCATGGGCATGGACACCTCGGCCTTCGACATGGGGAATATCG
TGGCGTTCACTACACGGATGGTGAAGCTTGCGGAGTACAGGAAGCACCTA
CACGCTTATTTGTTGGAGAAGATGGCGACGGTTGCTCCCAATCTAGGTAC
GGAAACCCTTCCTTATTCCCTCCCTCCCTCCCTCCCTCCCCCTAAACATG
TGTGCTCAATTTTCTCACTTTCCCTCCTTTTCCCCGTTTCCTTCCTCCTT
CCCTCCAGGCACACTCATTGGCGAGACCGTCGCCGCCCGGCTCATTGCAA
AGGCCGGTTCTCTCACCTCTCTCGCCAAATGCCCAGCCTCAACCATTCAA
ATCCTGGGTGCTGAGAAGGCCCTTTTCCGCGCCCTTAAAACCAAGGGAAA
CACGCCCAAGTACGGCCTCATCTACCACTCCTCGTTCATTGGTCGTGCGG
CTGCCAAGAACAAAGGACGGATCTCTCGGTATCTTGCCAATAAATGTTCT
ATTGCTTCGAGGATCGACACCTTCACAGAGGATCCAACCACAAAATATGG
AGAGAAGCTCAAGGAGCAGGTGGAGGAACGGTTAAGATTTTATGACACCG
GTGCGGCGCCAAGAAAGAACGTGGATGTGATGACGTCGGTGAGGAAAGAG
CTAGAAGCGGCGGGGGTGCTTGTGGTGGGGGCAGGAGGGGAGGATGGCGG
GAAGGAGAAGAAAAAGAAGAAGGAGAAGAAGGAAAAGAAGAAGGGGAAGG
AGGTGGCGGAAGAGGAGGAGGACGAGGAGGACGAGATGGAGGTGTCTCCG
AAGAAGGATAAGAAAAAGAGGAAGACTGATGAGGTGGAGGAGAGCGCAGA
GACGAAGAAAAAGAAGAAGAAGAAGGATAAGAAATAAAGAAGAGTGAGAA
GGGATGGGTTGAGGGACGGAGGAAACATGTGTGCAAAGATAAGTACTGGA
TGGATAAGATGAGAGAACGGAAAGTTATACGTGTGGGTAAGCGGGCGAGA
AGGAGTAGTGTGTGAGAGAGGACGAAAAATAGGAGTTGCTTTCGTTTACC
TGTGTCCTCGTTTACGTCTTGTGCTTGTTACAGGGGGCATGACGCTCGGG
ACGAGAAGCAACACCCAGACACAGAGAATCTAAGAGCGGCAGGCAGGAAG
GAAAGAACGAGGACAAGACTGGAACTGGCAGAAGCATGGAT
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Coding sequence (CDS) from alignment at chr14:712441..715331+

>NO14G02400.1 ID=NO14G02400.1|Name=NO14G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr14:712441..715331+ (Nannochloropsis oceanica)
ATGTCCTCGTACGTCCTTCACGAATCTGCCTCTGGGTACGCACTCTTCGA
ACTGGTCCAACACGACGATATTGCTTCTCTGACCGATGAGGTTCAAGCGT
CTATCCAAGACGTGCAACGCTTCGGTCGTACGGTCAAGCTTAAGGCATTC
CAGCCCTTCACCTCGGCGGAGAACGCGTTGGAAAACATGAATAGCATCTC
GGAGCATGTCTTGAGTGATGACCTCAAGCACTTTTTAGAACTGAATTTAC
CCAAGGCCAAAAAGGCGGGGAAGGGGACGGCACTTGGTGTGATAGAGCCG
GCGCTAGGCACGATAATCCAGGAGGAGTTGTCGTTTCCTTGCAAGAGTGA
TGAGGCGACAAGGGAGGTGTTGCGAGGGATAAGGTTGCATTTCAATAAAT
ATATCAAGGAGCTGGATGGGGGCCTGTTGGAGAAGTCGCAGTTGGGGTTG
GGGCATTCGTATTCCCGTGCTAAGGTCAAGTTCAACCCGGGCCGGTCGGA
CAACATGATCATCCAATCAATCGCCCTGCTTGACCAACTTGATAAGGATC
TTAATACCTTCGCGATGCGTGTCCGGGAATGGTACTGCTGGCATTTTCCC
GAGCTCCGCGACTTGGTTAAGGATAATTATGTCTTCGCTCGGTGTGCTGC
CTACGTCCAGGATCGCACCACCCTGACAGAGGAGAAATTGGACGGGTTGA
CAGAGATCACGCTGGACGAGGAATTGTCGCAGAGTATTCTGACGGCGGCC
AAAACGAGCATGGGCATGGACACCTCGGCCTTCGACATGGGGAATATCGT
GGCGTTCACTACACGGATGGTGAAGCTTGCGGAGTACAGGAAGCACCTAC
ACGCTTATTTGTTGGAGAAGATGGCGACGGTTGCTCCCAATCTAGGCACA
CTCATTGGCGAGACCGTCGCCGCCCGGCTCATTGCAAAGGCCGGTTCTCT
CACCTCTCTCGCCAAATGCCCAGCCTCAACCATTCAAATCCTGGGTGCTG
AGAAGGCCCTTTTCCGCGCCCTTAAAACCAAGGGAAACACGCCCAAGTAC
GGCCTCATCTACCACTCCTCGTTCATTGGTCGTGCGGCTGCCAAGAACAA
AGGACGGATCTCTCGGTATCTTGCCAATAAATGTTCTATTGCTTCGAGGA
TCGACACCTTCACAGAGGATCCAACCACAAAATATGGAGAGAAGCTCAAG
GAGCAGGTGGAGGAACGGTTAAGATTTTATGACACCGGTGCGGCGCCAAG
AAAGAACGTGGATGTGATGACGTCGGTGAGGAAAGAGCTAGAAGCGGCGG
GGGTGCTTGTGGTGGGGGCAGGAGGGGAGGATGGCGGGAAGGAGAAGAAA
AAGAAGAAGGAGAAGAAGGAAAAGAAGAAGGGGAAGGAGGTGGCGGAAGA
GGAGGAGGACGAGGAGGACGAGATGGAGGTGTCTCCGAAGAAGGATAAGA
AAAAGAGGAAGACTGATGAGGTGGAGGAGAGCGCAGAGACGAAGAAAAAG
AAGAAGAAGAAGGATAAGAAATAA
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Synonyms
Publications