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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:709173..712036 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02390.1 vs.
Match: EWM24570.1 (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 425.2 bits (1092), Expect = 2.700e-115 Identity = 241/339 (71.09%), Postives = 264/339 (77.88%), Query Frame = 0
Query: 164 MFLYVSSVSALYYLNGRGPNVSVSGSLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEVCPHPNRSPLYSLCVAFVFINYAQLCLPCVVVIVMLPVLCFCLPCLIRILARIQDPMRGKGATPTMISKLPLMKYRQVQEEQFRTGTAAGATANAGGAAGTEGGVGRGQGHEQQPQLSVTGVESNSTSCAICISEYAPDEDVRLLPCEHYFHASCVDEWLKVNASCPTCRASILPEHADQSTPRSSHYGTTTSA--GASSSSISSVGSAGNSPGG-GLGGNLPVAISPPSSISPSGSIPM-PGTPMHGGGREGGREGGRSSQSHHQR--------GDHLV 491
MFLYVSSVSALY LNGR P + LMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVE+CPHPNRSP+YSLCVAFVFINYAQLCLPCVVVI+MLPVLCFCLPCLIRILARIQDPMRGKGATP+MI+KLP+MKYRQ+Q E+ ATA+AG G + QG EQ Q+SVTGVESNSTSCA+CISEYAPDEDVRLLPC HYFHASCVDEWLKVNASCPTCRASILPE A+Q TPRSSHYGTT++ G+S+S+ S GS GNSPGG G G P+ SP S S S +IP PGTP GG GGR + Q Q+ GDHLV
Sbjct: 1 MFLYVSSVSALYRLNGRMPATT---RLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEK-------AATASAGSLEG-QAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLS--SASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp ACAGCGCTTTACCGTCGCATGCTCGCTGGAGGCCCGAACAGCCAGCAGCT GAGCGCCACATAAGCAGCAAGAGGGGCCAGTAAGGAGCTTGAGCAGGAGC GACTGCTGCTGCTACGCCCCCTCCTACCCTACCCTGAAAAGGAAGACGAC GCATAGTTCACGGCGCGTGGACACCCACACTCAGGTCAGCCATTGCGTCG AGGGCTGACCGCGACGCGCCTGGGCCGTTGCAAGCGGTGGAAATGAGCTA CGTGCCCATGTCCAGGGCATCCCACTCGGGAAGCACCGGCGGTGTGGGGG GCAGCATGACAGGCAACAGCAGCAGCAGTGGTGGACAGACCCAATTAGAA ATGGATGAGGCGCTAGCCCGACAGCTGCAACGAGCTGAGCTGGACGGGAT CAGCACTCCCTTAATTTTAGGAGGAGGGCCGGGTGGTGGGGGAGGAGGTG GGTCGGGAGTGGGTGGGAGTGGCGGAGTAGGAGGAGGCGGCGGTGGGGGG GGGGGAGGGCGGGAAGGCCCTATCGACGAAGCCAGACAAACGCGGTTGAA CGCGTTGCAGAATGTGCGAGAGGTTCGGAGTGCGAGCTTTGCGTTGTGCA TTGTATTGTTGGTGAACATTCCCCAGATCATCGCGGCGATTGTGATCTTG TCCAAGTACTGGTACGATGACACGTGTGTGGCAACCGAGACGGCGAAGTG GAAGACTTACGCCTTGATTGCGGCGATGCGTATGTTTTTGTACGTGTCCT CCGTGTCAGCGCTGTATTATTTGAACGGACGGGGGCCGAATGTCAGTGTG AGTGGGTCGTTGATGCGGTTTTTGAGCCATGCAAGGAACGGACTAGATGC GTTTGGACTGATCTGGTTTGTGGTTGGAAATATGTGGTTATTCGGAGGGG ACGTGGAGGTTTGCCCCCACCCCAACCGGAGCCCGCTGTACAGCTTGTGT GTAGCCTTTGTCTTCATCAATTATGCTCAGCTGTGCCTGCCCTGCGTGGT GGTGATCGTGATGTTGCCAGTTTTGTGCTTTTGCTTGCCGTGCCTAATTC GAATTTTGGCGCGAATCCAAGACCCGATGCGAGGAAAGGGCGCAACGCCC ACAATGATCAGTAAGCTACCACTCATGAAATACCGGCAAGTCCAAGAGGA GCAATTTAGAACAGGAACAGCAGCAGGAGCAACGGCAAACGCGGGAGGTG CAGCAGGGACAGAGGGAGGGGTAGGAAGAGGGCAGGGGCATGAACAGCAG CCGCAGTTGTCAGTGACGGGGGTTGAGAGTAACAGCACGTCGTGCGCAAT TTGTATCAGTGAATACGCGCCGGACGAGGACGTGAGACTATTACCATGTG AACACTATTTCCATGCTTCGTGCGTCGACGAGTGGCTTAAGGTTAATGCC TCCTGCCCCACTTGCCGTGCCTCCATCCTCCCCGAACATGCCGACCAATC CACACCCCGTTCTTCCCACTATGGCACCACAACTTCAGCTGGAGCCAGCA GCAGCAGTATCAGTAGCGTTGGCAGCGCAGGGAACAGCCCGGGAGGAGGT CTGGGAGGAAATCTTCCTGTTGCGATCTCCCCCCCGTCCTCTATCTCGCC AAGTGGCTCAATTCCGATGCCTGGCACGCCGATGCATGGTGGGGGAAGGG AGGGAGGGAGGGAGGGCGGGCGTTCATCGCAGTCGCATCACCAACGAGGG GATCATTTAGTGTAGACGGACGGAGAAAGCGAAAACGGACAAGACAAATG GGGTCAGAAATGTGTCTTGCAACGAGATGGGCAATTGGACGAGCTGCAGT ATCATTACAGACACGTAGAAGAAGAGGAAGGAGGGCGGAAGGATGCATCC TTTCTACCCCTTTCTTTGGTCGGTTGGCCTTTCGTGTGTGTTTCATGTGT CTTATTGCATGTGGTCGTGGCTGTGAGCTTTTGTTTGAGTAGGTAGCGGT GGTATGTACAGGCCACTCTCGGGGAAAGAGGTGGAAGGGAACGATGGAGA GAGAGACGCGATGCGATGGAAGGGGAGCGTTAGGTCCCCTCCCTTTTTGG GAAAGACATGATAAGAATCAAAAATATCAGAGACAGAACAACGACGAGGA GATATATACAGAAGAGAGGAAGAAGGAATAAGAGGAGACGCGCGTGCGCT CTTACTCGAAAAAGAAAATTTGGGATTTGAAAAGAGAAAAATATAGGAAT AATAGTAGTATGTAGTAGCCTTTTTCTTTGTGTTGCTTCATCCGGGAGAC ACTGCCGAAAATTCTGGCAAGAAAAAAACTTCTGGTTTAGGACG back to topprotein sequence of NO14G02390.1 >NO14G02390.1-protein ID=NO14G02390.1-protein|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MSYVPMSRASHSGSTGGVGGSMTGNSSSSGGQTQLEMDEALARQLQRAEL DGISTPLILGGGPGGGGGGGSGVGGSGGVGGGGGGGGGGREGPIDEARQT RLNALQNVREVRSASFALCIVLLVNIPQIIAAIVILSKYWYDDTCVATET AKWKTYALIAAMRMFLYVSSVSALYYLNGRGPNVSVSGSLMRFLSHARNG LDAFGLIWFVVGNMWLFGGDVEVCPHPNRSPLYSLCVAFVFINYAQLCLP CVVVIVMLPVLCFCLPCLIRILARIQDPMRGKGATPTMISKLPLMKYRQV QEEQFRTGTAAGATANAGGAAGTEGGVGRGQGHEQQPQLSVTGVESNSTS CAICISEYAPDEDVRLLPCEHYFHASCVDEWLKVNASCPTCRASILPEHA DQSTPRSSHYGTTTSAGASSSSISSVGSAGNSPGGGLGGNLPVAISPPSS ISPSGSIPMPGTPMHGGGREGGREGGRSSQSHHQRGDHLV* back to topmRNA from alignment at chr14:709173..712036- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp|location=Sequence derived from alignment at chr14:709173..712036- (Nannochloropsis oceanica) ACAGCGCTTTACCGTCGCATGCTCGCTGGAGGCCCGAACAGCCAGCAGCT
GAGCGCCACATAAGCAGCAAGAGGGGCCAGTAAGGAGCTTGAGCAGGAGC
GACTGCTGCTGCTACGCCCCCTCCTACCCTACCCTGAAAAGGAAGACGAC
GCATAGTTCACGGCGCGTGGACACCCACACTCAGGTATGTGAGAGAGGGA
GGTGGAGAAGGAGAAGCAGGAGGGTATAGAGGGGATGAAGTAGCTATCTT
GGCACGGGTGTTTCGGAAGGAGAGTCGACTGAAACGGGAGGGGACGTGGC
GGAAGAGAAGGAGGGCATTCATGAGAAAAGGGCAGGCAACCCGAGGCCTT
CTAAGAAACGGAGATATAAATATAAGAACAGGGATCATCTTCCGTTTGAC
CCTATCGACACAAGAATCTATCGATTCTCAACCTTATTTTAAACCCAACT
AATTGATCCCCTCTCTCCGCACTCGTTCTCCTTCCATTCCCGTCCACAGG
TCAGCCATTGCGTCGAGGGCTGACCGCGACGCGCCTGGGCCGTTGCAAGC
GGTGGAAATGAGCTACGTGCCCATGTCCAGGGCATCCCACTCGGTAGGTA
GTGAATGAGGGAGGGAGCGAGGGAAGGGAGGGATGAAGCGAGGTAAGGTG
TATATCTGTCCTACCATGTCTCCTCTTTATCCACGCCCCAATGCATGCTC
ATCACCCATTTCCCCCTCATCTTCAATCTACTCTCATTGTTATTTATCAG
GGAAGCACCGGCGGTGTGGGGGGCAGCATGACAGGCAACAGCAGCAGCAG
TGGTGGACAGACCCAATTAGAAATGGATGAGGCGCTAGCCCGACAGCTGC
AACGAGCTGAGCTGGACGGGATCAGCACTCCCTTAATTTTAGGAGGAGGG
CCGGGTGGTGGGGGAGGAGGTGGGTCGGGAGTGGGTGGGAGTGGCGGAGT
AGGAGGAGGCGGCGGTGGGGGGGGGGGAGGGCGGGAAGGCCCTATCGACG
AAGCCAGACAAACGCGGTTGAACGCGTTGCAGAATGTGCGAGAGGTTCGG
AGTGCGAGCTTTGCGTTGTGCATTGTATTGTTGGTGAACATTCCCCAGAT
CATCGCGGCGATTGTGATCTTGTCCAAGTACTGGTACGATGACACGTGTG
TGGCAACCGAGACGGCGAAGTGGAAGACTTACGCCTTGATTGCGGCGATG
CGTATGTTTTTGTACGTGTCCTCCGTGTCAGCGCTGTATTATTTGAACGG
ACGGGGGCCGAATGTCAGTGTGAGTGGGTCGTTGATGCGGTTTTTGAGCC
ATGCAAGGAACGGACTAGATGCGTTTGGACTGATCTGGTTTGTGGTTGGA
AATATGTGGTTATTCGGAGGGGACGTGGAGGTTTGCCCCCACCCCAACCG
GAGCCCGCTGTACAGCTTGTGTGTAGCCTTTGTCTTCATCAATTATGCTC
AGCTGTGCCTGCCCTGCGTGGTGGTGATCGTGATGTTGCCAGTTTTGTGC
TTTTGCTTGCCGTGCCTAATTCGAATTTTGGCGCGAATCCAAGACCCGAT
GCGAGGAAAGGGCGCAACGCCCACAATGATCAGTAAGCTACCACTCATGA
AATACCGGCAAGTCCAAGAGGAGCAATTTAGAACAGGAACAGCAGCAGGA
GCAACGGCAAACGCGGGAGGTGCAGCAGGGACAGAGGGAGGGGTAGGAAG
AGGGCAGGGGCATGAACAGCAGCCGCAGTTGTCAGTGACGGGGGTTGAGA
GTAACAGCACGTCGTGCGCAATTTGTATCAGTGAATACGCGCCGGACGAG
GACGTGAGACTATTACCATGTGAACACTATTTCCATGCTTCGGTAAGTGA
GCAAAAATGGTTTTTTTAATCGCTCCCCACCCGTTCTTACCCTCCTTCCC
TCCCTCCCTTCCATCCTCCCTCCCGCCCATTTTGAATCAGTGCGTCGACG
AGTGGCTTAAGGTTAATGCCTCCTGCCCCACTTGCCGTGCCTCCATCCTC
CCCGAACATGCCGACCAATCCACACCCCGTTCTTCCCACTATGGCACCAC
AACTTCAGCTGGAGCCAGCAGCAGCAGTATCAGTAGCGTTGGCAGCGCAG
GGAACAGCCCGGGAGGAGGTCTGGGAGGAAATCTTCCTGTTGCGATCTCC
CCCCCGTCCTCTATCTCGCCAAGTGGCTCAATTCCGATGCCTGGCACGCC
GATGCATGGTGGGGGAAGGGAGGGAGGGAGGGAGGGCGGGCGTTCATCGC
AGTCGCATCACCAACGAGGGGATCATTTAGTGTAGACGGACGGAGAAAGC
GAAAACGGACAAGACAAATGGGGTCAGAAATGTGTCTTGCAACGAGATGG
GCAATTGGACGAGCTGCAGTATCATTACAGACACGTAGAAGAAGAGGAAG
GAGGGCGGAAGGATGCATCCTTTCTACCCCTTTCTTTGGTCGGTTGGCCT
TTCGTGTGTGTTTCATGTGTCTTATTGCATGTGGTCGTGGCTGTGAGCTT
TTGTTTGAGTAGGTAGCGGTGGTATGTACAGGCCACTCTCGGGGAAAGAG
GTGGAAGGGAACGATGGAGAGAGAGACGCGATGCGATGGAAGGGGAGCGT
TAGGTCCCCTCCCTTTTTGGGAAAGACATGATAAGAATCAAAAATATCAG
AGACAGAACAACGACGAGGAGATATATACAGAAGAGAGGAAGAAGGAATA
AGAGGAGACGCGCGTGCGCTCTTACTCGAAAAAGAAAATTTGGGATTTGA
AAAGAGAAAAATATAGGAATAATAGTAGTATGTAGTAGCCTTTTTCTTTG
TGTTGCTTCATCCGGGAGACACTGCCGAAAATTCTGGCAAGAAAAAAACT
TCTGGTTTAGGACG back to topCoding sequence (CDS) from alignment at chr14:709173..712036- >NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr14:709173..712036- (Nannochloropsis oceanica) ATGAGCTACGTGCCCATGTCCAGGGCATCCCACTCGGGAAGCACCGGCGG TGTGGGGGGCAGCATGACAGGCAACAGCAGCAGCAGTGGTGGACAGACCC AATTAGAAATGGATGAGGCGCTAGCCCGACAGCTGCAACGAGCTGAGCTG GACGGGATCAGCACTCCCTTAATTTTAGGAGGAGGGCCGGGTGGTGGGGG AGGAGGTGGGTCGGGAGTGGGTGGGAGTGGCGGAGTAGGAGGAGGCGGCG GTGGGGGGGGGGGAGGGCGGGAAGGCCCTATCGACGAAGCCAGACAAACG CGGTTGAACGCGTTGCAGAATGTGCGAGAGGTTCGGAGTGCGAGCTTTGC GTTGTGCATTGTATTGTTGGTGAACATTCCCCAGATCATCGCGGCGATTG TGATCTTGTCCAAGTACTGGTACGATGACACGTGTGTGGCAACCGAGACG GCGAAGTGGAAGACTTACGCCTTGATTGCGGCGATGCGTATGTTTTTGTA CGTGTCCTCCGTGTCAGCGCTGTATTATTTGAACGGACGGGGGCCGAATG TCAGTGTGAGTGGGTCGTTGATGCGGTTTTTGAGCCATGCAAGGAACGGA CTAGATGCGTTTGGACTGATCTGGTTTGTGGTTGGAAATATGTGGTTATT CGGAGGGGACGTGGAGGTTTGCCCCCACCCCAACCGGAGCCCGCTGTACA GCTTGTGTGTAGCCTTTGTCTTCATCAATTATGCTCAGCTGTGCCTGCCC TGCGTGGTGGTGATCGTGATGTTGCCAGTTTTGTGCTTTTGCTTGCCGTG CCTAATTCGAATTTTGGCGCGAATCCAAGACCCGATGCGAGGAAAGGGCG CAACGCCCACAATGATCAGTAAGCTACCACTCATGAAATACCGGCAAGTC CAAGAGGAGCAATTTAGAACAGGAACAGCAGCAGGAGCAACGGCAAACGC GGGAGGTGCAGCAGGGACAGAGGGAGGGGTAGGAAGAGGGCAGGGGCATG AACAGCAGCCGCAGTTGTCAGTGACGGGGGTTGAGAGTAACAGCACGTCG TGCGCAATTTGTATCAGTGAATACGCGCCGGACGAGGACGTGAGACTATT ACCATGTGAACACTATTTCCATGCTTCGTGCGTCGACGAGTGGCTTAAGG TTAATGCCTCCTGCCCCACTTGCCGTGCCTCCATCCTCCCCGAACATGCC GACCAATCCACACCCCGTTCTTCCCACTATGGCACCACAACTTCAGCTGG AGCCAGCAGCAGCAGTATCAGTAGCGTTGGCAGCGCAGGGAACAGCCCGG GAGGAGGTCTGGGAGGAAATCTTCCTGTTGCGATCTCCCCCCCGTCCTCT ATCTCGCCAAGTGGCTCAATTCCGATGCCTGGCACGCCGATGCATGGTGG GGGAAGGGAGGGAGGGAGGGAGGGCGGGCGTTCATCGCAGTCGCATCACC AACGAGGGGATCATTTAGTGTAG back to top
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