NO14G02160.1, NO14G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02160.1
Unique NameNO14G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1491
Alignment locationchr14:650937..652427 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:650937..652427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02160.1 vs.
Match: EWM24592.1 (Basic-leucine zipper domain protein [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 3.300e-20
Identity = 181/465 (38.92%), Postives = 245/465 (52.69%), Query Frame = 0 
Query:    1 MSTHVTASSADLRGESKGGLNGGACTTSPSFPLVQANPHPLKPSFSHNSISSSSSSKDCRTDDDSLSEGSRSPSSSSLSSASSSCYSSSSSSSSSSCNPASSYKPRSRMEKMMRMSQEQK-----NREVKEGKAVAALANAAAASEYIVVKREVPVTAPATSAATTTAAVPSYGSSPFGPFPASQSGPASHFSNRAPTAAASTKRSSNGKVKGSSSSSSSSSSSSSSSPNTSTESLVGMLPKVGSFLSSSSSSSSSSVPASAPVSFAAVSNSNSSNNHNKFNSSFSSGLNSLSAAAVMDSYSLLSFHTPSNNSNNMSSNSSVCSV-EFEATEEQKATMTKKELRMLKNRESAARSRKRKRDMMEQLEGEVQALRNHNRALKARLDVYVATYGELQQHPHQHFNRQQQGDVGMAQQQQQQQQQQQHMRQVQVQRQQQQQQRQQQQDNGQQQRLQLLKDDEKENEKE 460
            MS H  ASSADLRGESKGGL+GG          V+ +PH    + +  S  S+SSSKD RTDD+SLS+GSRSPSSSSLSSAS  C SS++ +++     A +YKPRSRMEKMM MSQ+Q+     +R  +E KA+AA A  A+      V+ E P        A   A+ PS+   P    P++   PA   +  +PT A    R   G V   S  S   S      P     SL          + +  +++ S V     V   + + ++ +   + ++     G ++ SA A           + ++++  MS NSS CSV EFE TEEQKATMTKKELRMLKNRESAARSRKRKRD+ME+LE EV+ LR  NR LKA+LDVY  TYGEL        +    G  G+ +   Q+  Q  H           +Q   ++     + R   ++D+  + E+E
Sbjct:    1 MSAHNAASSADLRGESKGGLDGGVRNMHAH--AVRTHPHMSSSTSNEGSFVSTSSSKDGRTDDESLSDGSRSPSSSSLSSAS--CASSTTMTAN-----APAYKPRSRMEKMMHMSQQQQYQDHEDRLEEEEKALAAAAVIAS------VRHEDPTVWQGNKKAVARAS-PSH---PLSSAPSAAPRPAP--APGSPTYALDVTR--RGAVPSQSGGSGVDSRPEPEKPTGFPPSLP---------VDACHAAADSLVSMFPQVGSFSSTLASKTAKDSGWSDHGREGKSNPSAPAP----------SSASSAPTMSRNSSFCSVDEFEPTEEQKATMTKKELRMLKNRESAARSRKRKRDIMERLEEEVRTLRVQNRVLKAKLDVYQTTYGEL--------HLASDGMQGVGRSISQENLQMGH-------GDGDKQGHTREAGRRAESRAPRIQDNRADEEEE 408
The following BLAST results are available for this feature:
BLAST of NO14G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24592.13.300e-2038.92Basic-leucine zipper domain protein [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02160NO14G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02160.1NO14G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02160.1.cds1NO14G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02160.1 ID=NO14G02160.1|Name=NO14G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
ATGTCCACACACGTAACGGCTTCCTCGGCCGATCTTCGAGGAGAATCCAA
AGGGGGACTAAATGGGGGCGCCTGCACCACCAGCCCCTCCTTTCCGTTAG
TGCAGGCAAACCCCCATCCTCTCAAGCCTTCTTTCAGTCACAACAGCATC
AGCAGCAGCAGCAGCAGTAAGGACTGTCGCACGGACGACGATTCTCTGTC
GGAGGGCAGCCGTAGCCCTTCCTCCAGCTCCTTGTCCTCCGCCTCTTCTT
CCTGCTACTCGTCCTCTTCCTCCTCCTCGTCTTCTTCCTGTAACCCTGCC
TCTTCCTACAAGCCCCGTTCCCGGATGGAAAAAATGATGCGCATGTCTCA
AGAGCAAAAGAACCGGGAGGTCAAGGAGGGCAAGGCAGTCGCAGCTTTAG
CCAATGCGGCTGCTGCTTCCGAGTACATCGTCGTCAAGCGCGAGGTTCCT
GTCACTGCCCCTGCCACTTCTGCTGCTACCACTACTGCTGCTGTGCCTTC
TTACGGCTCTTCTCCATTTGGACCTTTTCCAGCCTCTCAGTCTGGGCCTG
CCTCGCATTTTTCTAACCGTGCGCCTACTGCGGCGGCTTCCACAAAGAGA
AGCAGCAACGGCAAGGTCAAGGGCTCTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTCCCAACACGTCGACAGAATCACTTGTAGGAA
TGCTACCAAAAGTTGGCTCATTCCTCTCCTCCTCCTCCTCCTCCTCCTCT
TCCTCTGTCCCTGCTTCTGCTCCTGTTTCCTTTGCCGCAGTCAGCAACAG
CAACAGCAGCAACAACCATAACAAATTTAATAGCAGCTTCAGTAGCGGGT
TGAACAGCCTTTCTGCTGCCGCCGTGATGGACAGTTATAGTCTTCTGTCC
TTCCACACCCCCAGCAACAACAGCAACAACATGAGCAGCAACAGCAGCGT
TTGCTCGGTGGAGTTTGAGGCCACGGAGGAACAGAAAGCCACGATGACCA
AGAAGGAGTTGCGCATGTTGAAAAACAGGGAGTCCGCAGCAAGGTCACGT
AAAAGGAAGAGGGACATGATGGAGCAGTTGGAAGGAGAAGTCCAAGCCCT
CCGCAACCATAATCGTGCGCTTAAGGCGAGGCTGGACGTGTATGTGGCAA
CATACGGTGAATTGCAGCAACACCCGCATCAGCACTTCAACCGGCAGCAG
CAGGGAGATGTAGGGATGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATATGCGCCAAGTTCAGGTGCAGCGGCAGCAGCAGCAACAGCAGC
GGCAGCAACAGCAAGACAATGGGCAGCAACAGCGATTGCAGCTGCTGAAA
GATGATGAAAAAGAGAACGAGAAGGAGCGTAGGAGGAGGGGGGAAGGAAT
GCGGGAGGAAGTTGACTCACTGGTGACCAGTTCGGACGACGAAGATGATG
ATGGTGATGATGATGCTTGCGATGATGAGCAAGACGATTGA
back to top

protein sequence of NO14G02160.1

>NO14G02160.1-protein ID=NO14G02160.1-protein|Name=NO14G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MSTHVTASSADLRGESKGGLNGGACTTSPSFPLVQANPHPLKPSFSHNSI
SSSSSSKDCRTDDDSLSEGSRSPSSSSLSSASSSCYSSSSSSSSSSCNPA
SSYKPRSRMEKMMRMSQEQKNREVKEGKAVAALANAAAASEYIVVKREVP
VTAPATSAATTTAAVPSYGSSPFGPFPASQSGPASHFSNRAPTAAASTKR
SSNGKVKGSSSSSSSSSSSSSSSPNTSTESLVGMLPKVGSFLSSSSSSSS
SSVPASAPVSFAAVSNSNSSNNHNKFNSSFSSGLNSLSAAAVMDSYSLLS
FHTPSNNSNNMSSNSSVCSVEFEATEEQKATMTKKELRMLKNRESAARSR
KRKRDMMEQLEGEVQALRNHNRALKARLDVYVATYGELQQHPHQHFNRQQ
QGDVGMAQQQQQQQQQQQHMRQVQVQRQQQQQQRQQQQDNGQQQRLQLLK
DDEKENEKERRRRGEGMREEVDSLVTSSDDEDDDGDDDACDDEQDD*
back to top

mRNA from alignment at chr14:650937..652427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02160.1 ID=NO14G02160.1|Name=NO14G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp|location=Sequence derived from alignment at chr14:650937..652427+ (Nannochloropsis oceanica)
ATGTCCACACACGTAACGGCTTCCTCGGCCGATCTTCGAGGAGAATCCAA
AGGGGGACTAAATGGGGGCGCCTGCACCACCAGCCCCTCCTTTCCGTTAG
TGCAGGCAAACCCCCATCCTCTCAAGCCTTCTTTCAGTCACAACAGCATC
AGCAGCAGCAGCAGCAGTAAGGACTGTCGCACGGACGACGATTCTCTGTC
GGAGGGCAGCCGTAGCCCTTCCTCCAGCTCCTTGTCCTCCGCCTCTTCTT
CCTGCTACTCGTCCTCTTCCTCCTCCTCGTCTTCTTCCTGTAACCCTGCC
TCTTCCTACAAGCCCCGTTCCCGGATGGAAAAAATGATGCGCATGTCTCA
AGAGCAAAAGAACCGGGAGGTCAAGGAGGGCAAGGCAGTCGCAGCTTTAG
CCAATGCGGCTGCTGCTTCCGAGTACATCGTCGTCAAGCGCGAGGTTCCT
GTCACTGCCCCTGCCACTTCTGCTGCTACCACTACTGCTGCTGTGCCTTC
TTACGGCTCTTCTCCATTTGGACCTTTTCCAGCCTCTCAGTCTGGGCCTG
CCTCGCATTTTTCTAACCGTGCGCCTACTGCGGCGGCTTCCACAAAGAGA
AGCAGCAACGGCAAGGTCAAGGGCTCTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTCCCAACACGTCGACAGAATCACTTGTAGGAA
TGCTACCAAAAGTTGGCTCATTCCTCTCCTCCTCCTCCTCCTCCTCCTCT
TCCTCTGTCCCTGCTTCTGCTCCTGTTTCCTTTGCCGCAGTCAGCAACAG
CAACAGCAGCAACAACCATAACAAATTTAATAGCAGCTTCAGTAGCGGGT
TGAACAGCCTTTCTGCTGCCGCCGTGATGGACAGTTATAGTCTTCTGTCC
TTCCACACCCCCAGCAACAACAGCAACAACATGAGCAGCAACAGCAGCGT
TTGCTCGGTGGAGTTTGAGGCCACGGAGGAACAGAAAGCCACGATGACCA
AGAAGGAGTTGCGCATGTTGAAAAACAGGGAGTCCGCAGCAAGGTCACGT
AAAAGGAAGAGGGACATGATGGAGCAGTTGGAAGGAGAAGTCCAAGCCCT
CCGCAACCATAATCGTGCGCTTAAGGCGAGGCTGGACGTGTATGTGGCAA
CATACGGTGAATTGCAGCAACACCCGCATCAGCACTTCAACCGGCAGCAG
CAGGGAGATGTAGGGATGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATATGCGCCAAGTTCAGGTGCAGCGGCAGCAGCAGCAACAGCAGC
GGCAGCAACAGCAAGACAATGGGCAGCAACAGCGATTGCAGCTGCTGAAA
GATGATGAAAAAGAGAACGAGAAGGAGCGTAGGAGGAGGGGGGAAGGAAT
GCGGGAGGAAGTTGACTCACTGGTGACCAGTTCGGACGACGAAGATGATG
ATGGTGATGATGATGCTTGCGATGATGAGCAAGACGATTGA
back to top

Coding sequence (CDS) from alignment at chr14:650937..652427+

>NO14G02160.1 ID=NO14G02160.1|Name=NO14G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=1491bp|location=Sequence derived from alignment at chr14:650937..652427+ (Nannochloropsis oceanica)
ATGTCCACACACGTAACGGCTTCCTCGGCCGATCTTCGAGGAGAATCCAA
AGGGGGACTAAATGGGGGCGCCTGCACCACCAGCCCCTCCTTTCCGTTAG
TGCAGGCAAACCCCCATCCTCTCAAGCCTTCTTTCAGTCACAACAGCATC
AGCAGCAGCAGCAGCAGTAAGGACTGTCGCACGGACGACGATTCTCTGTC
GGAGGGCAGCCGTAGCCCTTCCTCCAGCTCCTTGTCCTCCGCCTCTTCTT
CCTGCTACTCGTCCTCTTCCTCCTCCTCGTCTTCTTCCTGTAACCCTGCC
TCTTCCTACAAGCCCCGTTCCCGGATGGAAAAAATGATGCGCATGTCTCA
AGAGCAAAAGAACCGGGAGGTCAAGGAGGGCAAGGCAGTCGCAGCTTTAG
CCAATGCGGCTGCTGCTTCCGAGTACATCGTCGTCAAGCGCGAGGTTCCT
GTCACTGCCCCTGCCACTTCTGCTGCTACCACTACTGCTGCTGTGCCTTC
TTACGGCTCTTCTCCATTTGGACCTTTTCCAGCCTCTCAGTCTGGGCCTG
CCTCGCATTTTTCTAACCGTGCGCCTACTGCGGCGGCTTCCACAAAGAGA
AGCAGCAACGGCAAGGTCAAGGGCTCTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTCCCAACACGTCGACAGAATCACTTGTAGGAA
TGCTACCAAAAGTTGGCTCATTCCTCTCCTCCTCCTCCTCCTCCTCCTCT
TCCTCTGTCCCTGCTTCTGCTCCTGTTTCCTTTGCCGCAGTCAGCAACAG
CAACAGCAGCAACAACCATAACAAATTTAATAGCAGCTTCAGTAGCGGGT
TGAACAGCCTTTCTGCTGCCGCCGTGATGGACAGTTATAGTCTTCTGTCC
TTCCACACCCCCAGCAACAACAGCAACAACATGAGCAGCAACAGCAGCGT
TTGCTCGGTGGAGTTTGAGGCCACGGAGGAACAGAAAGCCACGATGACCA
AGAAGGAGTTGCGCATGTTGAAAAACAGGGAGTCCGCAGCAAGGTCACGT
AAAAGGAAGAGGGACATGATGGAGCAGTTGGAAGGAGAAGTCCAAGCCCT
CCGCAACCATAATCGTGCGCTTAAGGCGAGGCTGGACGTGTATGTGGCAA
CATACGGTGAATTGCAGCAACACCCGCATCAGCACTTCAACCGGCAGCAG
CAGGGAGATGTAGGGATGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATATGCGCCAAGTTCAGGTGCAGCGGCAGCAGCAGCAACAGCAGC
GGCAGCAACAGCAAGACAATGGGCAGCAACAGCGATTGCAGCTGCTGAAA
GATGATGAAAAAGAGAACGAGAAGGAGCGTAGGAGGAGGGGGGAAGGAAT
GCGGGAGGAAGTTGACTCACTGGTGACCAGTTCGGACGACGAAGATGATG
ATGGTGATGATGATGCTTGCGATGATGAGCAAGACGATTGA
back to top
Synonyms
Publications