NO14G02160, NO14G02160 (gene) Nannochloropsis oceanica

Overview
NameNO14G02160
Unique NameNO14G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1491
Alignment locationchr14:650937..652427 +

Link to JBrowse

Properties
Property NameValue
DescriptionBasic-leucine zipper domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:650937..652427 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
[Close]
BLAST of NO14G02160 vs. NCBI_GenBank
Match: EWM24592.1 (Basic-leucine zipper domain protein [Nannochloropsis gaditana])

HSP 1 Score: 104.8 bits (260), Expect = 8.100e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0 
Query:  316 SVCSV-EFEATEEQKATMTKKELRMLKNRESAARSRKRKRDMMEQLEGEVQALRNHNRALKARLDVYVATYGEL 389
            S CSV EFE TEEQKATMTKKELRMLKNRESAARSRKRKRD+ME+LE EV+ LR  NR LKA+LDVY  TYGEL
Sbjct:  279 SFCSVDEFEPTEEQKATMTKKELRMLKNRESAARSRKRKRDIMERLEEEVRTLRVQNRVLKAKLDVYQTTYGEL 352
The following BLAST results are available for this feature:
BLAST of NO14G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24592.18.100e-1981.08Basic-leucine zipper domain protein [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002433NSK002433Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02160.1NO14G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100062g17gene5893Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02160.1NO14G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02160 ID=NO14G02160|Name=NO14G02160|organism=Nannochloropsis oceanica|type=gene|length=1491bp
ATGTCCACACACGTAACGGCTTCCTCGGCCGATCTTCGAGGAGAATCCAA
AGGGGGACTAAATGGGGGCGCCTGCACCACCAGCCCCTCCTTTCCGTTAG
TGCAGGCAAACCCCCATCCTCTCAAGCCTTCTTTCAGTCACAACAGCATC
AGCAGCAGCAGCAGCAGTAAGGACTGTCGCACGGACGACGATTCTCTGTC
GGAGGGCAGCCGTAGCCCTTCCTCCAGCTCCTTGTCCTCCGCCTCTTCTT
CCTGCTACTCGTCCTCTTCCTCCTCCTCGTCTTCTTCCTGTAACCCTGCC
TCTTCCTACAAGCCCCGTTCCCGGATGGAAAAAATGATGCGCATGTCTCA
AGAGCAAAAGAACCGGGAGGTCAAGGAGGGCAAGGCAGTCGCAGCTTTAG
CCAATGCGGCTGCTGCTTCCGAGTACATCGTCGTCAAGCGCGAGGTTCCT
GTCACTGCCCCTGCCACTTCTGCTGCTACCACTACTGCTGCTGTGCCTTC
TTACGGCTCTTCTCCATTTGGACCTTTTCCAGCCTCTCAGTCTGGGCCTG
CCTCGCATTTTTCTAACCGTGCGCCTACTGCGGCGGCTTCCACAAAGAGA
AGCAGCAACGGCAAGGTCAAGGGCTCTAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTCCCAACACGTCGACAGAATCACTTGTAGGAA
TGCTACCAAAAGTTGGCTCATTCCTCTCCTCCTCCTCCTCCTCCTCCTCT
TCCTCTGTCCCTGCTTCTGCTCCTGTTTCCTTTGCCGCAGTCAGCAACAG
CAACAGCAGCAACAACCATAACAAATTTAATAGCAGCTTCAGTAGCGGGT
TGAACAGCCTTTCTGCTGCCGCCGTGATGGACAGTTATAGTCTTCTGTCC
TTCCACACCCCCAGCAACAACAGCAACAACATGAGCAGCAACAGCAGCGT
TTGCTCGGTGGAGTTTGAGGCCACGGAGGAACAGAAAGCCACGATGACCA
AGAAGGAGTTGCGCATGTTGAAAAACAGGGAGTCCGCAGCAAGGTCACGT
AAAAGGAAGAGGGACATGATGGAGCAGTTGGAAGGAGAAGTCCAAGCCCT
CCGCAACCATAATCGTGCGCTTAAGGCGAGGCTGGACGTGTATGTGGCAA
CATACGGTGAATTGCAGCAACACCCGCATCAGCACTTCAACCGGCAGCAG
CAGGGAGATGTAGGGATGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATATGCGCCAAGTTCAGGTGCAGCGGCAGCAGCAGCAACAGCAGC
GGCAGCAACAGCAAGACAATGGGCAGCAACAGCGATTGCAGCTGCTGAAA
GATGATGAAAAAGAGAACGAGAAGGAGCGTAGGAGGAGGGGGGAAGGAAT
GCGGGAGGAAGTTGACTCACTGGTGACCAGTTCGGACGACGAAGATGATG
ATGGTGATGATGATGCTTGCGATGATGAGCAAGACGATTGA
back to top

protein sequence of NO14G02160.1

>NO14G02160.1-protein ID=NO14G02160.1-protein|Name=NO14G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MSTHVTASSADLRGESKGGLNGGACTTSPSFPLVQANPHPLKPSFSHNSI
SSSSSSKDCRTDDDSLSEGSRSPSSSSLSSASSSCYSSSSSSSSSSCNPA
SSYKPRSRMEKMMRMSQEQKNREVKEGKAVAALANAAAASEYIVVKREVP
VTAPATSAATTTAAVPSYGSSPFGPFPASQSGPASHFSNRAPTAAASTKR
SSNGKVKGSSSSSSSSSSSSSSSPNTSTESLVGMLPKVGSFLSSSSSSSS
SSVPASAPVSFAAVSNSNSSNNHNKFNSSFSSGLNSLSAAAVMDSYSLLS
FHTPSNNSNNMSSNSSVCSVEFEATEEQKATMTKKELRMLKNRESAARSR
KRKRDMMEQLEGEVQALRNHNRALKARLDVYVATYGELQQHPHQHFNRQQ
QGDVGMAQQQQQQQQQQQHMRQVQVQRQQQQQQRQQQQDNGQQQRLQLLK
DDEKENEKERRRRGEGMREEVDSLVTSSDDEDDDGDDDACDDEQDD*
back to top
Synonyms
Publications