NO14G00490, NO14G00490 (gene) Nannochloropsis oceanica

Overview
NameNO14G00490
Unique NameNO14G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length294
Alignment locationchr14:191364..191657 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:191364..191657 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G00490 vs. NCBI_GenBank
Match: EWM19967.1 (hypothetical protein Naga_102579g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 1.100e-20
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:    1 MYKVHTPNQTYHKSADFFLVTHRDPYDMVCPQAKMFAVIFFKDLNQALRSDHTMAQDEKRIFNLAEAAGPENALHMHSSALHSIEGMTEVVEAMA 96
            +YK H  +Q YH SADFFLVTHRDPYDMVC    MF  +FF D  +A+ S   MA +EKRI  +A  +G  +ALH+H SAL+S E M +VVEAMA
Sbjct:   14 VYKSHWADQEYHNSADFFLVTHRDPYDMVCSMGNMFRPVFFTDFKRAISSCRGMADNEKRILRVASKSG--SALHVHHSALYSAESMAQVVEAMA 106
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BLAST of NO14G00490 vs. NCBI_GenBank
Match: EWM24604.1 (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 7.400e-9
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MYKVHTPNQTYHKSADFFLVTHRDPYDMVCPQAKMFAVIFFKDLNQALRSDHTMAQDEKRIFNLAEAAGPENALHMHSSALHSIEGMTEVVEAM 95
            +YK H     +H+ ADF +VT+RDPY+++C   +MF    F+  ++A+     MA++E  I + A   G   +LH++S  L S EGMTEVV  +
Sbjct:  161 VYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREG-TRSLHINSDVLKSAEGMTEVVRLL 253
The following BLAST results are available for this feature:
BLAST of NO14G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM19967.11.100e-2056.84hypothetical protein Naga_102579g1, partial [Nanno... [more]
EWM24604.17.400e-938.30hypothetical protein Naga_100171g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00490.1NO14G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00490.1NO14G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00490 ID=NO14G00490|Name=NO14G00490|organism=Nannochloropsis oceanica|type=gene|length=294bp
ATGTATAAAGTTCACACGCCGAATCAGACTTATCACAAGAGCGCCGATTT
CTTCTTGGTGACCCACCGCGACCCGTATGACATGGTTTGCCCACAAGCCA
AAATGTTTGCTGTGATATTCTTCAAGGATCTCAATCAGGCCTTGCGTTCA
GACCATACCATGGCGCAGGATGAAAAGAGAATCTTCAACCTTGCCGAAGC
TGCGGGGCCTGAGAATGCATTACACATGCATTCTTCTGCGCTCCATTCCA
TCGAGGGTATGACGGAAGTGGTGGAGGCGATGGCAAGGATGTAG
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protein sequence of NO14G00490.1

>NO14G00490.1-protein ID=NO14G00490.1-protein|Name=NO14G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MYKVHTPNQTYHKSADFFLVTHRDPYDMVCPQAKMFAVIFFKDLNQALRS
DHTMAQDEKRIFNLAEAAGPENALHMHSSALHSIEGMTEVVEAMARM*
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Synonyms
Publications