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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:92085..94455 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00260.1 vs.
Match: EWM24772.1 (hypothetical protein Naga_100255g3 [Nannochloropsis gaditana]) HSP 1 Score: 208.0 bits (528), Expect = 8.000e-50 Identity = 124/178 (69.66%), Postives = 134/178 (75.28%), Query Frame = 0
Query: 420 LRAFASPEERRLRAVYRDLWERGLTIGSGSAYGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLVYAICHDLKEEGEMEREEEEDGGRVKGKEEGGREQGGREEE---------------ERGDVGSRAAMTRFGWPRRSRVGGFMIEYMTLRFISVTRRME 583
+ + S EER LRAVYRDLWERGLTIGSG AYGADFTAYEGDP+AFHSFAA IVLPA + LSARALSASVRLEQSVVKLLVYA+CH + EGE EE +G K EGG E GG E E + GDVG+RAA+TRFGWPRRS VGGFMIEYMTLRFISVTRRME
Sbjct: 413 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCH--RREGE---EEHMEGRGEKRTGEGG-ENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC GGCCGTGCAGAGGGCGGTTCCGGTCGCCCTCCTCCCACCGGCCCTAGCCC TTGGCATTGAGGAAGGGCTGCTCTCAATGGCCACCGAGGCACCTCGCGCC GACACAGACTACTTCGACAAGCGCGTCATGGACGAGAAGACAGTGAATGC CATCGAGGAGGAAAGGCGAGAGAGGAAACGGAAACGCTACGAGTACGAAG TCCAGAAAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTA GCAGCAGCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAA TGAAAGCGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAG GGGAAGGGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGC AACCTTCGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGC GCAGCCCCTGCGAGCGTTCGCCTCGCCTGAGGAGAGGAGGTTGAGAGCCG TCTACCGGGATCTGTGGGAGAGAGGGTTAACTATTGGGAGTGGCAGTGCG TACGGCGCCGATTTCACCGCGTATGAAGGCGATCCCTTGGCTTTTCACTC CTTTGCCGCCTTCATCGTCCTACCTGCGGATGCCTCTCTCTCCGCCAGAG CCCTCTCGGCAAGCGTGCGCCTTGAGCAAAGCGTGGTCAAATTACTCGTG TATGCCATTTGTCATGATTTAAAGGAAGAAGGGGAGATGGAAAGGGAGGA AGAAGAGGACGGGGGAAGAGTGAAGGGGAAGGAGGAGGGAGGGAGAGAGC AAGGGGGGAGGGAGGAGGAGGAGAGGGGGGATGTGGGAAGTCGGGCGGCG ATGACGAGGTTTGGTTGGCCGAGAAGAAGTCGAGTGGGTGGATTTATGAT TGAATACATGACACTGAGGTTCATCTCGGTAACGAGAAGGATGGAGTAA back to topprotein sequence of NO14G00260.1 >NO14G00260.1-protein ID=NO14G00260.1-protein|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp METGATTGEGVEDMRGNNAMEGGEGGKGGEVVEGMDGGDVVTPPAAPGDS KNQQHDEEEQQQQQQQRQQQQEKEEEEADGQRLPFDNARGVDPQKGGRAE EQADLSPTPPEVAEEERRPDNKGKEHREEDDAEPPLKKKRAKEFMSWFPS SAHIATMPLPVAPSLLPCPSPSPPPRPPPHASPLSSSHTLPPSSNDGSPP TPLLPPPPPPRPPPPVVEEVADRLPLRTAHLTDDGTALVWDAATALELRG KHRMLSRSLGMGSIRVSAVQRAVPVALLPPALALGIEEGLLSMATEAPRA DTDYFDKRVMDEKTVNAIEEERRERKRKRYEYEVQKALEQQEADTAGAAV AAAESAPFPPSLAPSSNESGDGVLFIAAREGGGGEGERESEGGRSEGGEG NLRSSRPTREATKEEEAQPLRAFASPEERRLRAVYRDLWERGLTIGSGSA YGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLV YAICHDLKEEGEMEREEEEDGGRVKGKEEGGREQGGREEEERGDVGSRAA MTRFGWPRRSRVGGFMIEYMTLRFISVTRRME* back to topmRNA from alignment at chr14:92085..94455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp|location=Sequence derived from alignment at chr14:92085..94455- (Nannochloropsis oceanica) ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA
CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG
GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC
AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC
CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG
GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG
AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC
CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG
TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC
CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC
TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT
ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT
AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG
ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA
AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC
GGCCGTGCAGAGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGGAG
CGATTGAGGGAGGAAGAAAAGGGTGGAAGGAGGGAAGGAGGGGCTCACAT
TAATTCTACACAATTAAAGCATCAGTAACACATATACGCCAAAACATCTT
TCCCTCCCTCCCTCCCTTTCCCTCCCACCCCTCCCTTCCCAAGGCGGTTC
CGGTCGCCCTCCTCCCACCGGCCCTAGCCCTTGGCATTGAGGAAGGGCTG
CTCTCAATGGCCACCGAGGCACCTCGCGCCGACACAGACTACTTCGACAA
GCGCGTCATGGACGAGAAGACAGTGAATGCCATCGAGGAGGAAAGGCGAG
AGAGGAAACGGTAGGTAGGATGAGAGGGAGGAAGGGAGAGTAGTACTTCT
GGCAGGGGAAAGATGGCTCACAGTCTTTCCCTCCCTCCCTCCCTCCATTC
ATCCATCCATCCCTCCCTCGAAAGGAAACGCTACGAGTACGAAGTCCAGA
AAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTAGCAGCA
GCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAATGAAAG
CGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAGGGGAAG
GGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGCAACCTT
CGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGCGCAGCC
GTCCGACACCACCCTCCCTCCCATCCTCCCTCCCTCCCTTCCTCCTCTCC
TCGCCGACGGTCTGCCTATTCCTGACCCCCCCCCGCTCCTGTCCTTGCCT
ACCTCGAAGCCACCGCCGCCAGGCAACAAAGAATTGCCTCCCACTGCCTC
ATCCCTCCCCCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCCC
GCTTGTCCGTCCTTTGACAAGCCTGCGAGCGTTCGCCTCGCCTGAGGAGA
GGAGGTTGAGAGCCGTCTACCGGGATCTGTGGGAGAGAGGGTTAACTATT
GGGAGTGGCAGTGCGTACGGCGCCGATTTCACCGCGTATGAAGGTAGGTT
TAATCTGCCTCCCTCCCTCCCTCCCTAGATGATGGAGGGTACTTCAAGCA
TGTACACACAATGCACCTTCCTTCCCTTCCCACTATCCGATTACCCTCAG
GCGATCCCTTGGCTTTTCACTCCTTTGCCGCCTTCATCGTCCTACCTGCG
GATGCCTCTCTCTCCGCCAGAGCCCTCTCGGCAAGCGTGCGCCTTGAGCA
AAGCGTGGTCAAATTACTCGTGTATGCCATTTGTCATGATTTAAAGGAAG
AAGGGGAGATGGAAAGGGAGGAAGAAGAGGACGGGGGAAGAGTGAAGGGG
AAGGAGGAGGGAGGGAGAGAGCAAGGGGGGAGGGAGGAGGAGGAGAGGGG
GGATGTGGGAAGTCGGGCGGCGATGACGAGGTTTGGTTGGCCGAGAAGAA
GTCGAGTGGGTGGATTTATGATTGAATACATGACACTGAGGTTCATCTCG
GTAACGAGAAGGATGGAGTAA back to topCoding sequence (CDS) from alignment at chr14:92085..94455- >NO14G00260.1 ID=NO14G00260.1|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr14:92085..94455- (Nannochloropsis oceanica) ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC GGCCGTGCAGAGGGCGGTTCCGGTCGCCCTCCTCCCACCGGCCCTAGCCC TTGGCATTGAGGAAGGGCTGCTCTCAATGGCCACCGAGGCACCTCGCGCC GACACAGACTACTTCGACAAGCGCGTCATGGACGAGAAGACAGTGAATGC CATCGAGGAGGAAAGGCGAGAGAGGAAACGGAAACGCTACGAGTACGAAG TCCAGAAAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTA GCAGCAGCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAA TGAAAGCGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAG GGGAAGGGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGC AACCTTCGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGC GCAGCCCCTGCGAGCGTTCGCCTCGCCTGAGGAGAGGAGGTTGAGAGCCG TCTACCGGGATCTGTGGGAGAGAGGGTTAACTATTGGGAGTGGCAGTGCG TACGGCGCCGATTTCACCGCGTATGAAGGCGATCCCTTGGCTTTTCACTC CTTTGCCGCCTTCATCGTCCTACCTGCGGATGCCTCTCTCTCCGCCAGAG CCCTCTCGGCAAGCGTGCGCCTTGAGCAAAGCGTGGTCAAATTACTCGTG TATGCCATTTGTCATGATTTAAAGGAAGAAGGGGAGATGGAAAGGGAGGA AGAAGAGGACGGGGGAAGAGTGAAGGGGAAGGAGGAGGGAGGGAGAGAGC AAGGGGGGAGGGAGGAGGAGGAGAGGGGGGATGTGGGAAGTCGGGCGGCG ATGACGAGGTTTGGTTGGCCGAGAAGAAGTCGAGTGGGTGGATTTATGAT TGAATACATGACACTGAGGTTCATCTCGGTAACGAGAAGGATGGAGTAA back to top
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