NO13G03290.1, NO13G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03290.1
Unique NameNO13G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr13:967009..969883 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:967009..969883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03290NO13G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03290.1NO13G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03290.1.cds1NO13G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03290.1.cds2NO13G03290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03290.1.cds3NO13G03290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03290.1.cds4NO13G03290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03290.1.cds5NO13G03290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03290.1.cds6NO13G03290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03290.1 ID=NO13G03290.1|Name=NO13G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
TCTTAATTATGCCTTGCCGCCTCTATTTTAATCGTGCCTTGCCCTACTGA
AACACAGGCAGGAGACACCATGCCCCATCTCCGTTTACCTCGTTCCCGGC
CCAGCCTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTT
GTCCCCGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGA
GGCCCGTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAA
CCATTGAAGAGGGCATCCCGGAAGGCTACTCATACGGCTACGTTTTGGTG
AGCGATCAATGGCCGCAGGTGACGCAGCTAATATCCAATACCTTTTGGCA
CGGAAAGAGGTTTGTCATTGACACCCCTACAGTAGGCCACATCACCAACG
CCATGGGCAATGGCTTGGTTAATGTCCAGACAATGCCGGGGGATCTCTAC
GTCGGCCATTTGGAAGACATCCGACCAGACTTGAAGGCCCTTCAACTCGA
CCGGAAGCCTAGCTTGATTGTCGATTATGGTAATGGTGGAGGTGATGAAA
TTCGACTCGTGAACAGCAAGAAGAGGATCTACCTCGGCCGTGGCACGGAC
TGGGCCCCCGCTCCCTACGCCAAGATCTTTGGTTATTTCGTGCTGCAGCT
TTTCGACCGGCCTCATGCTATGGAATTCACTGTGATGGGCGTCAGAAACC
GAATGGACTTGAACGAGCGGATCGAAGCGGCAGAGGCCGGGGAGGAGGAA
GGGAGGGAGGAAGCGGGGGACGGGCAGGTCTTCATAGTGATGGAGCCCGT
CAATAAGAAGGCGATTGATCTTACAGTGCATGGCTCTATGCGCGAAGAAA
CAGAAGAGGAAGAGGTGCTTGAGGTCAGTCATTTAAGAGGGGAGCTGATC
CATCAGAGCAAGTCGGAAGAGGGAGAGGGGAAGGGGGGAACGGAGGGAAG
AAATATAAATACAAAATGGAGGGAATTGCCGTGAAATACCAATAACGTAT
GTAAAATTACAAACTAGGAGAAAGAAAAACAAAAATGAAAAGTCATTCCG
TACGGCAGGAAGCAGCATCGGAAGGCAGCATCGGAAGGGGGTATGAATGT
CTCGCCGTAAGCGACCCGGATGGCTGACTTGCTGTGTGTGGGTGCTTGTC
CCTCTCCTCAACAGGGGTTACGGAACAGGCTTCATCATCGCTTTTGTACA
CCTCCTCGTCCTGGTTCCCTCCCTGTGCCTTTTGTATCGATTTCTGGTAT
CAAAATATTTATTTCCCCGTTACTGAAGCGAGGAGCTTGAAGCGCGGCGC
ATCGCTTGCTTGAGCGGCGGAAACAAGGACAAGTAAGATCCAGCTTCTCC
TCCTGCGAACCTATACACCTCATAGCTATAGTTCTATAGTTATATAGTTC
TTTACTGTACCAAAAACGCGCGGTCTGAGAATGATCGTTCTGTTCCTGTG
GGCTTTGCTATATTGCTGTCGGCCTTGGAGAGATCAGTTGGGTGGTGGTG
TTCTCCTGCGTCGGGATCGTGGGATTGAAAGCAGCTGCACGTTTATGTCT
AAACGCGCGCACACGCAGCACACATGCAAGCACACACATAAACTCACACA
CGCTCTCACACACACTTAACATCCGACTCTCCTCTCCGCGCGGAGCAAAT
CTGCCAAGTCTGGGGGCAGCGAAGGCTACCTTGCTTAGCGAAGAAGAGCG
GTCGACTCCATCTGACGGTGCTCACCATCCCCCTCTCATTATCACGCCCA
TCGACACAGCGAATATAGAACATACAGGC
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protein sequence of NO13G03290.1

>NO13G03290.1-protein ID=NO13G03290.1-protein|Name=NO13G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPHLRLPRSRPSLNGFLSSFCITLLTFVPAAQVAAVNVLRTRAEARSLSW
QQLEDVFRQGTIEEGIPEGYSYGYVLVSDQWPQVTQLISNTFWHGKRFVI
DTPTVGHITNAMGNGLVNVQTMPGDLYVGHLEDIRPDLKALQLDRKPSLI
VDYGNGGGDEIRLVNSKKRIYLGRGTDWAPAPYAKIFGYFVLQLFDRPHA
MEFTVMGVRNRMDLNERIEAAEAGEEEGREEAGDGQVFIVMEPVNKKAID
LTVHGSMREETEEEEVLEVSHLRGELIHQSKSEEGEGKGGTEGRNINTKW
RELP*
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mRNA from alignment at chr13:967009..969883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03290.1 ID=NO13G03290.1|Name=NO13G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at chr13:967009..969883+ (Nannochloropsis oceanica)
TCTTAATTATGCCTTGCCGCCTCTATTTTAATCGTGCCTTGCCCTACTGA
AACACAGGCAGGAGACACCATGCCCCATCTCCGTTTACCTCGTTCCCGGC
CCAGCCTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTT
GTCCCCGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGA
GGCCCGTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAA
CCATTGAAGAGGGTGAGTGAGGAGGGGACGAGAGAGGGAGGAAGGAATGT
CACAGAGGTTAGCACAAGACATGTCTTTCCTCGTCAGATTATGAATATTT
ACAGAGTAACATGCTTGAAGCCACACAAAACCACTGTCCCTCGCTCATCT
CCCCGCCCTCTCTCCCACCCTCCCTCCCTGTCTCTCCCAGGCATCCCGGA
AGGCTACTCATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAGGTGA
CGCAGCTAATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCATTGAC
ACCCCTACAGTAGGTAAAGAGGGAGGTAGGAAGGGGGGAGGGAGGAGGGT
GGGATTCATGGGCGAAGCATACCGCGGGGGTATGGCAAGCACTGCACCGC
CTCTTAAGTCATCCCTCTTGATGCTTTATAGCCCAGACAAAGGACGTGAG
CGCACGTCTTTCTTAATAAGCCTCTCATCTCTTCCTTTCTAATTCCCATC
CTCCTTTCCAGGCCACATCACCAACGCCATGGGCAATGGCTTGGTTAATG
TCCAGACAATGCCGGGGGATCTCTACGTCGGCCATTTGGAAGACATCCGA
CCAGACTTGAAGGGTAGGAGAGAGGGAGGGAAGGAGGATTGGATGGAGGG
AGAGGAGGAGAAAGACAGTTGTCGATGACCCTACTATTGGACCAGTTACT
TACTTACCAACCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTCCTCCCT
CCCTCTCTCATTGGCTTGATTGGAACGATCAGCCATATGGCTGGTCAAGT
CAATCGCAGGGTTGACGAAATCTGTCCTGTTAATCACGAGCACGACACCC
ACCTGATCCTCCCTTCCTTTCCTCCTTCCCTCCTTCCCTCCCTCCCTCCT
TCCTTCCTTCCAGCCCTTCAACTCGACCGGAAGCCTAGCTTGATTGTCGA
TTATGGTAATGGTGGAGGTGATGAAATTCGACTCGTGAACAGCAAGAAGA
GGATCTACCTCGGCCGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGAAGTGGGGGACAGGAGAAGTGAGAGGGAAGGAAAACGAGG
TTGACGTGTGATTCGTTGGTTTACGTAGAGTCAATCCTCACGAGAGCGCA
TATTCAATCAGCCACCCTTGGCCAAACTACACGCAACCACACCCTTCCTT
CCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCAGTGGCACG
GACTGGGCCCCCGCTCCCTACGCCAAGATCTTTGGTTATTTCGTGCTGCA
GCTTTTCGACCGGCCTCATGCTATGGAATTCACTGTGATGGGTGAGGAGG
GTGGAGAGGGCGGAAGGGAGGGAGGGCGGGAAGGCGCCTTATAGGTCAGA
CCTCAACAACTTTTTCCCCATTGGTTTTTTGTTTTCTTTAAAAACGTGCT
GCTGTACCCAGCGCGCATTCCCCCCTTCCTCCTTCCCACAGTATCACTTC
ATTTATTCTCCTCCTCACTTTCATTCTGTCGCAGGCGTCAGAAACCGAAT
GGACTTGAACGAGCGGATCGAAGCGGCAGAGGCCGGGGAGGAGGAAGGGA
GGGAGGAAGCGGGGGACGGGCAGGTCTTCATAGTGATGGAGCCCGTCAAT
AAGAAGGCGATTGATCTTACAGTGCATGGCTCTATGCGCGAAGAAACAGA
AGAGGAAGAGGTGCTTGAGGTCAGTCATTTAAGAGGGGAGCTGATCCATC
AGAGCAAGTCGGAAGAGGGAGAGGGGAAGGGGGGAACGGAGGGAAGAAAT
ATAAATACAAAATGGAGGGAATTGCCGTGAAATACCAATAACGTATGTAA
AATTACAAACTAGGAGAAAGAAAAACAAAAATGAAAAGTCATTCCGTACG
GCAGGAAGCAGCATCGGAAGGCAGCATCGGAAGGGGGTATGAATGTCTCG
CCGTAAGCGACCCGGATGGCTGACTTGCTGTGTGTGGGTGCTTGTCCCTC
TCCTCAACAGGGGTTACGGAACAGGCTTCATCATCGCTTTTGTACACCTC
CTCGTCCTGGTTCCCTCCCTGTGCCTTTTGTATCGATTTCTGGTATCAAA
ATATTTATTTCCCCGTTACTGAAGCGAGGAGCTTGAAGCGCGGCGCATCG
CTTGCTTGAGCGGCGGAAACAAGGACAAGTAAGATCCAGCTTCTCCTCCT
GCGAACCTATACACCTCATAGCTATAGTTCTATAGTTATATAGTTCTTTA
CTGTACCAAAAACGCGCGGTCTGAGAATGATCGTTCTGTTCCTGTGGGCT
TTGCTATATTGCTGTCGGCCTTGGAGAGATCAGTTGGGTGGTGGTGTTCT
CCTGCGTCGGGATCGTGGGATTGAAAGCAGCTGCACGTTTATGTCTAAAC
GCGCGCACACGCAGCACACATGCAAGCACACACATAAACTCACACACGCT
CTCACACACACTTAACATCCGACTCTCCTCTCCGCGCGGAGCAAATCTGC
CAAGTCTGGGGGCAGCGAAGGCTACCTTGCTTAGCGAAGAAGAGCGGTCG
ACTCCATCTGACGGTGCTCACCATCCCCCTCTCATTATCACGCCCATCGA
CACAGCGAATATAGAACATACAGGC
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Coding sequence (CDS) from alignment at chr13:967009..969883+

>NO13G03290.1 ID=NO13G03290.1|Name=NO13G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr13:967009..969883+ (Nannochloropsis oceanica)
ATGCCCCATCTCCGTTTACCTCGTTCCCGGCCCAGCCTCAACGGCTTCCT
CTCTTCTTTCTGTATAACCTTGTTGACATTTGTCCCCGCAGCACAAGTTG
CAGCCGTCAATGTCCTTCGAACGAGGGCAGAGGCCCGTAGTCTTTCCTGG
CAGCAACTGGAGGACGTATTTCGACAGGGAACCATTGAAGAGGGCATCCC
GGAAGGCTACTCATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAGG
TGACGCAGCTAATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCATT
GACACCCCTACAGTAGGCCACATCACCAACGCCATGGGCAATGGCTTGGT
TAATGTCCAGACAATGCCGGGGGATCTCTACGTCGGCCATTTGGAAGACA
TCCGACCAGACTTGAAGGCCCTTCAACTCGACCGGAAGCCTAGCTTGATT
GTCGATTATGGTAATGGTGGAGGTGATGAAATTCGACTCGTGAACAGCAA
GAAGAGGATCTACCTCGGCCGTGGCACGGACTGGGCCCCCGCTCCCTACG
CCAAGATCTTTGGTTATTTCGTGCTGCAGCTTTTCGACCGGCCTCATGCT
ATGGAATTCACTGTGATGGGCGTCAGAAACCGAATGGACTTGAACGAGCG
GATCGAAGCGGCAGAGGCCGGGGAGGAGGAAGGGAGGGAGGAAGCGGGGG
ACGGGCAGGTCTTCATAGTGATGGAGCCCGTCAATAAGAAGGCGATTGAT
CTTACAGTGCATGGCTCTATGCGCGAAGAAACAGAAGAGGAAGAGGTGCT
TGAGGTCAGTCATTTAAGAGGGGAGCTGATCCATCAGAGCAAGTCGGAAG
AGGGAGAGGGGAAGGGGGGAACGGAGGGAAGAAATATAAATACAAAATGG
AGGGAATTGCCGTGA
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Synonyms
Publications