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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:621980..623809 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02240.1 vs.
Match: EWM21880.1 (u3 small nucleolar rna-associated protein 18 [Nannochloropsis gaditana]) HSP 1 Score: 734.6 bits (1895), Expect = 2.600e-208 Identity = 406/624 (65.06%), Postives = 470/624 (75.32%), Query Frame = 0
Query: 7 SGRRGNGEGGAKAESRRQEMNEGDAAVPAQDEEDTSPLFYLDREESVEVEGF----EQEEEGNVVPKQL---------KRQKKQGEMQRRRQGKITEADKDEEECMLERLVFGARDTAVLFNDQEAAFQDDRC----LGCRAVAKF-----ARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRG-DTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYD 608
SG R + GGA + D+ P ++D +PLFY+DREE+ V E ++E V P++ KRQ+KQ E QRRR+ EA+KD+EE LERLVFGARDT L ++ D LG + R PAW+D+DDE + V++A KDRLRKLRR PDE+DISGADYQERLRARF + + ALDWA LP TP D +G RGR RRR EW G +TSEEE + EGD DDFGGLFRS+APLV+G+G +LQP TLEV RCRDAN+QEPS+A+VQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRN+KVAGVFF DLPI +A+FVD F +VVVSGRRPFFYW+D +G + RV RL+GREEKSLERFVASPDGQWLAFTGKDGY++LVGA+SKQWAGEFKMNGTAR+++FSADG+HL+ASGGDAVVYRWDLRS RCLARFHNEGGTVTSALAAS AGM AVGAESGVVNLYE+ VLG + H++ AL P KALTHL T VD+LAFNHDG LLAMASKW+RDALRVVHVPSRTV++NWPTGQTP+RYPSALAFSPNSGMLAVGNDRGRVLLYRL+HY+
Sbjct: 3 SGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEMVGTLDVDNELDQEAGVGPEEANIIAQAGPSKRQRKQNEQQRRRKVD-DEAEKDDEERTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTPGD-RGDGRRGR-RRRGREWGGAETSEEEEEEVVEGD-----DDFGGLFRSSAPLVVGSG-TSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS-AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02240.1 ID=NO13G02240.1|Name=NO13G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
ATGCCAGGCGCCCACAGGTCCGGCCGGCGTGGCAATGGAGAGGGAGGTGC
CAAGGCAGAGAGTCGGCGGCAGGAGATGAACGAAGGTGATGCTGCCGTGC
CTGCTCAAGATGAGGAGGACACATCGCCCTTGTTCTATCTGGACCGGGAA
GAGTCGGTGGAAGTGGAAGGGTTCGAGCAAGAGGAGGAGGGCAACGTCGT
ACCCAAGCAGCTCAAGCGCCAGAAGAAGCAAGGAGAGATGCAACGGCGGC
GGCAGGGAAAGATTACTGAGGCCGACAAGGACGAGGAAGAATGCATGCTG
GAACGTTTGGTATTTGGCGCACGGGATACGGCTGTGCTCTTTAACGATCA
AGAAGCTGCTTTCCAAGACGACAGATGCCTGGGTTGTCGTGCAGTAGCGA
AGTTTGCACGGGCGCCTGCCTGGCAAGACGATGACGACGAGGCGGTGCGT
GTGAACATTGCGAGCAAGGACCGACTGCGGAAGTTGCGTCGGCAGCCCGA
CGAGAAGGATATCAGTGGGGCAGACTACCAGGAGCGGCTGCGGGCGCGCT
TCCAAGAAAGCAGTAAGATGGCGCTGGACTGGGCGACCTTGCCTCGGACG
CCTGCGGACGACGCAGCAGAAGGGAATAGAGGGAGGCATCGTCGTCGGCA
AGGAGAGTGGAGAGGAGATACAAGTGAGGAAGAAGGAGATAACGGGGAGG
AAGGAGACAAGCAGGAGTATGATGATGATTTTGGTGGTTTGTTTCGAAGC
ACCGCGCCCTTGGTGCTGGGTGCTGGTGGGAATGGCGGTAACGAAAAACT
GCAGCCGGAGACCTTGGAGGTGGTACGTTGCAGGGACGCCAACATGCAAG
AACCCTCCAAGGCCATGGTTCAAGCGGTACAATTTCATCCCTCGACGGGC
GGATTGTTGTTTACGGCGGGCTTGGACAAGACACTGCGATTTTTTCAGGT
GGATGGGAAGAGGAACGAAAAGGTGGCTGGGGTGTTTTTCCCTGACCTGC
CCATCCTGTCGGCTTCTTTCGTGGATCCGTCGAGGGCTGGTGAATTTGAA
CAGGTGGTGGTGAGTGGGAGAAGGCCTTTTTTTTATTGGTATGACACCGT
TTCGGGAACGGCTGTGAGGGTTCATCGATTGATAGGACGAGAAGAAAAGA
GCTTGGAGAGGTTCGTGGCTTCTCCGGATGGGCAGTGGCTGGCATTCACG
GGTAAGGACGGGTATATCATATTGGTGGGCGCAAAGAGCAAGCAGTGGGC
TGGGGAGTTCAAGATGAATGGGACGGCGCGATCTATGTCGTTCAGTGCGG
ATGGCCAGCATCTGCTCGCCTCGGGGGGCGACGCCGTTGTGTACCGATGG
GATTTGCGCTCGACCCGATGCCTCGCTCGGTTCCACAACGAGGGAGGAAC
GGTTACTTCAGCCTTGGCTGCTTCGTTGGCGGGTATGACAGCCGTGGGGG
CCGAAAGTGGAGTGGTGAATCTATACGAGGACTCCGACGTGTTGGGAAGG
GTGGAGAGGGAGGGAGGGCTGGCATTGGCGCGACATGCCTCAACTGCCTT
GCCACCCACCAAGGCGCTGACCCACTTGACGACCACGGTAGACTCGCTGG
CTTTCAATCATGACGGGCAGCTGTTGGCGATGGCGTCGAAGTGGGATCGG
GACGCCCTGCGGGTGGTGCACGTGCCCTCTCGCACGGTGTATGCGAACTG
GCCGACGGGGCAGACGCCTGTAAGGTATCCGTCTGCACTGGCTTTCAGTC
CGAATAGTGGGATGCTCGCAGTGGGGAATGATAGGGGGCGGGTGTTACTG
TATCGGTTGAAACATTACGATAGAGCGTGA back to topprotein sequence of NO13G02240.1 >NO13G02240.1-protein ID=NO13G02240.1-protein|Name=NO13G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MPGAHRSGRRGNGEGGAKAESRRQEMNEGDAAVPAQDEEDTSPLFYLDRE
ESVEVEGFEQEEEGNVVPKQLKRQKKQGEMQRRRQGKITEADKDEEECML
ERLVFGARDTAVLFNDQEAAFQDDRCLGCRAVAKFARAPAWQDDDDEAVR
VNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRT
PADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRS
TAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTG
GLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFE
QVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFT
GKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRW
DLRSTRCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGR
VEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDR
DALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLL
YRLKHYDRA* back to topmRNA from alignment at chr13:621980..623809- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02240.1 ID=NO13G02240.1|Name=NO13G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at chr13:621980..623809- (Nannochloropsis oceanica)
ATGCCAGGCGCCCACAGGTCCGGCCGGCGTGGCAATGGAGAGGGAGGTGC
CAAGGCAGAGAGTCGGCGGCAGGAGATGAACGAAGGTGATGCTGCCGTGC
CTGCTCAAGATGAGGAGGACACATCGCCCTTGTTCTATCTGGACCGGGAA
GAGTCGGTGGAAGTGGAAGGGTTCGAGCAAGAGGAGGAGGGCAACGTCGT
ACCCAAGCAGCTCAAGCGCCAGAAGAAGCAAGGAGAGATGCAACGGCGGC
GGCAGGGAAAGATTACTGAGGCCGACAAGGACGAGGAAGAATGCATGCTG
GAACGTTTGGTATTTGGCGCACGGGATACGGCTGTGCTCTTTAACGATCA
AGAAGCTGCTTTCCAAGACGACAGATGCCTGGGTTGTCGTGCAGTAGCGA
AGTTTGCACGGGCGCCTGCCTGGCAAGACGATGACGACGAGGCGGTGCGT
GTGAACATTGCGAGCAAGGACCGACTGCGGAAGTTGCGTCGGCAGCCCGA
CGAGAAGGATATCAGTGGGGCAGACTACCAGGAGCGGCTGCGGGCGCGCT
TCCAAGAAAGCAGTAAGATGGCGCTGGACTGGGCGACCTTGCCTCGGACG
CCTGCGGACGACGCAGCAGAAGGGAATAGAGGGAGGCATCGTCGTCGGCA
AGGAGAGTGGAGAGGAGATACAAGTGAGGAAGAAGGAGATAACGGGGAGG
AAGGAGACAAGCAGGAGTATGATGATGATTTTGGTGGTTTGTTTCGAAGC
ACCGCGCCCTTGGTGCTGGGTGCTGGTGGGAATGGCGGTAACGAAAAACT
GCAGCCGGAGACCTTGGAGGTGGTACGTTGCAGGGACGCCAACATGCAAG
AACCCTCCAAGGCCATGGTTCAAGCGGTACAATTTCATCCCTCGACGGGC
GGATTGTTGTTTACGGCGGGCTTGGACAAGACACTGCGATTTTTTCAGGT
GGATGGGAAGAGGAACGAAAAGGTGGCTGGGGTGTTTTTCCCTGACCTGC
CCATCCTGTCGGCTTCTTTCGTGGATCCGTCGAGGGCTGGTGAATTTGAA
CAGGTGGTGGTGAGTGGGAGAAGGCCTTTTTTTTATTGGTATGACACCGT
TTCGGGAACGGCTGTGAGGGTTCATCGATTGATAGGACGAGAAGAAAAGA
GCTTGGAGAGGTTCGTGGCTTCTCCGGATGGGCAGTGGCTGGCATTCACG
GGTAAGGACGGGTATATCATATTGGTGGGCGCAAAGAGCAAGCAGTGGGC
TGGGGAGTTCAAGATGAATGGGACGGCGCGATCTATGTCGTTCAGTGCGG
ATGGCCAGCATCTGCTCGCCTCGGGGGGCGACGCCGTTGTGTACCGATGG
GATTTGCGCTCGACCCGATGCCTCGCTCGGTTCCACAACGAGGGAGGAAC
GGTTACTTCAGCCTTGGCTGCTTCGTTGGCGGGTATGACAGCCGTGGGGG
CCGAAAGTGGAGTGGTGAATCTATACGAGGACTCCGACGTGTTGGGAAGG
GTGGAGAGGGAGGGAGGGCTGGCATTGGCGCGACATGCCTCAACTGCCTT
GCCACCCACCAAGGCGCTGACCCACTTGACGACCACGGTAGACTCGCTGG
CTTTCAATCATGACGGGCAGCTGTTGGCGATGGCGTCGAAGTGGGATCGG
GACGCCCTGCGGGTGGTGCACGTGCCCTCTCGCACGGTGTATGCGAACTG
GCCGACGGGGCAGACGCCTGTAAGGTATCCGTCTGCACTGGCTTTCAGTC
CGAATAGTGGGATGCTCGCAGTGGGGAATGATAGGGGGCGGGTGTTACTG
TATCGGTTGAAACATTACGATAGAGCGTGA back to topCoding sequence (CDS) from alignment at chr13:621980..623809- >NO13G02240.1 ID=NO13G02240.1|Name=NO13G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at chr13:621980..623809- (Nannochloropsis oceanica)
ATGCCAGGCGCCCACAGGTCCGGCCGGCGTGGCAATGGAGAGGGAGGTGC
CAAGGCAGAGAGTCGGCGGCAGGAGATGAACGAAGGTGATGCTGCCGTGC
CTGCTCAAGATGAGGAGGACACATCGCCCTTGTTCTATCTGGACCGGGAA
GAGTCGGTGGAAGTGGAAGGGTTCGAGCAAGAGGAGGAGGGCAACGTCGT
ACCCAAGCAGCTCAAGCGCCAGAAGAAGCAAGGAGAGATGCAACGGCGGC
GGCAGGGAAAGATTACTGAGGCCGACAAGGACGAGGAAGAATGCATGCTG
GAACGTTTGGTATTTGGCGCACGGGATACGGCTGTGCTCTTTAACGATCA
AGAAGCTGCTTTCCAAGACGACAGATGCCTGGGTTGTCGTGCAGTAGCGA
AGTTTGCACGGGCGCCTGCCTGGCAAGACGATGACGACGAGGCGGTGCGT
GTGAACATTGCGAGCAAGGACCGACTGCGGAAGTTGCGTCGGCAGCCCGA
CGAGAAGGATATCAGTGGGGCAGACTACCAGGAGCGGCTGCGGGCGCGCT
TCCAAGAAAGCAGTAAGATGGCGCTGGACTGGGCGACCTTGCCTCGGACG
CCTGCGGACGACGCAGCAGAAGGGAATAGAGGGAGGCATCGTCGTCGGCA
AGGAGAGTGGAGAGGAGATACAAGTGAGGAAGAAGGAGATAACGGGGAGG
AAGGAGACAAGCAGGAGTATGATGATGATTTTGGTGGTTTGTTTCGAAGC
ACCGCGCCCTTGGTGCTGGGTGCTGGTGGGAATGGCGGTAACGAAAAACT
GCAGCCGGAGACCTTGGAGGTGGTACGTTGCAGGGACGCCAACATGCAAG
AACCCTCCAAGGCCATGGTTCAAGCGGTACAATTTCATCCCTCGACGGGC
GGATTGTTGTTTACGGCGGGCTTGGACAAGACACTGCGATTTTTTCAGGT
GGATGGGAAGAGGAACGAAAAGGTGGCTGGGGTGTTTTTCCCTGACCTGC
CCATCCTGTCGGCTTCTTTCGTGGATCCGTCGAGGGCTGGTGAATTTGAA
CAGGTGGTGGTGAGTGGGAGAAGGCCTTTTTTTTATTGGTATGACACCGT
TTCGGGAACGGCTGTGAGGGTTCATCGATTGATAGGACGAGAAGAAAAGA
GCTTGGAGAGGTTCGTGGCTTCTCCGGATGGGCAGTGGCTGGCATTCACG
GGTAAGGACGGGTATATCATATTGGTGGGCGCAAAGAGCAAGCAGTGGGC
TGGGGAGTTCAAGATGAATGGGACGGCGCGATCTATGTCGTTCAGTGCGG
ATGGCCAGCATCTGCTCGCCTCGGGGGGCGACGCCGTTGTGTACCGATGG
GATTTGCGCTCGACCCGATGCCTCGCTCGGTTCCACAACGAGGGAGGAAC
GGTTACTTCAGCCTTGGCTGCTTCGTTGGCGGGTATGACAGCCGTGGGGG
CCGAAAGTGGAGTGGTGAATCTATACGAGGACTCCGACGTGTTGGGAAGG
GTGGAGAGGGAGGGAGGGCTGGCATTGGCGCGACATGCCTCAACTGCCTT
GCCACCCACCAAGGCGCTGACCCACTTGACGACCACGGTAGACTCGCTGG
CTTTCAATCATGACGGGCAGCTGTTGGCGATGGCGTCGAAGTGGGATCGG
GACGCCCTGCGGGTGGTGCACGTGCCCTCTCGCACGGTGTATGCGAACTG
GCCGACGGGGCAGACGCCTGTAAGGTATCCGTCTGCACTGGCTTTCAGTC
CGAATAGTGGGATGCTCGCAGTGGGGAATGATAGGGGGCGGGTGTTACTG
TATCGGTTGAAACATTACGATAGAGCGTGA back to top
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