NO13G02240, NO13G02240 (gene) Nannochloropsis oceanica

Overview
NameNO13G02240
Unique NameNO13G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1830
Alignment locationchr13:621980..623809 -

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Properties
Property NameValue
DescriptionU3 small nucleolar rna-associated protein 18
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:621980..623809 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO13G02240 vs. NCBI_GenBank
Match: EWM21880.1 (u3 small nucleolar rna-associated protein 18 [Nannochloropsis gaditana])

HSP 1 Score: 655.6 bits (1690), Expect = 1.500e-184
Identity = 369/623 (59.23%), Postives = 431/623 (69.18%), Query Frame = 0
Query:    7 SGRRGNGEGGAKAESRRQEMNEGDAAVPAQDEEDTSPLFYLDREE-----SVEVEGFEQEEEGNVVPKQLKRQKKQG--------EMQRRRQGKITEADKDEEECMLERLVFGARDTAVLFNDQEAAFQDDRC----LGCRAVAKF-----ARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYD 608
            SG R +  GGA      +     D+  P   ++D +PLFY+DREE     +++V+  E ++E  V P++     + G                             LERLVFGARDT  L   ++     D      LG     +       R PAW+D+DDE + V++A KDRLRKLRR PDE+DISGADYQERLRARF +  + ALDWA LP TP      G+RG  R                                  RS+APLV+G+ G     +LQP TLEV RCRDAN+QEPS+A+VQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRN+KVAGVFF DLPI +A+FVD      F +VVVSGRRPFFYW+D  +G + RV RL+GREEKSLERFVASPDGQWLAFTGKDGY++LVGA+SKQWAGEFKMNGTAR+++FSADG+HL+ASGGDAVVYRWDLRS RCLARFHNEGGTVTSALAAS AGM AVGAESGVVNLYE+  VLG          + H++ AL P KALTHL T VD+LAFNHDG LLAMASKW+RDALRVVHVPSRTV++NWPTGQTP+RYPSALAFSPNSGMLAVGNDRGRVLLYRL+HY+
Sbjct:    3 SGARRSSRGGAGKPPPGEGERVPDSQPPDAPDKDAAPLFYVDREENEMVGTLDVDN-ELDQEAGVGPEEANIIAQAGPSXXXXXXXXXXXXXXXXXXXXXXXXXXTLERLVFGARDTEALLQGEDGLTPQDTVWEGGLGNNHEDEVEGSGSTRTPAWKDEDDETLWVDVARKDRLRKLRRHPDERDISGADYQERLRARFAKGHEAALDWARLPTTP------GDRGDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSAPLVVGS-GTSTRRRLQPGTLEVARCRDANLQEPSQAVVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNDKVAGVFFQDLPIQAAAFVDGGGDKSFREVVVSGRRPFFYWHDLEAGASSRVPRLMGREEKSLERFVASPDGQWLAFTGKDGYVVLVGARSKQWAGEFKMNGTARALAFSADGRHLMASGGDAVVYRWDLRSRRCLARFHNEGGTVTSALAAS-AGMLAVGAESGVVNLYEEEAVLGGAAGPEHGPTSWHSTAALAPCKALTHLMTAVDTLAFNHDGMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHYE 616          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: XP_002185694.1 (anthranilate synthase. anthranilate synthetase. chorismate lyase, partial [Phaeodactylum tricornutum CCAP 1055/1] >ACI65164.1 anthranilate synthase. anthranilate synthetase. chorismate lyase, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 368.2 bits (944), Expect = 4.800e-98
Identity = 208/476 (43.70%), Postives = 300/476 (63.03%), Query Frame = 0
Query:  139 PAWQDDDDEAVRVNIASKDRLRKLRRQPDE---KDISGADYQERLRARFQESSKMA--LDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGG---LLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHY 607
            PAW D+DD  + VN+ +  RLRKLR+   E     + G D +ERLR R+Q +++     DWA L    +D +                    ++ G+N E+      D DF  L  ST+ L+     +    +L P TL +VRC DAN  +P+++++QAV FHP++     LL TAGLDKTLRFFQV   ++EKV G+ FP LPI SASF+     G    VVVSGRR FFY YDTV+G    + +++GREE+SLE+   SPDG+ +AF G DGYIIL  A +KQW  + K++G+ R+++F+ DG+++LASG D  +YRWDLR+ RC+ RF N+ GT+TS LAAS   + AVGAESGVVN++ +  +       G  A+     +   P K++ +L T+ D + FN DGQ+LA +S+ ++++++++HVPS TV++NWPT +TP+ +  ++ FSP S  LAVGND+G+ LLYRL HY
Sbjct:    5 PAWVDEDDVGLEVNLLATSRLRKLRKSKAEVAALALCGTDLEERLRQRYQRTTQATARTDWARL----SDSSTL----------------IDKDAGNNDEDS-----DSDFKSL--STSLLL----HSTSTRRLPPNTLNLVRCPDANQSDPNQSVLQAVHFHPASDADQPLLLTAGLDKTLRFFQVGVDKSEKVHGIHFPKLPIYSASFL-----GSSGNVVVSGRRSFFYIYDTVAGKLELIPKILGREERSLEKCFPSPDGRTIAFVGNDGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFTNQDGTITSYLAASSRHL-AVGAESGVVNMFSEHSM-------GYRAVGHVVVSERNPMKSILNLHTSADMVRFNGDGQILAFSSRREKNSMKLLHVPSATVFSNWPTSKTPLGFVWSMDFSPESKYLAVGNDKGKCLLYRLMHY 436          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: PNX71852.1 (U3 small nucleolar RNA-associated protein 18 [Trifolium pratense])

HSP 1 Score: 363.6 bits (932), Expect = 1.200e-96
Identity = 211/526 (40.11%), Postives = 302/526 (57.41%), Query Frame = 0
Query:   90 EADKDEEECMLERLVFGAR--DTAVLFNDQEAAFQDDRCLGCRAVAKFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEE---GDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAGM-TAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            + D DE +     L F  R  DT +   +++A F D    G        R P W D+++E V VNIAS +RLRKLR++ DEK ISG++Y  RLRA+  + ++   DWA L                    G   GD+S++E    +N     +   D+D   + R+   LV+ +     + KL P  +E  +  DAN+Q+PS +++ +VQFH   G LL   GLD+ LRFFQ+DGKRN K+  +F  D PI  ASF+      +  QV++SGRR FFY  D V  +  ++  L+GR+EKSLE F  SPD Q +AF G +G+I+LV  KSKQ  G  KMNG+ RS++F+ DGQ LL++GGD  VY WD+R+  C+ +  +EG    +AL  S  G   A G+ SG+VN+Y   + LG   +               P K + +LTTTVD + FNHD Q+LA+ S   + +L+++H+PS TV++NWP   T ++YP  + FSP  G +AVGN  G+VLLY+L+HYD A
Sbjct:   78 KGDDDEVDAEASDLFFTDRSADTVLTGYEEDADFLD----GSSDDDALQRKPVWVDEEEEKVTVNIASVNRLRKLRKEEDEKLISGSEYVARLRAQHVKLNR-GTDWAQLD------------------SGSKMGDSSDDELTDDENKAVVSRGYEDEDMSDILRTNEDLVVKS-----SSKLLPGHIEYSKLVDANIQDPSNSVINSVQFH-QNGQLLLAGGLDRKLRFFQIDGKRNTKLESIFLEDCPIRKASFLP-----DGSQVIISGRRKFFYSLDLVKASVDKIGPLLGRDEKSLEVFEVSPDSQMIAFVGNEGHILLVSTKSKQLVGTLKMNGSVRSLAFTQDGQRLLSAGGDGHVYHWDMRTRTCMHKAVDEGCLNGTALCTSPVGTHFAAGSSSGIVNIYNSDEFLGGKRK---------------PIKTIDNLTTTVDFMKFNHDSQILAICSSMKKRSLKLIHIPSYTVFSNWPHPNTSLQYPRCIDFSPRGGFMAVGNSSGKVLLYKLRHYDHA 554          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: CBJ32524.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 354.4 bits (908), Expect = 7.200e-94
Identity = 189/353 (53.54%), Postives = 240/353 (67.99%), Query Frame = 0
Query:  265 EKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLI--GREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALA------ASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            E   P     +RC+DAN  +P+KA V+AV FHP TG LL   G DKTLR FQVDG RN KV  +FF DLPI SA+F         EQ +V+GRR FFY YD V+G  +++ R+   GR EK LE F ASPDGQWLAF G  GY++L+ +K+KQWA +FK+N TA +++FS D +++LASG DA VY++D+RS RC+ RF NEGGT TS+LA      +S   +TAVG++SGVVN+Y D+D L     E G  + R +     P KA+  LTT V +  F+ DGQ+LA+AS   RDAL+VVH  S T + NWPT +TPVRYP AL FSP  G LAVGNDRG VLLYR++HY +A
Sbjct:   11 ETNSPSGHVALRCKDANQHDPAKATVRAVSFHP-TGELLLAGGFDKTLRLFQVDGVRNAKVHSIFFEDLPITSAAFTGA------EQAIVTGRRSFFYSYDVVTGKVLKIPRVFSSGRTEKHLETFAASPDGQWLAFIGSGGYVLLLSSKTKQWAADFKLNSTATAVTFSPDSRYVLASGADADVYKFDIRSRRCVLRFFNEGGTCTSSLASKGPTSSSPQRLTAVGSDSGVVNVY-DADAL-----ETGKRVLRPS-----PLKAVMSLTTPVTTTKFSPDGQMLAIASNQQRDALKVVHSASCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPQA 345          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: XP_004485620.1 (PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Cicer arietinum])

HSP 1 Score: 352.4 bits (903), Expect = 2.700e-93
Identity = 223/596 (37.42%), Postives = 322/596 (54.03%), Query Frame = 0
Query:   39 EDTSPLFYLDREESVEVEGFEQEEEGNVVPKQLKRQKKQGEMQRRRQGKITEADKDEE---ECMLERLVFG------------ARDTAVLFNDQEA-----AFQDDRCL---GCRAVAKFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEE-GDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAGM-TAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            ++  P     RE+ V+ +  E  +EG+V   ++K++K+ G+ ++    ++ E  + E      +   L FG            A+ + + F D+ A      +Q+D       C       R P W D+++E V VNIA  +RLRKLR++ DE  ISG++Y  RLRA+  + ++   DWA L                    G    D+S++E  D+  +       +D   + R+   LV+ +     + KL P  +E  R  DAN+Q+PS   + +VQFH   G LL   GLDK LRFFQ+DGKRN K+  +F  D PI  ASF+      +  QV++SGRR FFY  D V     ++  L+GREEKSLE F  SPD Q +AF G +GYI+LV  KSKQ  G  KMNGT RS++F+ DGQ LL++GGD  VY WDLR+  C+ +  +EG   ++AL  S  G   A G++SGVVN+Y   + LG   +               P K + +LT  VD + FNHD Q+LA+ S   + +L+++HVPS TV++NWP   T + YP  + FSP  G +AVGN  G+VLLY+L HY  A
Sbjct:    6 QNARPKIETKREDDVQEKEVEDGKEGDVDTLEVKKRKRDGKGEQLATEQVKEMKRLENFLFGSLYSPLEFGKGDNNEVEAETDAKASDLFFTDRSADSVISVYQEDADFSDGSCDDDDALKRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYVSRLRAQHVKLNR-GTDWAQLD------------------SGSKIDDSSDDELTDDENKAVVSRGYEDVDDILRTNEDLVVKS-----SSKLLPGHIEYSRLVDANIQDPSNGPINSVQFH-RNGQLLLATGLDKKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLP-----DGSQVILSGRRKFFYSLDLVKARVDKIGPLLGREEKSLEFFEVSPDSQMIAFVGNEGYILLVSTKSKQLVGTLKMNGTVRSLAFTEDGQKLLSAGGDGHVYHWDLRTRTCMHKGVDEGCINSTALCTSPLGTHFAAGSDSGVVNIYNREEFLGGKRK---------------PIKTIDNLTAKVDFMKFNHDSQILAICSSMKKSSLKLIHVPSYTVFSNWPAPNTSLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHYHHA 556          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: GAQ90665.1 (WD40 repeat protein [Klebsormidium nitens])

HSP 1 Score: 352.4 bits (903), Expect = 2.700e-93
Identity = 220/559 (39.36%), Postives = 314/559 (56.17%), Query Frame = 0
Query:   68 PKQLKRQKKQGEMQRRRQGKITEADKDEEECMLERLVFGARDTAV-LFNDQE----------AAFQDDRCLGCRAVA----KFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHR-RRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAG-MTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            P + +R+ K    + +   ++       E   LE+ +FG  +     F  +E            F+D R  G +  A    +    PAW DD+DE V VNIA  +RLRKLR + +E  ++GA Y ERLR +  + ++   +WA L            RG+ R   +G W     EEEG+  E G+          + R    LV+ +       KL    LE  R RDAN +EP+K +V++V FHP+   LL TAGLDKT+RFF VDGK+N +V  +F  D+P+  A F      G+  +VV +GRR +FY  D  S    R+  ++GREEKSLE F  SP G   AF G +G++ LV   SKQW G  KMNG+AR+ +++ DG  LL SGGD  +Y WD+R+ RC+ R  +EG   +SAL  S  G   A G++SGVVN+Y  + +   V+ E         ST+  P K + +LTT  D++ FN DGQ+LA+AS+  +D+LR+VH+PS TV+ NWPT ++P+++  +L FSP  G +AVGN +G+VLLYRL HY+ A
Sbjct:    8 PAKRRRKGKNAPPEEKEAERLXXXXXXXEAAHLEKELFGGTEEDFDAFGQEERVEETPVEGVLGFEDRR--GAKGDADEDERAGPRPAWVDDEDEEVTVNIARVNRLRKLRAEEEEVVLTGAQYAERLRTQHVKLNR-GTEWAKLE----------TRGKRRLLHEGGW-----EEEGEEEERGE----------ILREAGDLVVRS-----RTKLPQTVLEATRMRDANQEEPTKGVVRSVCFHPN-AQLLLTAGLDKTVRFFNVDGKKNPRVQSLFLEDMPVAKAGF-----TGDGRKVVAAGRRKWFYVVDLASARVERIGGIVGREEKSLESFALSPLGDQAAFLGNEGHVSLVSLHSKQWIGTLKMNGSARAAAYAPDGNTLLTSGGDGEIYHWDVRTRRCMYRTRDEGCVKSSALDVSSDGRYFATGSDSGVVNVYNRARL--GVDDEPVNEPRGLFSTSPSPLKTVMNLTTVADTVRFNPDGQILAIASRMKKDSLRLVHLPSGTVFQNWPTARSPLQFVHSLDFSPGGGFMAVGNAKGKVLLYRLHHYEHA 525          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: XP_020572561.1 (U3 small nucleolar RNA-associated protein 18 homolog isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 352.4 bits (903), Expect = 2.700e-93
Identity = 220/570 (38.60%), Postives = 323/570 (56.67%), Query Frame = 0
Query:   59 EQEEEGNVVPKQLKRQKKQGEMQRRRQGKITEADKDEEECM-LERLVFGARDTAVLFNDQEAAFQD--------DRCLGCRAVA---------KFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAG-MTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            E ++  +     LKR KK+G     + G+ +  +++E+E   LE  +FG+ ++++ F  +  +  D        D+  G   V          K  R PAW D++DE + V+I S  RL  LR++  EK ISGA+Y  RLRA+ ++ +         PRT   D AE NR R+         +    + D+ +E      D +  G+ RS   LV        + KL P  LE  R  +AN +EPS   + +VQFH   G LLFTAGLD+ LRFFQ+DGKRN  V  +F  D PI +ASF+         QV+++GRR FFY +D V     ++  L GR+EKSLE F  SPD   +AF G +GYI+L+ +K+K+  G  KMNGT RS++F  DG+ L++ GGD  +Y WDLRS RC+ +  +EG   T++L+AS  G + A G+ SG+VN+Y+  D +G  ++               P K++ ++TTTV+ L FNHD Q+LA+ S   +D+L++VH+PS TV++NWP  +T ++YP  + FSP  G +AVGN  G+VLLY+L HY  A
Sbjct:   14 ESKDAADAEDSLLKRSKKRGRAD-DKHGRTSGMEQEEKEIKELESFLFGSLNSSIQFGKEIGSGNDEGPLNFFLDKSSGDDMVVYKEDINQYDKEERKPAWVDEEDEVMEVDIVSVRRLXXLRKEAGEKLISGAEYVSRLRAQHEKLN---------PRT---DWAEFNRKRN---------EILASDDDSNDESGITTGDAEGDGVLRSNYELV-----EKSSVKLLPGLLEYSRLMNANSEEPSNGPINSVQFH-RNGKLLFTAGLDRRLRFFQIDGKRNTLVQSIFLEDCPIRNASFLPNG-----SQVILAGRRKFFYVFDLVKAVVDKIGPLTGRDEKSLELFEVSPDSSTIAFAGNEGYILLISSKTKELIGTLKMNGTVRSLAFVEDGRQLISGGGDGDIYHWDLRSRRCIHKGVDEGCITTTSLSASPDGRLFAAGSSSGIVNIYKGDDFIGGKKK---------------PLKSIENMTTTVNFLKFNHDAQILAICSNMKKDSLKLVHIPSFTVFSNWPP-RTGLQYPRCMDFSPGGGFMAVGNAAGKVLLYKLNHYRNA 534          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: XP_020572559.1 (U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [Phalaenopsis equestris] >XP_020572560.1 U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 352.4 bits (903), Expect = 2.700e-93
Identity = 220/570 (38.60%), Postives = 323/570 (56.67%), Query Frame = 0
Query:   59 EQEEEGNVVPKQLKRQKKQGEMQRRRQGKITEADKDEEECM-LERLVFGARDTAVLFNDQEAAFQD--------DRCLGCRAVA---------KFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASLAG-MTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            E ++  +     LKR KK+G     + G+ +  +++E+E   LE  +FG+ ++++ F  +  +  D        D+  G   V          K  R PAW D++DE + V+I S  RL  LR++  EK ISGA+Y  RLRA+ ++ +         PRT   D AE NR R+         +    + D+ +E      D +  G+ RS   LV        + KL P  LE  R  +AN +EPS   + +VQFH   G LLFTAGLD+ LRFFQ+DGKRN  V  +F  D PI +ASF+         QV+++GRR FFY +D V     ++  L GR+EKSLE F  SPD   +AF G +GYI+L+ +K+K+  G  KMNGT RS++F  DG+ L++ GGD  +Y WDLRS RC+ +  +EG   T++L+AS  G + A G+ SG+VN+Y+  D +G  ++               P K++ ++TTTV+ L FNHD Q+LA+ S   +D+L++VH+PS TV++NWP  +T ++YP  + FSP  G +AVGN  G+VLLY+L HY  A
Sbjct:   22 ESKDAADAEDSLLKRSKKRGRAD-DKHGRTSGMEQEEKEIKELESFLFGSLNSSIQFGKEIGSGNDEGPLNFFLDKSSGDDMVVYKEDINQYDKEERKPAWVDEEDEVMEVDIVSVRRLXXLRKEAGEKLISGAEYVSRLRAQHEKLN---------PRT---DWAEFNRKRN---------EILASDDDSNDESGITTGDAEGDGVLRSNYELV-----EKSSVKLLPGLLEYSRLMNANSEEPSNGPINSVQFH-RNGKLLFTAGLDRRLRFFQIDGKRNTLVQSIFLEDCPIRNASFLPNG-----SQVILAGRRKFFYVFDLVKAVVDKIGPLTGRDEKSLELFEVSPDSSTIAFAGNEGYILLISSKTKELIGTLKMNGTVRSLAFVEDGRQLISGGGDGDIYHWDLRSRRCIHKGVDEGCITTTSLSASPDGRLFAAGSSSGIVNIYKGDDFIGGKKK---------------PLKSIENMTTTVNFLKFNHDAQILAICSNMKKDSLKLVHIPSFTVFSNWPP-RTGLQYPRCMDFSPGGGFMAVGNAAGKVLLYKLNHYRNA 542          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: OAE34627.1 (hypothetical protein AXG93_167s1380 [Marchantia polymorpha subsp. ruderalis] >PTQ38452.1 hypothetical protein MARPO_0051s0055 [Marchantia polymorpha])

HSP 1 Score: 351.3 bits (900), Expect = 6.100e-93
Identity = 208/521 (39.92%), Postives = 297/521 (57.01%), Query Frame = 0
Query:   95 EEECMLERLVFG--ARDTAVLFNDQEAA---FQDDRCLGCRAVAKFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTGGLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRSTRCLARFHNEGGTVTSALAASL-AGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHYDRA 610
            E+   LE ++FG  AR+T V  ND   A   F   R +    V K  + P W D+D+E   + ++  +RLRKLR++ +E+ +SG DY  RLRA+    ++    WA LP           R   +     W  ++  EEG  G E D  E  ++       ++ LV+ +     + +L    LE+   RD N +EPS A++Q+VQFH     +L TAG DK LR FQ+DGKRN K+  +F  D PI  A+FV      +  +VV S RR  ++ YD   G   +++ L+GR EKSLE F  SPD + +AF G DGYI+L    +KQW    KMNG+ RS+SF+ +G HLL++GGD  +Y WDLR+ RC  +  +EG   +S+LA S  + + A G+ SGVVN+Y     +G   R               P K+L +L TT D+L FN+D Q+LA+ S+  ++AL++VH+PS T+++NWP+ QTP+ Y  +L FSP  G LAVGN  GRVLLYRL+HY  A
Sbjct:   27 EQAAKLESILFGKSARETDV-GNDLNGAVDIFSSSREVA--VVEKVGKKPVWLDEDEEKTVIRVSGINRLRKLRKEQEEEHVSGGDYVSRLRAQHTVLNR-GTSWAELP---------SERTIRKEELPGWGSESDTEEG--GREEDNGELVNEEHQTLLDSSDLVVKS-----SSRLPHGVLEITAMRDGNSEEPSNAVIQSVQFH-RNAQILMTAGFDKRLRLFQIDGKRNPKLQSIFLEDFPIHKAAFVP-----DGSKVVASSRRKHYFVYDMEGGQVQKINPLMGRTEKSLESFEVSPDNKQIAFLGNDGYILLSSLATKQWVANLKMNGSVRSVSFAENGNHLLSTGGDGEIYHWDLRTRRCFHKGTDEGCVKSSSLAVSSDSKLFATGSGSGVVNVYNREAFIGGATR---------------PVKSLMNLVTTADNLKFNNDSQILAIVSRMKKNALKLVHLPSYTIFSNWPSQQTPLHYVHSLDFSPGGGYLAVGNAVGRVLLYRLRHYANA 506          
BLAST of NO13G02240 vs. NCBI_GenBank
Match: GAX18594.1 (U3 small nucleolar RNA-associated protein 18 [Fistulifera solaris])

HSP 1 Score: 348.2 bits (892), Expect = 5.200e-92
Identity = 220/533 (41.28%), Postives = 301/533 (56.47%), Query Frame = 0
Query:   78 GEMQRRRQGKITEADKDEEECMLERLVFGARDTAVLFNDQEAAFQDDRCLGCRAVAKFARAPAWQDDDDEAVRVNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRTPADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRSTAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTG---GLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFEQVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFTGKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRWDLRST-RCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGRVEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDRDALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLLYRLKHY 607
            GE+  R Q  I      +   +++R     + T  L N ++   +DD        A+    P WQDDDD+   + I  K+RL KLR    E  +S    + RLR  +Q+S     +WA LP                            EE D  EE +    D D           +L  GG      L+P  L  VRC DANM +P++A VQAV FHP +     LL TAGLDKTLRFFQV  +++EK+ G+ FP LPI SASF+     GE   VVV+GRRPFFY Y+ VSG    V R++GREEKS E+ VASPDG  +A  G DGY++L    SKQ     K+NG+ R+++F+ D + +LASG D  VYRWDLR+T RC  R+ N+ GT+TSALAAS +   AVGAESGVVNLY+ S ++                      K++ +L+T+ D + FN DG++LA++++ ++  L+++HVPS TV++NWPT +TP+ Y  +L FSP S  LA+GND+G+ LLY+LKHY
Sbjct:   37 GEVLERSQEIIQSKPAGDSLFVIDR-QGETQTTTELKNVRDLEIEDDN------DAEETDGPVWQDDDDD---IQIHLKNRLAKLRHNRQEGAVSTQQLEGRLRTYYQQSLTAQTNWAKLP----------------------------EENDQTEE-EHAVVDTD---------EPMLSIGG------LKPTILATVRCPDANMADPNQAAVQAVHFHPGSDPDRPLLLTAGLDKTLRFFQVGEEKSEKIHGIHFPKLPIFSASFL-----GETGSVVVTGRRPFFYIYNAVSGNLDHVPRILGREEKSWEKSVASPDGSTVALIGNDGYVVLWDVASKQINKTLKINGSVRAITFTPDNREILASGSDGDVYRWDLRNTRRCAERWSNQDGTITSALAAS-SRHVAVGAESGVVNLYKSSHLV----------------------KSVLNLSTSADLVKFNSDGEILALSTRREKMGLKLLHVPSATVFSNWPTSKTPLNYVWSLDFSPASRFLAIGNDKGKCLLYQLKHY 487          
The following BLAST results are available for this feature:
BLAST of NO13G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21880.11.500e-18459.23u3 small nucleolar rna-associated protein 18 [Nann... [more]
XP_002185694.14.800e-9843.70anthranilate synthase. anthranilate synthetase. ch... [more]
PNX71852.11.200e-9640.11U3 small nucleolar RNA-associated protein 18 [Trif... [more]
CBJ32524.17.200e-9453.54conserved unknown protein [Ectocarpus siliculosus][more]
XP_004485620.12.700e-9337.42PREDICTED: U3 small nucleolar RNA-associated prote... [more]
GAQ90665.12.700e-9339.36WD40 repeat protein [Klebsormidium nitens][more]
XP_020572561.12.700e-9338.60U3 small nucleolar RNA-associated protein 18 homol... [more]
XP_020572559.12.700e-9338.60U3 small nucleolar RNA-associated protein 18 homol... [more]
OAE34627.16.100e-9339.92hypothetical protein AXG93_167s1380 [Marchantia po... [more]
GAX18594.15.200e-9241.28U3 small nucleolar RNA-associated protein 18 [Fist... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001674NSK001674Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02240.1NO13G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100159g14gene8549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02240.1NO13G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02240 ID=NO13G02240|Name=NO13G02240|organism=Nannochloropsis oceanica|type=gene|length=1830bp
ATGCCAGGCGCCCACAGGTCCGGCCGGCGTGGCAATGGAGAGGGAGGTGC
CAAGGCAGAGAGTCGGCGGCAGGAGATGAACGAAGGTGATGCTGCCGTGC
CTGCTCAAGATGAGGAGGACACATCGCCCTTGTTCTATCTGGACCGGGAA
GAGTCGGTGGAAGTGGAAGGGTTCGAGCAAGAGGAGGAGGGCAACGTCGT
ACCCAAGCAGCTCAAGCGCCAGAAGAAGCAAGGAGAGATGCAACGGCGGC
GGCAGGGAAAGATTACTGAGGCCGACAAGGACGAGGAAGAATGCATGCTG
GAACGTTTGGTATTTGGCGCACGGGATACGGCTGTGCTCTTTAACGATCA
AGAAGCTGCTTTCCAAGACGACAGATGCCTGGGTTGTCGTGCAGTAGCGA
AGTTTGCACGGGCGCCTGCCTGGCAAGACGATGACGACGAGGCGGTGCGT
GTGAACATTGCGAGCAAGGACCGACTGCGGAAGTTGCGTCGGCAGCCCGA
CGAGAAGGATATCAGTGGGGCAGACTACCAGGAGCGGCTGCGGGCGCGCT
TCCAAGAAAGCAGTAAGATGGCGCTGGACTGGGCGACCTTGCCTCGGACG
CCTGCGGACGACGCAGCAGAAGGGAATAGAGGGAGGCATCGTCGTCGGCA
AGGAGAGTGGAGAGGAGATACAAGTGAGGAAGAAGGAGATAACGGGGAGG
AAGGAGACAAGCAGGAGTATGATGATGATTTTGGTGGTTTGTTTCGAAGC
ACCGCGCCCTTGGTGCTGGGTGCTGGTGGGAATGGCGGTAACGAAAAACT
GCAGCCGGAGACCTTGGAGGTGGTACGTTGCAGGGACGCCAACATGCAAG
AACCCTCCAAGGCCATGGTTCAAGCGGTACAATTTCATCCCTCGACGGGC
GGATTGTTGTTTACGGCGGGCTTGGACAAGACACTGCGATTTTTTCAGGT
GGATGGGAAGAGGAACGAAAAGGTGGCTGGGGTGTTTTTCCCTGACCTGC
CCATCCTGTCGGCTTCTTTCGTGGATCCGTCGAGGGCTGGTGAATTTGAA
CAGGTGGTGGTGAGTGGGAGAAGGCCTTTTTTTTATTGGTATGACACCGT
TTCGGGAACGGCTGTGAGGGTTCATCGATTGATAGGACGAGAAGAAAAGA
GCTTGGAGAGGTTCGTGGCTTCTCCGGATGGGCAGTGGCTGGCATTCACG
GGTAAGGACGGGTATATCATATTGGTGGGCGCAAAGAGCAAGCAGTGGGC
TGGGGAGTTCAAGATGAATGGGACGGCGCGATCTATGTCGTTCAGTGCGG
ATGGCCAGCATCTGCTCGCCTCGGGGGGCGACGCCGTTGTGTACCGATGG
GATTTGCGCTCGACCCGATGCCTCGCTCGGTTCCACAACGAGGGAGGAAC
GGTTACTTCAGCCTTGGCTGCTTCGTTGGCGGGTATGACAGCCGTGGGGG
CCGAAAGTGGAGTGGTGAATCTATACGAGGACTCCGACGTGTTGGGAAGG
GTGGAGAGGGAGGGAGGGCTGGCATTGGCGCGACATGCCTCAACTGCCTT
GCCACCCACCAAGGCGCTGACCCACTTGACGACCACGGTAGACTCGCTGG
CTTTCAATCATGACGGGCAGCTGTTGGCGATGGCGTCGAAGTGGGATCGG
GACGCCCTGCGGGTGGTGCACGTGCCCTCTCGCACGGTGTATGCGAACTG
GCCGACGGGGCAGACGCCTGTAAGGTATCCGTCTGCACTGGCTTTCAGTC
CGAATAGTGGGATGCTCGCAGTGGGGAATGATAGGGGGCGGGTGTTACTG
TATCGGTTGAAACATTACGATAGAGCGTGA
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protein sequence of NO13G02240.1

>NO13G02240.1-protein ID=NO13G02240.1-protein|Name=NO13G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MPGAHRSGRRGNGEGGAKAESRRQEMNEGDAAVPAQDEEDTSPLFYLDRE
ESVEVEGFEQEEEGNVVPKQLKRQKKQGEMQRRRQGKITEADKDEEECML
ERLVFGARDTAVLFNDQEAAFQDDRCLGCRAVAKFARAPAWQDDDDEAVR
VNIASKDRLRKLRRQPDEKDISGADYQERLRARFQESSKMALDWATLPRT
PADDAAEGNRGRHRRRQGEWRGDTSEEEGDNGEEGDKQEYDDDFGGLFRS
TAPLVLGAGGNGGNEKLQPETLEVVRCRDANMQEPSKAMVQAVQFHPSTG
GLLFTAGLDKTLRFFQVDGKRNEKVAGVFFPDLPILSASFVDPSRAGEFE
QVVVSGRRPFFYWYDTVSGTAVRVHRLIGREEKSLERFVASPDGQWLAFT
GKDGYIILVGAKSKQWAGEFKMNGTARSMSFSADGQHLLASGGDAVVYRW
DLRSTRCLARFHNEGGTVTSALAASLAGMTAVGAESGVVNLYEDSDVLGR
VEREGGLALARHASTALPPTKALTHLTTTVDSLAFNHDGQLLAMASKWDR
DALRVVHVPSRTVYANWPTGQTPVRYPSALAFSPNSGMLAVGNDRGRVLL
YRLKHYDRA*
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Synonyms
Publications