NO13G01130.1, NO13G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01130.1
Unique NameNO13G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr13:351085..352540 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:351085..352540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01130NO13G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01130.1NO13G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01130.1.cds1NO13G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01130.1 ID=NO13G01130.1|Name=NO13G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp
AGGGGGAGGAGGAGGGCGGGAAGGAGGGCGGGAGGGAGGACGGGAGAGCC
AGTTGTCCTCTCCTGTTGGGGGGTGGACCAGCCATCACACTCTTGGCAGG
TCACGAGCCCGTCTAGCCCTGCGTCCCCCCCTTCCTCCCTTTCAACCTGC
TGTTTCTCGCTCCTGGCCACCACTACCACACGCGCATGCCGCTGCCCCTC
CCTCCCTCCCTTCCTCCCCCTCCCCAACCTCTTTGGCATCACGGGCGTCG
TTTTCATTGCTTGACCCGGTGGCTCGTCGACAGGAGGTCCACAGACGTTA
CACCCAACTGTTGAAAACCCGTTTTGGACGAGGAAAAGGAGGAGGAGGAC
GGGGAGGAGGAGGACGGGGAGGGAGGGGCGGAGGGATGTTGGGGTTCGGG
AGCAGTAGTAGACGGGCAGTGATTGAGCCTGTGGTAGTGAGTAGGATGAA
GAGAGGAGGAGGAAAGAGGGGGGGAGGGAGGGGGGGAGGGAGGGCAGGAA
GGAGGGGAGATGAGGAGACTTTGTTTCCGGGAGAGGTGGAAGCGAGCTCG
GTGGGTTGGTTTGATGAGGAGGACGACGAAGAGGAGAAGAGTGAGGGAGG
GAGTGGAGGAGGGGAGTATTATGGATTGACTTCTTTTGTGAGAGCCAAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGACCAGTATCAGCACCGGCAGCAA
TGCTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTG
TCAGCAACAGAAGCATTCTGCCTCAGCACCGCTAAGCCCTTCGAGTTGTG
TGAGTGTGATAAGTATGGTGGGCTCCCTACCTCCCCAGCAGGAGGACCCG
GAGGTAGAGGGAAAAGGAGGGAAGGAGGAAGGAGAAGGAGGAGGAGGAAA
AGGAGGGCCGAGCACACTTTCGCCCACACGCAGAGGGAGGAGGATCGACG
AGATGTACGAAGAGGGGGAGGACGAGGAGGACGAGGAGGACGAGGAGGAG
GGCATTTCTCTCTACCACCCTGAAGCCCTCCCTTCCCCTTGCCGTCACGA
CCTCACCGAGGAGGAACGCCTCTTCCACTCTTCTCTCCCTCCTTCCCTTC
CTCCTTCCCGCCTTGTCCCCGATGGGAGCATCAAGGGCCTTCAGCAGCAA
GTGGCTTTTCTATACACCCACCTCCACGCCCTCGTCGAGAATGAGGAAGA
GCTGTCTGTCCTACATCAAACCTTGACACATAAAATAAGGCAAGTGCAAC
GGGCGCGCCTTGACGAAAGCGAGATGATGGTGGAAGGAATGAGCAAGGCG
GAAAGGGAATATGCGAGGTTGGGGAGGCTGAAGGAGAAGCTAAGAAGAAG
GGTATTGGTGATGAGGAGGGAGGGGGGGAGATAGCGAGGGAGGAAGAAGA
GAGGGATGAGCTGAGAAGGAGAAGGGCGGTGGTGGTGGAGGAGGGAGGGA
GGGAGG
back to top

protein sequence of NO13G01130.1

>NO13G01130.1-protein ID=NO13G01130.1-protein|Name=NO13G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MLGFGSSSRRAVIEPVVVSRMKRGGGKRGGGRGGGRAGRRGDEETLFPGE
VEASSVGWFDEEDDEEEKSEGGSGGGEYYGLTSFVRAKGGGGGGGGGDQY
QHRQQCYQQQQQQQQQQQQQQCQQQKHSASAPLSPSSCVSVISMVGSLPP
QQEDPEVEGKGGKEEGEGGGGKGGPSTLSPTRRGRRIDEMYEEGEDEEDE
EDEEEGISLYHPEALPSPCRHDLTEEERLFHSSLPPSLPPSRLVPDGSIK
GLQQQVAFLYTHLHALVENEEELSVLHQTLTHKIRQVQRARLDESEMMVE
GMSKAEREYARLGRLKEKLRRRVLVMRREGGR*
back to top

mRNA from alignment at chr13:351085..352540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01130.1 ID=NO13G01130.1|Name=NO13G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp|location=Sequence derived from alignment at chr13:351085..352540- (Nannochloropsis oceanica)
AGGGGGAGGAGGAGGGCGGGAAGGAGGGCGGGAGGGAGGACGGGAGAGCC AGTTGTCCTCTCCTGTTGGGGGGTGGACCAGCCATCACACTCTTGGCAGG TCACGAGCCCGTCTAGCCCTGCGTCCCCCCCTTCCTCCCTTTCAACCTGC TGTTTCTCGCTCCTGGCCACCACTACCACACGCGCATGCCGCTGCCCCTC CCTCCCTCCCTTCCTCCCCCTCCCCAACCTCTTTGGCATCACGGGCGTCG TTTTCATTGCTTGACCCGGTGGCTCGTCGACAGGAGGTCCACAGACGTTA CACCCAACTGTTGAAAACCCGTTTTGGACGAGGAAAAGGAGGAGGAGGAC GGGGAGGAGGAGGACGGGGAGGGAGGGGCGGAGGGATGTTGGGGTTCGGG AGCAGTAGTAGACGGGCAGTGATTGAGCCTGTGGTAGTGAGTAGGATGAA GAGAGGAGGAGGAAAGAGGGGGGGAGGGAGGGGGGGAGGGAGGGCAGGAA GGAGGGGAGATGAGGAGACTTTGTTTCCGGGAGAGGTGGAAGCGAGCTCG GTGGGTTGGTTTGATGAGGAGGACGACGAAGAGGAGAAGAGTGAGGGAGG GAGTGGAGGAGGGGAGTATTATGGATTGACTTCTTTTGTGAGAGCCAAAG GAGGAGGAGGAGGAGGAGGAGGAGGAGACCAGTATCAGCACCGGCAGCAA TGCTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTG TCAGCAACAGAAGCATTCTGCCTCAGCACCGCTAAGCCCTTCGAGTTGTG TGAGTGTGATAAGTATGGTGGGCTCCCTACCTCCCCAGCAGGAGGACCCG GAGGTAGAGGGAAAAGGAGGGAAGGAGGAAGGAGAAGGAGGAGGAGGAAA AGGAGGGCCGAGCACACTTTCGCCCACACGCAGAGGGAGGAGGATCGACG AGATGTACGAAGAGGGGGAGGACGAGGAGGACGAGGAGGACGAGGAGGAG GGCATTTCTCTCTACCACCCTGAAGCCCTCCCTTCCCCTTGCCGTCACGA CCTCACCGAGGAGGAACGCCTCTTCCACTCTTCTCTCCCTCCTTCCCTTC CTCCTTCCCGCCTTGTCCCCGATGGGAGCATCAAGGGCCTTCAGCAGCAA GTGGCTTTTCTATACACCCACCTCCACGCCCTCGTCGAGAATGAGGAAGA GCTGTCTGTCCTACATCAAACCTTGACACATAAAATAAGGCAAGTGCAAC GGGCGCGCCTTGACGAAAGCGAGATGATGGTGGAAGGAATGAGCAAGGCG GAAAGGGAATATGCGAGGTTGGGGAGGCTGAAGGAGAAGCTAAGAAGAAG GGTATTGGTGATGAGGAGGGAGGGGGGGAGATAGCGAGGGAGGAAGAAGA GAGGGATGAGCTGAGAAGGAGAAGGGCGGTGGTGGTGGAGGAGGGAGGGA GGGAGG
back to top

Coding sequence (CDS) from alignment at chr13:351085..352540-

>NO13G01130.1 ID=NO13G01130.1|Name=NO13G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr13:351085..352540- (Nannochloropsis oceanica)
ATGTTGGGGTTCGGGAGCAGTAGTAGACGGGCAGTGATTGAGCCTGTGGT
AGTGAGTAGGATGAAGAGAGGAGGAGGAAAGAGGGGGGGAGGGAGGGGGG
GAGGGAGGGCAGGAAGGAGGGGAGATGAGGAGACTTTGTTTCCGGGAGAG
GTGGAAGCGAGCTCGGTGGGTTGGTTTGATGAGGAGGACGACGAAGAGGA
GAAGAGTGAGGGAGGGAGTGGAGGAGGGGAGTATTATGGATTGACTTCTT
TTGTGAGAGCCAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACCAGTAT
CAGCACCGGCAGCAATGCTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTGTCAGCAACAGAAGCATTCTGCCTCAGCACCGCTAA
GCCCTTCGAGTTGTGTGAGTGTGATAAGTATGGTGGGCTCCCTACCTCCC
CAGCAGGAGGACCCGGAGGTAGAGGGAAAAGGAGGGAAGGAGGAAGGAGA
AGGAGGAGGAGGAAAAGGAGGGCCGAGCACACTTTCGCCCACACGCAGAG
GGAGGAGGATCGACGAGATGTACGAAGAGGGGGAGGACGAGGAGGACGAG
GAGGACGAGGAGGAGGGCATTTCTCTCTACCACCCTGAAGCCCTCCCTTC
CCCTTGCCGTCACGACCTCACCGAGGAGGAACGCCTCTTCCACTCTTCTC
TCCCTCCTTCCCTTCCTCCTTCCCGCCTTGTCCCCGATGGGAGCATCAAG
GGCCTTCAGCAGCAAGTGGCTTTTCTATACACCCACCTCCACGCCCTCGT
CGAGAATGAGGAAGAGCTGTCTGTCCTACATCAAACCTTGACACATAAAA
TAAGGCAAGTGCAACGGGCGCGCCTTGACGAAAGCGAGATGATGGTGGAA
GGAATGAGCAAGGCGGAAAGGGAATATGCGAGGTTGGGGAGGCTGAAGGA
GAAGCTAAGAAGAAGGGTATTGGTGATGAGGAGGGAGGGGGGGAGATAG
back to top
Synonyms
Publications