NO13G00960, NO13G00960 (gene) Nannochloropsis oceanica

Overview
NameNO13G00960
Unique NameNO13G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2432
Alignment locationchr13:311116..313547 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:311116..313547 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00960 vs. NCBI_GenBank
Match: EWM21763.1 (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana] >EWM21764.1 hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 1.700e-43
Identity = 85/108 (78.70%), Postives = 99/108 (91.67%), Query Frame = 0 
Query:    1 MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSVACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQ-VALNIERPSSYGATPR 108
            M LPCTTECCAPCCG+FSIIG +FLIILGIIV+KQPIF+HG+TEP  S+VAC+GGAGIYAGTLALC+ AWMYDKKKK+ RAA+AGLLK+E+ V+LNI+RP SYGAT R
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSYGATTR 108
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BLAST of NO13G00960 vs. NCBI_GenBank
Match: EWM21762.1 (hypothetical protein Naga_100298g6 [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 2.800e-41
Identity = 81/103 (78.64%), Postives = 95/103 (92.23%), Query Frame = 0 
Query:    1 MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSVACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQ-VALNIERPSSY 103
            M LPCTTECCAPCCG+FSIIG +FLIILGIIV+KQPIF+HG+TEP  S+VAC+GGAGIYAGTLALC+ AWMYDKKKK+ RAA+AGLLK+E+ V+LNI+RP SY
Sbjct:    1 MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAVACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRPGSY 103
[Close]
BLAST of NO13G00960 vs. NCBI_GenBank
Match: GBG25882.1 (Hypothetical Protein FCC1311_021012 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 67.0 bits (162), Expect = 4.100e-8
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 0 
Query:    5 CTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSVAC---FGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQVAL 95
            C+T+  + CC LFS+IG VFL +LGI++  Q  +IHGI +   +  A    F GAGIYA    +C+ +++   KK+Q+  +S     D  + L
Sbjct:   14 CSTKAGSVCCALFSLIGTVFLAVLGILMTIQWEYIHGIHDEHEAEYAATNSFIGAGIYAAIFCMCMVSFVIHSKKEQKTTSSKAATSDNNIEL 106
The following BLAST results are available for this feature:
BLAST of NO13G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21763.11.700e-4378.70hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
EWM21762.12.800e-4178.64hypothetical protein Naga_100298g6 [Nannochloropsi... [more]
GBG25882.14.100e-837.63Hypothetical Protein FCC1311_021012 [Aurantiochytr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001797NSK001797Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00960.1NO13G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672342gene_6914Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100298g6gene8664Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00960.1NO13G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00960 ID=NO13G00960|Name=NO13G00960|organism=Nannochloropsis oceanica|type=gene|length=2432bp
ACAGGGGTTGGTTTGCTTGCTGGGTTGTGTGCGTCGACAGCAGCTGCGTT
TCCTTACCTCTTTCGGGACGACCTTTGGGACGAGAGAGGAACGGCAAGGT
CAACACGACGAGGCCAACTAGCATTTGTGTGCAAGACCCACACCGCGCGC
CTGCCTGTGACCACGCCGATAGCTAGCTCGACGACATCCACCACTGCAAG
ATGGGCCTGCCGTGCACGACTGAGTGCTgtaagtagtagtgatctgaccg
caagaaaaatctctccgctcctgtctgcctctgtcccgtccctcatcggt
gcaaccaccacctgaatccactcccgattctctcccacgcacaccctgcc
atctttccctctcctctttctccataacagGCGCGCCATGTTGCGGATTG
TTCTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGA
GAAGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCG
TGGCGTGCTTTGGTGGCGgtacgtcagagaagagagacggagggagtgtg
ggatcgaagaaaggagagggtgactgttgagtcgagagatgtgacaaggc
tgcatgtctatcgatatgttgaagattcgttcgtctggattcctctcacc
ctcctcctccctccctccttccctccctccctccttccctccctctcccc
ttttctgcttcgcctccaccccttcagCCGGTATATATGCAGGCACGCTG
GCTTTGTGCATCGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCG
GGCTGCTAGTGCGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCG
AACGGCCGAGTTCTTACGGTGCGACCCCCCGCTAAGCTTGATTTGTGTGA
TTAATTACTTGTAGTATATGATGTATCAGACACGTAAAACACCCGTATCT
TATTCATTTGATTGCTTTAAATGTGTTGTTTGACATACAGGCGTATGAGA
GATGGTTGTGCCTTTCTTCTTCTTCATCTCTATTCCTTCCGCGGTGGTGA
TCTTGGCACATTGAGTGTATGACAAGACACATAATTTAGGATTTACAATA
CTGAGAAGCACCGCAGTGAGGATGTAGAGTGAGTAAGTGAGCCTTAGTTG
TAGCGACAGAAGCTGCTGGCGGTGGTACTGCCTCCTCCCCCACCTCTTCC
TCCTTTTCTCCTCCTCTTGCCCTCCCTCCTCCTCTTGTCCCGTGTGGTTT
TCACCACCCGATACCGCCGCTGCTGTATCGGTTTTGTCATGCGCGCACCC
CTTGTTGGGTTGGGTCATGGACCCACAAGAAGAAGTACGAGGGAGGAAGG
GAGGGAAGAGGCGAACGAGCCTGAAGGCAGACAGGACAGGAAGAATAAAG
TTGTTGTAGAGCGAGGTCTTGAACAACTAGGAAAGGGAGTCTCGGCATCT
CCACACCGCTTGCCCTTTCCTCATGGCGTGCCGGTATGGTGCTTTGTCTT
GTCTACTTCCTTTCCAATTTCCTCCCTGCCCTCCCTCCTTTCTTGGAGGA
GAGGTGCGGGATATGCTTAGCACTGATTGGGTTTTCTTCTTGTTCTTTTC
TAACGTCTAATAAGAGGAAGGACACTGGTGATTTCAAAACGTGTCTTGAG
AACAAGTGTGAGCAATAGAATGGGAAGGGGGGGAAGCTGCGGAATTGACC
TTCTTCGAGCAATCAGACTGCCCATCGAAACAACTAACATCCTTTTTCTT
CCCTTCTTCCTTCTGACCACAGATGCCGGTACTGAGATGACGCGAGTGGC
TTCCCCAGGACGAAAGGCCTAAAGACAGGAAATAAGTGCGGGGGGAGGGC
GGGACCATTATGGGAGATGAAATAACAACAATTACCAACAACAAATTGAG
GATGATGGTGATCAAGGCAACACCCCTAGAATGGAGAAAATGAAGAGAGT
CCTGCAGAGAAGGAGGAAGAGCCACACATCAGTCGATCGTTGCCACGGCT
GCTGCCGCGGTGACATACTGTCAGCACCAGTATCTGTAGGATCAGGAACA
GTAGGGAAGAGAATGGTAAGGAGGGAAGGACGCGAACCGTAAAAAAGAGG
GGACTTCTTTTTTATTTATTAATTCATTTGTATCCTTGACCATGTGTGGA
GGCGGTTCCGTGCTGGGGAAGACGGTGATGAGATGGGAAGAGCGGACTTA
CCTTCCTGGCGTCAGGGTCAAGGCGCCTGCCTCTGTCACTCTCGTTCGGA
ATTATAGAGCGACCGATAAATATTTTGTGAAAGAAAATAGGAAAGGGGGA
AAAGAGGGAGAAAGATAGGGAGCAAAACAGATAGAGAGTATATGATCAGG
GGAAGAGAAAAGAAGAAGAAACCAGCACGCAAATATACCGACGCAAACCT
GTCTGTCGATGAACGAGAAGAAAGAAGAATCA
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protein sequence of NO13G00960.1

>NO13G00960.1-protein ID=NO13G00960.1-protein|Name=NO13G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSV
ACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQVALNIERPS
SYGATPR*
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Synonyms
Publications