NO13G00400.1, NO13G00400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00400.1
Unique Name	NO13G00400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1776
Alignment location	chr13:130931..133747 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:130931..133747 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G00400.1 vs.
Match: EWM20247.1 (hypothetical protein Naga_100363g6, partial [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 2.300e-81
Identity = 187/395 (47.34%), Postives = 239/395 (60.51%), Query Frame = 0

Query:    1 MELPAGLSVVKLKARPF-RMLSPAQIIQNPDGTTAIYWTDFDF--KKSSKRVFQAVVMADDCAPEMLDVTALAYLVNATDLSAYCAVPLVDPVVLRVRYPGNKKVSEHALSRSVTCAPTPAPSVNPAIPFQIFGEGQRCLQAGQLAPF-DRRLSALHNADEGLKSLSTIDGQHRQLPPVEINNPTECFDYCSINGNEPSPFFFNWNTATNQCFCCGGEC-DLIVEPDFNAYKVV----LAGTRAPTASPSMSPTTAPMQSPTASPTASLSASPTASPTASPTASPTASPTASPTAIPSASPTPAPIGPGVIWTQQTNSTQQQWESITSSSDGTKLAAGAHEGFIYTSTDSGVTWTQQTNSTQQQWESIASSSNGTKLAAAVYEGFIYTSTDSGVT 387
            + LP GLSV ++  RP  +  +  +I++N DGTT IYW +  F  +K  KR F+  V ADDCAPE L + A AY VN T   A C  PL     + VRY  +K         + TCAPTP P+ NPA PF + G GQR  Q G+LAPF DRRLS     D      +    Q+RQL    I+ P  C++YCS+N  + +PF F+WNT T QCFCC   C   I +PD + Y+VV    L  T  PTA+P+M+PT  P   PT +PT + +  PTA+PT +PT  PT  PTA+PT  P+  PT AP      WT+QT +  + W SI SSSDGTKLAA  + G IY STD+GVTWT+QT +  +QW  IASSS+G  LAA V  G+IYTS+D+GVT
Sbjct:   70 VNLPNGLSVERIAMRPSPKPFTSPEIVKNADGTTVIYWLNIAFSKRKGGKRRFRVKVKADDCAPESLRLNAFAYTVNGT--GASCITPLAKSATVNVRYSSSK--------NAATCAPTPVPTTNPAQPFIVLGAGQRFSQGGRLAPFQDRRLSVPSPIDMHQDKTAPSHLQNRQLQ--SIDTPDACYEYCSLNAGQETPFLFSWNTVTRQCFCCVAVCTPFIFDPDSSVYEVVVPKILPPTMQPTAAPTMAPTMQPTMQPTTAPTMAPTMQPTAAPTMAPTMQPTMQPTAAPTMAPTMQPTAAPTN---TWTEQTAAGSRDWRSIASSSDGTKLAAVVYNGSIYKSTDAGVTWTEQTAAGSRQWNGIASSSDGMNLAAVVNPGYIYTSSDAGVT 449

The following BLAST results are available for this feature:

BLAST of NO13G00400.1 vs.

BLAST of NO13G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20247.1	2.300e-81	47.34	hypothetical protein Naga_100363g6, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00400	NO13G00400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00400.1	NO13G00400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00400.1.cds1	NO13G00400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds2	NO13G00400.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds3	NO13G00400.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds4	NO13G00400.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds5	NO13G00400.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds6	NO13G00400.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds7	NO13G00400.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00400.1.cds8	NO13G00400.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:130931..133747-
coding sequence from alignment at chr13:130931..133747-

mRNA sequence

>NO13G00400.1 ID=NO13G00400.1|Name=NO13G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCCGTCCGTT
CCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGGACAACGG
CCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCGCGTCTTT
CAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTGATGTCAC
AGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTACTGCGCTG
TACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGGCAACAAG
AAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGCCGACCCC
AGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGTGAGGGGC
AGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCGTTTGTCG
GCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTATTGACGG
CCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACGGAGTGCT
TCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTTCTTCAAC
TGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAATGCGACTT
GATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCGGGGACCA
GGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACCGATGCAG
AGCCCCACTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTACAGCCTC
CCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACGGCTTCAC
CCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGGACCGGGC
GTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCGAT
CACATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGCGCATGAAGGCT
TCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACAAAC
AGTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATGGCACGAA
ACTTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCGACCGACTCGG
GCGTCACCTGGACGCAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCG
ATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCCTCGTATATGAAGG
CTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACCA
ACAGTACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGATGGCACG
AAACTTGCCGCCCTCGTGTATAACGGCTTCATCTATACATCCACCGACTC
GGGCGTTACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAGTGGTATC
GGATGGCATCCTCGTTGGATGGCACGAAACTTGCCGCCGGGGTGTATAAC
GGTTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGCAGCAAAC
AAACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCGGATGGCA
CGAAACTTGCCGCCGCGGTAAATGATGGCTTCATCCATACGTCGACCGAC
TCGGGCGTCACCTGGACGCCGCAAAGCGACAGTACCCAGCAAAGCTGGTA
TGCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGTAGTGTATG
ATGGCTTCATACACACGTCCCCCTAG

protein sequence of NO13G00400.1

>NO13G00400.1-protein ID=NO13G00400.1-protein|Name=NO13G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MELPAGLSVVKLKARPFRMLSPAQIIQNPDGTTAIYWTDFDFKKSSKRVF
QAVVMADDCAPEMLDVTALAYLVNATDLSAYCAVPLVDPVVLRVRYPGNK
KVSEHALSRSVTCAPTPAPSVNPAIPFQIFGEGQRCLQAGQLAPFDRRLS
ALHNADEGLKSLSTIDGQHRQLPPVEINNPTECFDYCSINGNEPSPFFFN
WNTATNQCFCCGGECDLIVEPDFNAYKVVLAGTRAPTASPSMSPTTAPMQ
SPTASPTASLSASPTASPTASPTASPTASPTASPTAIPSASPTPAPIGPG
VIWTQQTNSTQQQWESITSSSDGTKLAAGAHEGFIYTSTDSGVTWTQQTN
STQQQWESIASSSNGTKLAAAVYEGFIYTSTDSGVTWTQQTNSTQQQWES
IASSSDGTKLAALVYEGFIYTSTDSGVTWTQQTNSTQQIWQSITSSSDGT
KLAALVYNGFIYTSTDSGVTWTKQTNSTQQKWYRMASSLDGTKLAAGVYN
GFIYTSTDSGVTWTQQTNSTQQIWESIASSSDGTKLAAAVNDGFIHTSTD
SGVTWTPQSDSTQQSWYAIASSSDGTKLAAVVYDGFIHTSP*

mRNA from alignment at chr13:130931..133747-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00400.1 ID=NO13G00400.1|Name=NO13G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2817bp|location=Sequence derived from alignment at chr13:130931..133747- (Nannochloropsis oceanica)
ATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCCGTCCGTT
CCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGGACAACGG
CCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCGCGTCTTT
CAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTGATGTCAC
AGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTACTGCGCTG
TACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGGCAACAAG
AAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGCCGACCCC
AGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGTGAGGGGC
AGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCGTTTGTCG
GCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTATTGACGG
CCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACGGAGTGCT
TCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTTCTTCAAC
TGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAATGCGACTT
GATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCGGGGACCA
GGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACCGATGCAG
AGCCCCACTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTACAGCCTC
CCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACGGCTTCAC
CCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGGACCGGGC
GTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCGAT
CACATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGCTTCACGC
ATGGCGCACGACACCACCATCCTGTATGCTGGTCGCGTCGTAGTAAGATG
TATCGTCGAGAGTCTATATGTGTTGCTCTATCTGACGCGCCATCTTCGAC
TACCCATCCAATCCCCCTTAGAAACTTGCCGCCGGGGCGCATGAAGGCTT
CATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACAAACA
GTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATGGCACGGTA
CGTGGTTGGATCCGGGGCTTCACGCATGGCGCACGACACCACCATCCTGT
ATGCTGGTCGCGTCGTAGTAAGATGTATCGTCGAGAGTCTATATGTGTTG
CTCTATCTGACGCGCCATCTTCGACTACTTATCAAATCCCCCTTAGAAAC
TTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCGACCGACTCGGGC
GTCACCTGGACGCAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCGAT
CGCATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGCTTCACGC
ATGGCGCACGACACCACCATCCTGTATGCTGGTCGCGTCATAGTAAGATG
TATCGTCGAGAGTCTATATGTTGCTCTATCTGACGCGCTATCTTCGCCAT
CTCATCCAATCCCCCACAGAAACTTGCCGCCCTCGTATATGAAGGCTTCA
TCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACCAACAGT
ACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGATGGCACGGTACG
TGGTTGGATCCGGGGCTTCACGCATGGCGCACGACACCACCGTCCTTGAG
GCTGGTCGCATCATAGTAAGATGTATTCTCGAGAGTCTCTATGTGTTGCT
CTATCTGACGCGCCATCTTCGACTACTCATCCAATCCCCCACAGAAACTT
GCCGCCCTCGTGTATAACGGCTTCATCTATACATCCACCGACTCGGGCGT
TACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAGTGGTATCGGATGG
CATCCTCGTTGGATGGCACGGTACGTGGTTGGATCCGGGGCTTTGTCCAC
AGTGCACGATGGCAATGTCCTTGAGGCTGGTCGCGTCGTAGATGGGTGTA
TTCTCGAGAGTCTCTATGTGTTTCTCACAGATATCTGACGCGCCATCTTC
GACTACCCATCCACTCCCCCTTAGAAACTTGCCGCCGGGGTGTATAACGG
TTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGCAGCAAACAA
ACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCGGATGGCACG
GTACGTGGTTGGATCCCGGGCTTCACGCATGGCGCACGACACCACCATCC
TGTATGCTGGTCGCGTCGTAGTAAGATGTATCGTCGAGAGTCTCTATGTG
TTGCTCTATCTGACGCGCTATCTTCGCCATCCAATCCCCCACAGAAACTT
GCCGCCGCGGTAAATGATGGCTTCATCCATACGTCGACCGACTCGGGCGT
CACCTGGACGCCGCAAAGCGACAGTACCCAGCAAAGCTGGTATGCGATCG
CATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGCTTCACGCAT
GGCGCACAACACCACCGTCCTTGAGGCTGGTCGCATCATAGTAAGATGTA
TTCTCGAGAGTCTCTATGTGTTGCTCTATCTGACGCGCCATCTTCGACTA
CTCATCGAATCCCCCACAGAAACTTGCCGCCGTAGTGTATGATGGCTTCA
TACACACGTCCCCCTAG

Coding sequence (CDS) from alignment at chr13:130931..133747-

>NO13G00400.1 ID=NO13G00400.1|Name=NO13G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr13:130931..133747- (Nannochloropsis oceanica)
ATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCCGTCCGTT
CCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGGACAACGG
CCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCGCGTCTTT
CAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTGATGTCAC
AGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTACTGCGCTG
TACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGGCAACAAG
AAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGCCGACCCC
AGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGTGAGGGGC
AGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCGTTTGTCG
GCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTATTGACGG
CCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACGGAGTGCT
TCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTTCTTCAAC
TGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAATGCGACTT
GATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCGGGGACCA
GGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACCGATGCAG
AGCCCCACTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTACAGCCTC
CCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACGGCTTCAC
CCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGGACCGGGC
GTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCGAT
CACATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGCGCATGAAGGCT
TCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACAAAC
AGTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATGGCACGAA
ACTTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCGACCGACTCGG
GCGTCACCTGGACGCAGCAAACAAACAGTACCCAGCAACAGTGGGAGTCG
ATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCCTCGTATATGAAGG
CTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAACCA
ACAGTACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGATGGCACG
AAACTTGCCGCCCTCGTGTATAACGGCTTCATCTATACATCCACCGACTC
GGGCGTTACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAGTGGTATC
GGATGGCATCCTCGTTGGATGGCACGAAACTTGCCGCCGGGGTGTATAAC
GGTTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGCAGCAAAC
AAACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCGGATGGCA
CGAAACTTGCCGCCGCGGTAAATGATGGCTTCATCCATACGTCGACCGAC
TCGGGCGTCACCTGGACGCCGCAAAGCGACAGTACCCAGCAAAGCTGGTA
TGCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGTAGTGTATG
ATGGCTTCATACACACGTCCCCCTAG

Synonyms

Publications