NO13G00300.1, NO13G00300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00300.1
Unique Name	NO13G00300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2319
Alignment location	chr13:105194..108047 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:105194..108047 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO13G00300.1 vs.
Match: XP_002291620.1 (ras-related protein, partial [Thalassiosira pseudonana CCMP1335]; EED91727.1 ras-related protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 92.0 bits (227), Expect = 1.800e-15
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 0

Query:   13 EGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTA-GSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRC 104
            EGVGKSS++S FVS+ F E VP +LT V++P    L N  + +IDT  G   +      +R  DAI+LVY+ +++ET+ RL SHWLPLI+RC
Sbjct:    1 EGVGKSSIVSTFVSRHFSELVPGILTRVRLPPDPYLSNCTSTIIDTQEGDTSLSNALSPLRNVDAIVLVYDLDKMETFNRLESHWLPLIERC 92

The following BLAST results are available for this feature:

BLAST of NO13G00300.1 vs.

BLAST of NO13G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002291620.1	1.800e-15	48.91	ras-related protein, partial [Thalassiosira pseudo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00300	NO13G00300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00300.1	NO13G00300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00300.1.cds1	NO13G00300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00300.1.cds2	NO13G00300.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00300.1.cds3	NO13G00300.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:105194..108047-
coding sequence from alignment at chr13:105194..108047-

mRNA sequence

>NO13G00300.1 ID=NO13G00300.1|Name=NO13G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp
TGAATTAATTTACCTCTACGCCAGTTGAGAGAGACCTTCAGGGACCAGCT
ACATGTCTTATATACAGGTTTCGTAAGAAACTTTAAAACGATGTCTACGA
TGGATTATGTGTTCCCGCTGCTTCCATCCGTTTCGTTAGAGGGGAGGAAG
AGAAGGAAGGCAAAGAAGGACGAGGCAACGATGCATTCATCACGACGTTT
ACCAGAACATCAAAGCTCTCCCCTTCCCCCCTTCCCCCCTCTCCCTCCTC
GCACAAGGTAGCCATTTTCTCCGTTAGTTTCAGCACCGTCTTCCTCAGAC
TCTTGGGGGGTGCAAAGTTAATCGTTGTACTCATCCCTCCCTCCCTTCCC
TCCTCCTCCTTATCTCCCTCGCCTTCCCCTCCTCCTCCTTTCCCTTCTTT
TCCTTCTATTCCAAGCACCCGTATTCTCACTGCCTTCTTCACCTCCTCCT
TCAAGGCCTCCTCCTCCTCAGGCACCGCCAGGAGGGAGGAGTAGAAAAAA
CGGACGTCGCCCGTCCCGACGCTCTGAGTACCCGTGGATACGGTGACGAG
CACACGCCGTGGATGCCCCCCCCGCTCCTGCAGCGTTTTGGTCCCTGTAA
TAGTCGTACGGTTCAAAGTGTCGGACACATTAAAGGGAGGAGGGTCCGCG
GTGAGTAGAAAGGGGAGGGAAGGCAAGGGAGATGGGGATGCCGTTGGCCC
GTCCCCTCTTATTCTTCGTCCTGGCTCTCCGACGTCTGAGGGCATTCGTT
GTTGTTGACGTTCTTCATGTTGTTGATGTTGTTGACGTTGTTGATGCTGC
TGCTGCTGCCGTCCTTCCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTG
CGCGATGAGGGTTTCCATGGGCGTGGCTATCCGCTTGAGGACATGGATGA
GCTCGATCCTATAGAGGAGGAGGGAGGAAAATGGAGATGCAGGGATGTGG
GAGGGGGTATGAGGGAAGGAAAAGCCACCACCGGCATAGAGAAGACAGAG
ATGGATTAGAAAGAGATGCAGCTCTCCATACGGGGACGCAGCGCAAGGGA
TTACCCGGGTGGCTTGACTAAACGCGACCTGCACTTTAAGGGCGCTTCCT
CTGCGAGGATTTCATAAATGGCTTGTGCCGATGGAGCTCGACACTTGACC
GTGCATAGCATGACGTCCGCACACATAAAATCATGGAAGCTTTTGACCTC
CCTCCCCTCCCTCCCTCACTCCCTTCTCCCTGTACTCACTCTTGTTTGGC
TGTCAGCGCCAATGTTTCGAAGAGCCGCAAGAAAAGGGGGTCATCGAGGT
CGTATGTTAGGACACGGAGGTAGGCCATGACCCTGTGTAACCATGATAAG
TTTTAGCAGACATCGAAGGAGGAGCTGGCATGTAGAGTTTATCGGTGTTG
AAGCATCAACGAAGTCAGCGAAGGTAGTGCCTTTCCGGCAAGCAACAGGG
CCATGACACACACTGTGTCACACACTTTGGGCACACCCGCGGCACGTAGC
GCACACAGGAAAGGCCACAGACGACAAGCGCGTCGAATTGCACTTAAAAT
TGGCGTGGTGTGAACAGGGGAGCGAAAGCCACGCAAAGGTTCCTCTTCGA
CCGCCCTGATGTCTAGCGCATGCAGCCACGCGCGCCTTGGCCTTGGCCTC
ATTTAAACTTTATCTTACGCACAATACCCACTTAATACGGGGACTTGCTT
GCGTAAATTCTGCCTTTGAGATGGTGGCACATTTTTTGTGGTATGGCTCA
TCCGTTCTCACGCGAATCCTCTCTCCCTCCCTCCCTTACTTATTCGGACA
TCCCAACCGCAACGACACTAAAAGAGCATGAAAGACACTCTCCGCATAAT
CGTCCTGGGGGATGAGGGGGTGGGAAAGTCCTCGCTCATCTCGGCTTTCG
TCTCACAGTGCTTCCCGGAAAAGGTTCCCTCTGTCCTCACGCCCGTGCAA
ATCCCCGCCTCGGAGTCGTTGGAGAATGTGGCTACCGTAGTGATAGACAC
GGCGGGCTCAGCCCATGTCGATCAGCTTGCGGTCAAGATCAGGGAGGCTG
ACGCCATCATCCTCGTGTACAATTTCGAACGCATCGAGACCTACGAGCGT
CTCGCCTCTCACTGGCTCCCCCTCATCCAACGGTGCATGTCCTCCTCCTC
CTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCCCTTCCTCCTTCCCTTCCT
CCCTCGCGTCCTCCATATCCTTTTCGAGCGAGGGAGGGAGAGAGGGAAGA
GAGGGGGCAACCTTCTTTCCAAAACCAGTCGTGCTTGCACGGAACAAGGT
ACAGACAGATGGGCAGTGA

protein sequence of NO13G00300.1

>NO13G00300.1-protein ID=NO13G00300.1-protein|Name=NO13G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MKDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLEN
VATVVIDTAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLI
QRCMSSSSSSSSSSSSSFPSSFPSSLASSISFSSEGGREGREGATFFPKP
VVLARNKVQTDGQ*

mRNA from alignment at chr13:105194..108047-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00300.1 ID=NO13G00300.1|Name=NO13G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp|location=Sequence derived from alignment at chr13:105194..108047- (Nannochloropsis oceanica)
TGAATTAATTTACCTCTACGCCAGTTGAGAGAGACCTTCAGGGACCAGCT
ACATGTCTTATATACAGGTTTCGTAAGAAACTTTAAAACGATGTCTACGA
TGGATTATGTGTTCCCGCTGCTTCCATCCGTTTCGTTAGAGGGGAGGAAG
AGAAGGAAGGCAAAGAAGGACGAGGCAACGATGCATTCATCACGACGTTT
ACCAGAACATCAAAGCTCTCCCCTTCCCCCCTTCCCCCCTCTCCCTCCTC
GCACAAGGTAGCCATTTTCTCCGTTAGTTTCAGCACCGTCTTCCTCAGAC
TCTTGGGGGGTGCAAAGTTAATCGTTGTACTCATCCCTCCCTCCCTTCCC
TCCTCCTCCTTATCTCCCTCGCCTTCCCCTCCTCCTCCTTTCCCTTCTTT
TCCTTCTATTCCAAGCACCCGTATTCTCACTGCCTTCTTCACCTCCTCCT
TCAAGGCCTCCTCCTCCTCAGGCACCGCCAGGAGGGAGGAGTAGAAAAAA
CGGACGTCGCCCGTCCCGACGCTCTGAGTACCCGTGGATACGGTGACGAG
CACACGCCGTGGATGCCCCCCCCGCTCCTGCAGCGTTTTGGTCCCTGTAA
TAGTCGTACGGTTCAAAGTGTCGGACACATTAAAGGGAGGAGGGTCCGCG
GTGAGTAGAAAGGGGAGGGAAGGCAAGGGAGATGGGGATGCCGTTGGCCC
GTCCCCTCTTATTCTTCGTCCTGGCTCTCCGACGTCTGAGGGCATTCGTT
GTTGTTGACGTTCTTCATGTTGTTGATGTTGTTGACGTTGTTGATGCTGC
TGCTGCTGCCGTCCTTCCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTG
CGCGATGAGGGTTTCCATGGGCGTGGCTATCCGCTTGAGGACATGGATGA
GCTCGATCCTATAGAGGAGGAGGGAGGAAAATGGAGATGCAGGGATGTGG
GAGGGGGTATGAGGGAAGGAAAAGCCACCACCGGCATAGAGAAGACAGAG
ATGGATTAGAAAGAGATGCAGCTCTCCATACGGGGACGCAGCGCAAGGGA
TTACCCGGGTGGCTTGACTAAACGCGACCTGCACTTTAAGGGCGCTTCCT
CTGCGAGGATTTCATAAATGGCTTGTGCCGATGGAGCTCGACACTTGACC
GTGCATAGCATGACGTCCGCACACATAAAATCATGGAAGCTTTTGACCTC
CCTCCCCTCCCTCCCTCACTCCCTTCTCCCTGTACTCACTCTTGTTTGGC
TGTCAGCGCCAATGTTTCGAAGAGCCGCAAGAAAAGGGGGTCATCGAGGT
CGTATGTTAGGACACGGAGGTAGGCCATGACCCTGTGTAACCATGATAAG
TTTTAGCAGACATCGAAGGAGGAGCTGGCATGTAGAGTTTATCGGTGTTG
AAGCATCAACGAAGTCAGCGAAGGTAGTGCCTTTCCGGCAAGCAACAGGG
CCATGACACACACTGTGTCACACACTTTGGGCACACCCGCGGCACGTAGC
GCACACAGGAAAGGCCACAGACGACAAGCGCGTCGAATTGCACTTAAAAT
TGGCGTGGTGTGAACAGGGGAGCGAAAGCCACGCAAAGGTTCCTCTTCGA
CCGCCCTGATGTCTAGCGCATGCAGCCACGCGCGCCTTGGCCTTGGCCTC
ATTTAAACTTTATCTTACGCACAATACCCACTTAATACGGGGACTTGCTT
GCGTAAATTCTGCCTTTGAGATGGTGGCACATTTTTTGTGGTATGGCTCA
TCCGTTCTCACGCGAATCCTCTCTCCCTCCCTCCCTTACTTATTCGGACA
TCCCAACCGCAACGACACTAAAAGAGCATGAAAGACACTCTCCGCATAAT
CGTCCTGGGGGATGAGGGGGTGGGAAAGTCCTCGCTCATCTCGGCTTTCG
TCTCACAGTGCTTCCCGGAAAAGGTGAGAGGGGGAAAGGAGGGAGGTTGG
AAGGGATTTTATGTATGCGGGAGGGGAAACAAAAAACGACAACCACAACA
TGATAAGGGACAGGATGGAAGGAGAGACCGAGAAATACAAGAAACAGGGG
GTCCTGTACAGTGCTAGACGGAGAAAAAAAATCGTGGTTAATGTGCAGGT
ATAAATCGAAAGTAATCCAAAACCCTCCTTCATTCCCTCCCTCCCTCCTT
CCCTCCCTCCTTCCCCCCCAGGTTCCCTCTGTCCTCACGCCCGTGCAAAT
CCCCGCCTCGGAGTCGTTGGAGAATGTGGCTACCGTAGTGATAGACACGG
CGGGCTCAGCCCATGTCGATCAGCTTGCGGTCAAGATCAGGGTGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAAGGGCTCGCG
CACTGCCGTAGCGCTTCGTGGTAACCCACCACCTTAAGACTAGAACATGT
ACAGCTTACCGACGAAGACATATGGAGCGTCTGAGCGCCCATACAGCACC
CTTCATCTCCCTCACTCCTGACCCTCTTTTCTGTCCTTTCCATCCTTTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCCCA
CGACAACCTCCCGACATCCCCACCAAAGGAGGCTGACGCCATCATCCTCG
TGTACAATTTCGAACGCATCGAGACCTACGAGCGTCTCGCCTCTCACTGG
CTCCCCCTCATCCAACGGTGCATGTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTCCTCCTTCCCTTCCTCCTTCCCTTCCTCCCTCGCGTCCTCCA
TATCCTTTTCGAGCGAGGGAGGGAGAGAGGGAAGAGAGGGGGCAACCTTC
TTTCCAAAACCAGTCGTGCTTGCACGGAACAAGGTACAGACAGATGGGCA
GTGA

Coding sequence (CDS) from alignment at chr13:105194..108047-

>NO13G00300.1 ID=NO13G00300.1|Name=NO13G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr13:105194..108047- (Nannochloropsis oceanica)
ATGAAAGACACTCTCCGCATAATCGTCCTGGGGGATGAGGGGGTGGGAAA
GTCCTCGCTCATCTCGGCTTTCGTCTCACAGTGCTTCCCGGAAAAGGTTC
CCTCTGTCCTCACGCCCGTGCAAATCCCCGCCTCGGAGTCGTTGGAGAAT
GTGGCTACCGTAGTGATAGACACGGCGGGCTCAGCCCATGTCGATCAGCT
TGCGGTCAAGATCAGGGAGGCTGACGCCATCATCCTCGTGTACAATTTCG
AACGCATCGAGACCTACGAGCGTCTCGCCTCTCACTGGCTCCCCCTCATC
CAACGGTGCATGTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTC
CTTCCCTTCCTCCTTCCCTTCCTCCCTCGCGTCCTCCATATCCTTTTCGA
GCGAGGGAGGGAGAGAGGGAAGAGAGGGGGCAACCTTCTTTCCAAAACCA
GTCGTGCTTGCACGGAACAAGGTACAGACAGATGGGCAGTGA

Synonyms

Publications