NO13G00300, NO13G00300 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00300
Unique Name	NO13G00300
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2854
Alignment location	chr13:105194..108047 -

Link to JBrowse

Properties


Property Name	Value
Description	MIRO-related GTP-ase 2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:105194..108047 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR020860	MIRO_dom
IPR001806	Small_GTPase

Homology

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_002291620.1 (ras-related protein, partial [Thalassiosira pseudonana CCMP1335] >EED91727.1 ras-related protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 92.0 bits (227), Expect = 1.800e-15
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 0

Query:   13 EGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDT-AGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRC 104
            EGVGKSS++S FVS+ F E VP +LT V++P    L N  + +IDT  G   +      +R  DAI+LVY+ +++ET+ RL SHWLPLI+RC
Sbjct:    1 EGVGKSSIVSTFVSRHFSELVPGILTRVRLPPDPYLSNCTSTIIDTQEGDTSLSNALSPLRNVDAIVLVYDLDKMETFNRLESHWLPLIERC 92

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: OEU20080.1 (hypothetical protein FRACYDRAFT_274669 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 86.7 bits (213), Expect = 7.500e-14
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTAGSA----------------HVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRC 104
            + ++ ++VLGDEGVGKSSLIS FVS+ F E VP ++T V++P       + T+V    G A                H +     I   D+IIL+Y+ +R ET+ RL +HWLPLI+RC
Sbjct:   29 RTSITMLVLGDEGVGKSSLISTFVSRHFSEVVPGIMTRVRLPPDPENSCITTIVDSQGGDAALISAVANMRRNGNPHHSEHGMGGIENVDSIILIYDLDRDETFFRLENHWLPLIERC 146

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_012282733.1 (mitochondrial Rho GTPase isoform X1 [Orussus abietinus])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVID-TAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRCMSS 107
            K ++RI+++GD GVGK+SLI + VS+ + E VPS    + IPA  + E V T ++D +A     DQLA +I++A  I +VY+ E  +T +R AS+W+PLI++C S+
Sbjct:   15 KRSVRILLVGDRGVGKTSLILSLVSEEYAEDVPSKAEEITIPADVTPEQVPTHIVDYSAAEQTDDQLAEEIQKAHVICVVYSVEDEDTLDRAASYWMPLIRKCSSN 120

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_012282734.1 (mitochondrial Rho GTPase isoform X2 [Orussus abietinus])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVID-TAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRCMSS 107
            K ++RI+++GD GVGK+SLI + VS+ + E VPS    + IPA  + E V T ++D +A     DQLA +I++A  I +VY+ E  +T +R AS+W+PLI++C S+
Sbjct:   15 KRSVRILLVGDRGVGKTSLILSLVSEEYAEDVPSKAEEITIPADVTPEQVPTHIVDYSAAEQTDDQLAEEIQKAHVICVVYSVEDEDTLDRAASYWMPLIRKCSSN 120

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_012282735.1 (mitochondrial Rho GTPase isoform X3 [Orussus abietinus])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVID-TAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRCMSS 107
            K ++RI+++GD GVGK+SLI + VS+ + E VPS    + IPA  + E V T ++D +A     DQLA +I++A  I +VY+ E  +T +R AS+W+PLI++C S+
Sbjct:   15 KRSVRILLVGDRGVGKTSLILSLVSEEYAEDVPSKAEEITIPADVTPEQVPTHIVDYSAAEQTDDQLAEEIQKAHVICVVYSVEDEDTLDRAASYWMPLIRKCSSN 120

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_012282736.1 (mitochondrial Rho GTPase isoform X4 [Orussus abietinus])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVID-TAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRCMSS 107
            K ++RI+++GD GVGK+SLI + VS+ + E VPS    + IPA  + E V T ++D +A     DQLA +I++A  I +VY+ E  +T +R AS+W+PLI++C S+
Sbjct:   15 KRSVRILLVGDRGVGKTSLILSLVSEEYAEDVPSKAEEITIPADVTPEQVPTHIVDYSAAEQTDDQLAEEIQKAHVICVVYSVEDEDTLDRAASYWMPLIRKCSSN 120

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_012528503.1 (PREDICTED: mitochondrial Rho GTPase isoform X2 [Monomorium pharaonis])

HSP 1 Score: 84.7 bits (208), Expect = 2.900e-13
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = 0

Query:    5 LRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQRCMS 106
            +RI+++G+ GVGK+SLI + VS+ + E+VPS    + IPA  + E V T ++D +     DQLA +I++A  I +VY+ +  +T +R AS+WLPLI+RC S
Sbjct:   12 VRILLIGERGVGKTSLILSLVSEEYAEEVPSKAEEITIPADVTPEQVPTHIVDYSVEQTEDQLAEEIQKAHVICVVYSVDDEDTLDRAASYWLPLIRRCSS 112

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_017230572.1 (PREDICTED: mitochondrial Rho GTPase 1 [Daucus carota subsp. sativus] >KZN10081.1 hypothetical protein DCAR_002737 [Daucus carota subsp. sativus])

HSP 1 Score: 84.7 bits (208), Expect = 2.900e-13
Identity = 41/103 (39.81%), Postives = 70/103 (67.96%), Query Frame = 0

Query:    1 MKDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTAGS-AHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQR 103
            ++  +R++V+GD G GKSSLISA  S+ FPE VPSVL P ++PA    + V  +++DT+ S  +  ++A +++ ADA+++ Y  ++ ET  RL++ WL  ++R
Sbjct:   10 LRTAVRVVVIGDRGTGKSSLISAAASESFPENVPSVLPPTRLPADYYPDGVPVIIVDTSSSIQNKSRVAEELQRADAVVITYACDQRETLTRLSTFWLLELRR 112

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: XP_008790947.1 (PREDICTED: mitochondrial Rho GTPase 1 [Phoenix dactylifera])

HSP 1 Score: 83.6 bits (205), Expect = 6.400e-13
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTAGS-AHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQR 103
            + ++R++V+GD G GKSSLI +  ++ FPE VP VL P ++PA    + V T +IDT+ S  +  +L  + + ADAI+L Y  +R  T +RL+++WLP ++R
Sbjct:   11 RTSVRVVVIGDPGTGKSSLIVSVATETFPENVPDVLPPTRLPADYYPDRVPTTIIDTSSSPENKSKLISECQMADAIVLTYACDRPSTLDRLSTYWLPELRR 112

[Close]

BLAST of NO13G00300 vs. NCBI_GenBank
Match: KMZ69882.1 (Mitochondrial Rho GTPase [Zostera marina])

HSP 1 Score: 83.6 bits (205), Expect = 6.400e-13
Identity = 42/102 (41.18%), Postives = 69/102 (67.65%), Query Frame = 0

Query:    2 KDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLENVATVVIDTAGSA-HVDQLAVKIREADAIILVYNFERIETYERLASHWLPLIQR 103
            K T+RI+V GD+G GKSSLI +  ++ FPE V  V+ P ++P+    + V   +IDT+ S  H ++L+ ++++AD I+L Y  +R  T ER++S+WLP ++R
Sbjct:   13 KKTVRIVVAGDQGTGKSSLIISVATESFPEHVQPVVPPSRLPSDFYPDRVPITIIDTSSSTEHRNKLSAELKQADIIVLTYACDRPTTLERVSSYWLPELRR 114

The following BLAST results are available for this feature:

BLAST of NO13G00300 vs. NCBI_GenBank

BLAST of NO13G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_002291620.1	1.800e-15	48.91	ras-related protein, partial [Thalassiosira pseudo...	[more]
OEU20080.1	7.500e-14	40.68	hypothetical protein FRACYDRAFT_274669 [Fragilario...	[more]
XP_012282733.1	2.200e-13	43.40	mitochondrial Rho GTPase isoform X1 [Orussus abiet...	[more]
XP_012282734.1	2.200e-13	43.40	mitochondrial Rho GTPase isoform X2 [Orussus abiet...	[more]
XP_012282735.1	2.200e-13	43.40	mitochondrial Rho GTPase isoform X3 [Orussus abiet...	[more]
XP_012282736.1	2.200e-13	43.40	mitochondrial Rho GTPase isoform X4 [Orussus abiet...	[more]
XP_012528503.1	2.900e-13	43.56	PREDICTED: mitochondrial Rho GTPase isoform X2 [Mo...	[more]
XP_017230572.1	2.900e-13	39.81	PREDICTED: mitochondrial Rho GTPase 1 [Daucus caro...	[more]
XP_008790947.1	6.400e-13	41.18	PREDICTED: mitochondrial Rho GTPase 1 [Phoenix dac...	[more]
KMZ69882.1	6.400e-13	41.18	Mitochondrial Rho GTPase [Zostera marina]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL134	nonsL134	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL133	nonsL133	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR026	ncniR026	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR057	ngnoR057	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001873	NSK001873	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO13G00300.1	NO13G00300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|118546	gene_6985	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO13G00300.1	NO13G00300.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO13G00300 ID=NO13G00300|Name=NO13G00300|organism=Nannochloropsis oceanica|type=gene|length=2854bp
TGAATTAATTTACCTCTACGCCAGTTGAGAGAGACCTTCAGGGACCAGCT
ACATGTCTTATATACAGGTTTCGTAAGAAACTTTAAAACGATGTCTACGA
TGGATTATGTGTTCCCGCTGCTTCCATCCGTTTCGTTAGAGGGGAGGAAG
AGAAGGAAGGCAAAGAAGGACGAGGCAACGATGCATTCATCACGACGTTT
ACCAGAACATCAAAGCTCTCCCCTTCCCCCCTTCCCCCCTCTCCCTCCTC
GCACAAGGTAGCCATTTTCTCCGTTAGTTTCAGCACCGTCTTCCTCAGAC
TCTTGGGGGGTGCAAAGTTAATCGTTGTACTCATCCCTCCCTCCCTTCCC
TCCTCCTCCTTATCTCCCTCGCCTTCCCCTCCTCCTCCTTTCCCTTCTTT
TCCTTCTATTCCAAGCACCCGTATTCTCACTGCCTTCTTCACCTCCTCCT
TCAAGGCCTCCTCCTCCTCAGGCACCGCCAGGAGGGAGGAGTAGAAAAAA
CGGACGTCGCCCGTCCCGACGCTCTGAGTACCCGTGGATACGGTGACGAG
CACACGCCGTGGATGCCCCCCCCGCTCCTGCAGCGTTTTGGTCCCTGTAA
TAGTCGTACGGTTCAAAGTGTCGGACACATTAAAGGGAGGAGGGTCCGCG
GTGAGTAGAAAGGGGAGGGAAGGCAAGGGAGATGGGGATGCCGTTGGCCC
GTCCCCTCTTATTCTTCGTCCTGGCTCTCCGACGTCTGAGGGCATTCGTT
GTTGTTGACGTTCTTCATGTTGTTGATGTTGTTGACGTTGTTGATGCTGC
TGCTGCTGCCGTCCTTCCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTG
CGCGATGAGGGTTTCCATGGGCGTGGCTATCCGCTTGAGGACATGGATGA
GCTCGATCCTATAGAGGAGGAGGGAGGAAAATGGAGATGCAGGGATGTGG
GAGGGGGTATGAGGGAAGGAAAAGCCACCACCGGCATAGAGAAGACAGAG
ATGGATTAGAAAGAGATGCAGCTCTCCATACGGGGACGCAGCGCAAGGGA
TTACCCGGGTGGCTTGACTAAACGCGACCTGCACTTTAAGGGCGCTTCCT
CTGCGAGGATTTCATAAATGGCTTGTGCCGATGGAGCTCGACACTTGACC
GTGCATAGCATGACGTCCGCACACATAAAATCATGGAAGCTTTTGACCTC
CCTCCCCTCCCTCCCTCACTCCCTTCTCCCTGTACTCACTCTTGTTTGGC
TGTCAGCGCCAATGTTTCGAAGAGCCGCAAGAAAAGGGGGTCATCGAGGT
CGTATGTTAGGACACGGAGGTAGGCCATGACCCTGTGTAACCATGATAAG
TTTTAGCAGACATCGAAGGAGGAGCTGGCATGTAGAGTTTATCGGTGTTG
AAGCATCAACGAAGTCAGCGAAGGTAGTGCCTTTCCGGCAAGCAACAGGG
CCATGACACACACTGTGTCACACACTTTGGGCACACCCGCGGCACGTAGC
GCACACAGGAAAGGCCACAGACGACAAGCGCGTCGAATTGCACTTAAAAT
TGGCGTGGTGTGAACAGGGGAGCGAAAGCCACGCAAAGGTTCCTCTTCGA
CCGCCCTGATGTCTAGCGCATGCAGCCACGCGCGCCTTGGCCTTGGCCTC
ATTTAAACTTTATCTTACGCACAATACCCACTTAATACGGGGACTTGCTT
GCGTAAATTCTGCCTTTGAGATGGTGGCACATTTTTTGTGGTATGGCTCA
TCCGTTCTCACGCGAATCCTCTCTCCCTCCCTCCCTTACTTATTCGGACA
TCCCAACCGCAACGACACTAAAAGAGCATGAAAGACACTCTCCGCATAAT
CGTCCTGGGGGATGAGGGGGTGGGAAAGTCCTCGCTCATCTCGGCTTTCG
TCTCACAGTGCTTCCCGGAAAAGgtgagagggggaaaggagggaggttgg
aagggattttatgtatgcgggaggggaaacaaaaaacgacaaccacaaca
tgataagggacaggatggaaggagagaccgagaaatacaagaaacagggg
gtcctgtacagtgctagacggagaaaaaaaatcgtggttaatgtgcaggt
ataaatcgaaagtaatccaaaaccctccttcattccctccctccctcctt
ccctccctccttcccccccagGTTCCCTCTGTCCTCACGCCCGTGCAAAT
CCCCGCCTCGGAGTCGTTGGAGAATGTGGCTACCGTAGTGATAGACACGG
CGGGCTCAGCCCATGTCGATCAGCTTGCGGTCAAGATCAGGgtgaggagg
gagggagggagggagggagggagggagggagggagggagaagggctcgcg
cactgccgtagcgcttcgtggtaacccaccaccttaagactagaacatgt
acagcttaccgacgaagacatatggagcgtctgagcgcccatacagcacc
cttcatctccctcactcctgaccctcttttctgtcctttccatcctttct
ccctccctccctccctccctccctcccgccctccctccctccctccccca
cgacaacctcccgacatccccaccaaagGAGGCTGACGCCATCATCCTCG
TGTACAATTTCGAACGCATCGAGACCTACGAGCGTCTCGCCTCTCACTGG
CTCCCCCTCATCCAACGGTGCATGTCCTCCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTCCTCCTTCCCTTCCTCCTTCCCTTCCTCCCTCGCGTCCTCCA
TATCCTTTTCGAGCGAGGGAGGGAGAGAGGGAAGAGAGGGGGCAACCTTC
TTTCCAAAACCAGTCGTGCTTGCACGGAACAAGGTACAGACAGATGGGCA
GTGA

protein sequence of NO13G00300.1

>NO13G00300.1-protein ID=NO13G00300.1-protein|Name=NO13G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MKDTLRIIVLGDEGVGKSSLISAFVSQCFPEKVPSVLTPVQIPASESLEN
VATVVIDTAGSAHVDQLAVKIREADAIILVYNFERIETYERLASHWLPLI
QRCMSSSSSSSSSSSSSFPSSFPSSLASSISFSSEGGREGREGATFFPKP
VVLARNKVQTDGQ*

Synonyms

Publications