NO13G00030, NO13G00030 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00030 vs. NCBI_GenBank
Match: EWM22861.1 (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 333.6 bits (854), Expect = 1.200e-87 Identity = 159/190 (83.68%), Postives = 171/190 (90.00%), Query Frame = 0 Query: 280 RKVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPRPPREGSFG 470 RKVFVQGLPW+A+EEEVR FF CG MTSVELP+KDGR+SGTA+IVF EE GV KAVAMNE+ FGDSGRWVRVRK+EP GK+GGK GMGF+RPPSEKPEGCMSVFIGNLSW+IDEETIR F CGEVT VRFATDRETGEFRGFGHVDFADE+APEAAV +AGTPVMGREIRVDYAQPRPPREG FG Sbjct: 275 RKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGK-GMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFG 463
BLAST of NO13G00030 vs. NCBI_GenBank
Match: XP_002907539.1 (nucleolin, putative [Phytophthora infestans T30-4] >EEY64103.1 nucleolin, putative [Phytophthora infestans T30-4]) HSP 1 Score: 200.7 bits (509), Expect = 1.200e-47 Identity = 98/181 (54.14%), Postives = 128/181 (70.72%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKPEGC SVFIGNLSW +DE T+RETFG+CGE+ R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 250 EIFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFATSEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPEGCTSVFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAVKLAGSYVNGRAIRVNYAKSR 414
BLAST of NO13G00030 vs. NCBI_GenBank
Match: CBN78824.1 (Protein for assembly of pre-ribosomal particles containing 18S rRNA [Ectocarpus siliculosus]) HSP 1 Score: 199.5 bits (506), Expect = 2.700e-47 Identity = 98/191 (51.31%), Postives = 131/191 (68.59%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMK-DGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRV-RKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPRPPREGSFG 470 K++++GLPW S+++V++FF +CGK+ +VE P DGR+SGTA++ F KA+ ++ Q G GRW+++ FE + G P KP GC +VFIGNLSWSIDE+TIR+TFG+CG++ VRFA DRETGEFRGFGHV+F D +AA+ LA + VMGR IRVDYA PR PR+ SFG Sbjct: 283 KIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELG--GRWLKIMMSFEKPDHARNG---------EPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFG 462
BLAST of NO13G00030 vs. NCBI_GenBank
Match: POM80189.1 (Nucleolin [Phytophthora palmivora var. palmivora]) HSP 1 Score: 198.4 bits (503), Expect = 6.000e-47 Identity = 97/181 (53.59%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A++EEV+E F+ CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKPEGC SVFIGNL+W +DE TIRETFG+CGE+ R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 281 EIFIAGLPWSATDEEVKEHFSGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPEGCTSVFIGNLAWDVDENTIRETFGECGEILSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 445
BLAST of NO13G00030 vs. NCBI_GenBank
Match: XP_008897154.1 (hypothetical protein PPTG_05370 [Phytophthora parasitica INRA-310] >ETI34194.1 hypothetical protein F443_19266 [Phytophthora parasitica P1569] >ETM34433.1 hypothetical protein L914_18506 [Phytophthora parasitica] >ETN17609.1 hypothetical protein PPTG_05370 [Phytophthora parasitica INRA-310]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 191 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 355
BLAST of NO13G00030 vs. NCBI_GenBank
Match: XP_008897155.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI34195.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK74564.1 hypothetical protein, variant [Phytophthora parasitica] >ETL27985.1 hypothetical protein, variant [Phytophthora parasitica] >ETM34434.1 hypothetical protein, variant [Phytophthora parasitica] >ETN17610.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETP32296.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 131 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295
BLAST of NO13G00030 vs. NCBI_GenBank
Match: ETK74563.1 (hypothetical protein L915_18691 [Phytophthora parasitica]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 286 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450
BLAST of NO13G00030 vs. NCBI_GenBank
Match: ETL27984.1 (hypothetical protein L916_18596 [Phytophthora parasitica]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 221 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 385
BLAST of NO13G00030 vs. NCBI_GenBank
Match: ETL81231.1 (hypothetical protein L917_18419 [Phytophthora parasitica]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 286 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450
BLAST of NO13G00030 vs. NCBI_GenBank
Match: ETL81232.1 (hypothetical protein, variant 1 [Phytophthora parasitica]) HSP 1 Score: 197.6 bits (501), Expect = 1.000e-46 Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 0 Query: 281 KVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPR 462 ++F+ GLPW+A+E+EV+E FA CG++T+ +P+++GR+SGTAF+ FA + A+AM+ Q FG GRW+++R E K+ M EKP+GC S+FIGNL+W +DE T+RETF +CGE+T R ATDRETGEFRGFGHVDFA A + AV LAG+ V GR IRV+YA+ R Sbjct: 256 EIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE---------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 420 The following BLAST results are available for this feature:
BLAST of NO13G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00030 ID=NO13G00030|Name=NO13G00030|organism=Nannochloropsis oceanica|type=gene|length=1677bpback to top protein sequence of NO13G00030.1 >NO13G00030.1-protein ID=NO13G00030.1-protein|Name=NO13G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bpback to top Synonyms
Publications
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