NO12G03700.1, NO12G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03700.1
Unique NameNO12G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length273
Alignment locationchr12:1024740..1025337 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1024740..1025337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03700.1 vs.
Match: OQR93434.1 (glutamate-cysteine ligase catalytic subunit [Achlya hypogyna])

HSP 1 Score: 73.2 bits (178), Expect = 4.800e-10
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGLKEEE 74
            MGLL VG PL+WEDALP L +VR  G+ QFL TY  ++ +    LKWG+E+E GIF++ PE +     L+  E
Sbjct:    1 MGLLVVGTPLRWEDALPWLHHVRRNGIQQFLETYHRVKDIRGDVLKWGDELEYGIFELDPETKTARLSLRGSE 73
The following BLAST results are available for this feature:
BLAST of NO12G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR93434.14.800e-1049.32glutamate-cysteine ligase catalytic subunit [Achly... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03700NO12G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03700.1NO12G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03700.1.cds1NO12G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03700.1.cds2NO12G03700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03700.1.cds3NO12G03700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03700.1 ID=NO12G03700.1|Name=NO12G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=273bp
ATGGGCCTGCTCAAGGTGGGCCAACCCCTCAAGTGGGAAGACGCCTTGCC
CCACCTCCAATACGTGCGAGAGCAGGGGGTTCTCCAGTTTCTGGCCACCT
ACGAGGCGTTACAGACCTTGGTCAAACCCGAGTTAAAGTGGGGCGAGGAG
ATGGAAATCGGCATTTTTAAGATCGTTCCAGAAAAGGAAGGAAAAGAGGA
AGGTCTAAAGGAGGAGGAGGAGAAAGGGGGGGGGGAGGGAAGGAGGGAGG
CAGGCGAATCGTGCTTTCGTTGA
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protein sequence of NO12G03700.1

>NO12G03700.1-protein ID=NO12G03700.1-protein|Name=NO12G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEE
MEIGIFKIVPEKEGKEEGLKEEEEKGGGEGRREAGESCFR*
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mRNA from alignment at chr12:1024740..1025337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03700.1 ID=NO12G03700.1|Name=NO12G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=598bp|location=Sequence derived from alignment at chr12:1024740..1025337- (Nannochloropsis oceanica)
ATGGGCCTGCTCAAGGTACGTGTTCCTCCCTCCTCTGTTCTTGTATGACC
TCGCCCTTTCACTCCTTAAAGTCCTAATTCTCAGTTGGTGTGTCTCCTCT
CTGGGATATAAAGAGTCGTCGTCCGTGAAATTCTGCTTCCACCACACGTC
CTGACCCTCTTCCCTCCTTCCCCTGATAGGTGGGCCAACCCCTCAAGTGG
GAAGACGCCTTGCCCCACCTCCAATACGTGCGAGAGCAGGGGGTTCTCCA
GTTTCTGGCCACCTACGAGGCGTTACAGACCTTGGTCAAACCCGAGTTAA
AGTGGGGTAGGTAGTCAAGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAG
GAGATCACAATCCAGGAAGGAGGGAAGGAGGGATTGAGGAAAGGAGGAGC
AGTTCCTAGTTCTTATATGAGGTCTGCTATCGCCATCTCATTCTCGGTTC
CACAATAACAATGGCAGGCGAGGAGATGGAAATCGGCATTTTTAAGATCG
TTCCAGAAAAGGAAGGAAAAGAGGAAGGTCTAAAGGAGGAGGAGGAGAAA
GGGGGGGGGGAGGGAAGGAGGGAGGCAGGCGAATCGTGCTTTCGTTGA
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Coding sequence (CDS) from alignment at chr12:1024740..1025337-

>NO12G03700.1 ID=NO12G03700.1|Name=NO12G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at chr12:1024740..1025337- (Nannochloropsis oceanica)
ATGGGCCTGCTCAAGGTGGGCCAACCCCTCAAGTGGGAAGACGCCTTGCC
CCACCTCCAATACGTGCGAGAGCAGGGGGTTCTCCAGTTTCTGGCCACCT
ACGAGGCGTTACAGACCTTGGTCAAACCCGAGTTAAAGTGGGGCGAGGAG
ATGGAAATCGGCATTTTTAAGATCGTTCCAGAAAAGGAAGGAAAAGAGGA
AGGTCTAAAGGAGGAGGAGGAGAAAGGGGGGGGGGAGGGAAGGAGGGAGG
CAGGCGAATCGTGCTTTCGTTGA
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Synonyms
Publications