NO12G03700, NO12G03700 (gene) Nannochloropsis oceanica

Overview
NameNO12G03700
Unique NameNO12G03700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length598
Alignment locationchr12:1024740..1025337 -

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Properties
Property NameValue
DescriptionGlutamate--cysteine ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1024740..1025337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006750glutathione biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004357glutamate-cysteine ligase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR004308GCS
Homology
BLAST of NO12G03700 vs. NCBI_GenBank
Match: OQR93434.1 (glutamate-cysteine ligase catalytic subunit [Achlya hypogyna])

HSP 1 Score: 73.2 bits (178), Expect = 4.800e-10
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGLKEEE 74
            MGLL VG PL+WEDALP L +VR  G+ QFL TY  ++ +    LKWG+E+E GIF++ PE +     L+  E
Sbjct:    1 MGLLVVGTPLRWEDALPWLHHVRRNGIQQFLETYHRVKDIRGDVLKWGDELEYGIFELDPETKTARLSLRGSE 73          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: XP_009039893.1 (hypothetical protein AURANDRAFT_30964 [Aureococcus anophagefferens] >EGB05512.1 hypothetical protein AURANDRAFT_30964 [Aureococcus anophagefferens])

HSP 1 Score: 71.2 bits (173), Expect = 1.800e-9
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKI 59
            MG+L VG+PL WE+ALPHL+YVR+ GVLQF+  Y   + + K  L +G+E+E G+F +
Sbjct:    1 MGVLTVGRPLSWEEALPHLRYVRDHGVLQFINHYRKYEHITKDALYYGDEIEYGLFAL 58          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: CBJ30287.1 (Glutamate cysteine ligase [Ectocarpus siliculosus])

HSP 1 Score: 68.9 bits (167), Expect = 9.000e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    2 GLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKI 59
            GLL+VG P+ W  A+PHL YVR+ GV QF++ Y  ++ +   ELKWG+E+E  I K+
Sbjct:   28 GLLRVGTPMPWGQAMPHLGYVRDHGVKQFVSRYRKVEGIENDELKWGDELEYAILKV 84          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: OEU14148.1 (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9 bits (167), Expect = 9.000e-9
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGLKEEE 74
            MGLLKVG P  W+D+   L+Y+R+ GV QF++TY  ++ L   EL WG+E+E GIF I PE +     L+ +E
Sbjct:    1 MGLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKE 73          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: OEU14149.1 (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9 bits (167), Expect = 9.000e-9
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGLKEEE 74
            MGLLKVG P  W+D+   L+Y+R+ GV QF++TY  ++ L   EL WG+E+E GIF I PE +     L+ +E
Sbjct:   42 MGLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKE 114          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: EWM21684.1 (glutamate-cysteine ligase, partial [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    2 GLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKI 59
            GLLKVG+PL W  +LPHL+ VR  GV QFL  Y  L+ + + +L WGEE+E GI K+
Sbjct:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKV 126          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: OWZ02824.1 (Glutamate-cysteine ligase catalytic subunit [Phytophthora megakarya])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIF 57
            MGLL  G PL W DAL  LQ+VR QG+ QFL TY  ++ +   ELKWG+E+E G+F
Sbjct:    1 MGLLVEGSPLDWPDALEWLQHVRTQGIDQFLHTYNRVKDIEGDELKWGDELEYGVF 56          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: XP_009537024.1 (hypothetical protein PHYSODRAFT_348222 [Phytophthora sojae] >EGZ07458.1 hypothetical protein PHYSODRAFT_348222 [Phytophthora sojae])

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-8
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGL 70
            MGLL  G PL W DAL  LQ+VR QG+ QFL TY  ++ +   ELKWG+E+E G+F++  +K+ K   L
Sbjct:    1 MGLLVEGSPLDWPDALEWLQHVRTQGIDQFLHTYRRVKDIEGDELKWGDELEYGVFQM--DKDSKRARL 67          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: ETI53399.1 (hypothetical protein F443_03644 [Phytophthora parasitica P1569])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGL 70
            MGLL  G PL W DAL  LQ+VR QG+ QFL TY  ++ +   ELKWG+E+E G+F +  +KE K   L
Sbjct:    1 MGLLVEGSPLDWPDALEWLQHVRTQGIDQFLHTYNRVKDIEGDELKWGDELEYGVFHM--DKETKRARL 67          
BLAST of NO12G03700 vs. NCBI_GenBank
Match: ETK93237.1 (hypothetical protein L915_03537, partial [Phytophthora parasitica] >ETL99788.1 hypothetical protein L917_03404, partial [Phytophthora parasitica] >ETP23178.1 hypothetical protein F441_03637, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 66.6 bits (161), Expect = 4.500e-8
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    1 MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEEMEIGIFKIVPEKEGKEEGL 70
            MGLL  G PL W DAL  LQ+VR QG+ QFL TY  ++ +   ELKWG+E+E G+F +  +KE K   L
Sbjct:   43 MGLLVEGSPLDWPDALEWLQHVRTQGIDQFLHTYNRVKDIEGDELKWGDELEYGVFHM--DKETKRARL 109          
The following BLAST results are available for this feature:
BLAST of NO12G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR93434.14.800e-1049.32glutamate-cysteine ligase catalytic subunit [Achly... [more]
XP_009039893.11.800e-951.72hypothetical protein AURANDRAFT_30964 [Aureococcus... [more]
CBJ30287.19.000e-949.12Glutamate cysteine ligase [Ectocarpus siliculosus][more]
OEU14148.19.000e-946.58gamma glutamylcysteine synthetase [Fragilariopsis ... [more]
OEU14149.19.000e-946.58gamma glutamylcysteine synthetase [Fragilariopsis ... [more]
EWM21684.12.000e-854.39glutamate-cysteine ligase, partial [Nannochloropsi... [more]
OWZ02824.12.000e-855.36Glutamate-cysteine ligase catalytic subunit [Phyto... [more]
XP_009537024.13.400e-849.28hypothetical protein PHYSODRAFT_348222 [Phytophtho... [more]
ETI53399.14.500e-850.72hypothetical protein F443_03644 [Phytophthora para... [more]
ETK93237.14.500e-850.72hypothetical protein L915_03537, partial [Phytopht... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03700.1NO12G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03700.1NO12G03700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03700 ID=NO12G03700|Name=NO12G03700|organism=Nannochloropsis oceanica|type=gene|length=598bp
ATGGGCCTGCTCAAGgtacgtgttcctccctcctctgttcttgtatgacc
tcgccctttcactccttaaagtcctaattctcagttggtgtgtctcctct
ctgggatataaagagtcgtcgtccgtgaaattctgcttccaccacacgtc
ctgaccctcttccctccttcccctgatagGTGGGCCAACCCCTCAAGTGG
GAAGACGCCTTGCCCCACCTCCAATACGTGCGAGAGCAGGGGGTTCTCCA
GTTTCTGGCCACCTACGAGGCGTTACAGACCTTGGTCAAACCCGAGTTAA
AGTGGGgtaggtagtcaaggagggagggagggagggagggagagaaggag
gagatcacaatccaggaaggagggaaggagggattgaggaaaggaggagc
agttcctagttcttatatgaggtctgctatcgccatctcattctcggttc
cacaataacaatggcagGCGAGGAGATGGAAATCGGCATTTTTAAGATCG
TTCCAGAAAAGGAAGGAAAAGAGGAAGGTCTAAAGGAGGAGGAGGAGAAA
GGGGGGGGGGAGGGAAGGAGGGAGGCAGGCGAATCGTGCTTTCGTTGA
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protein sequence of NO12G03700.1

>NO12G03700.1-protein ID=NO12G03700.1-protein|Name=NO12G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MGLLKVGQPLKWEDALPHLQYVREQGVLQFLATYEALQTLVKPELKWGEE
MEIGIFKIVPEKEGKEEGLKEEEEKGGGEGRREAGESCFR*
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Synonyms
Publications