NO12G03370, NO12G03370 (gene) Nannochloropsis oceanica

Overview
NameNO12G03370
Unique NameNO12G03370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2056
Alignment locationchr12:926145..928200 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:926145..928200 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010296NSK010296Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03370.1NO12G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592785gene_5511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03370.1NO12G03370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03370 ID=NO12G03370|Name=NO12G03370|organism=Nannochloropsis oceanica|type=gene|length=2056bp
TTCCCCCCACCGATTTCTCATAGTTTGTGGCATTTGGTTTTGTTTGTCGC
CTTGAGAAGACGATGTAAGATGTAAATGAGATATTGCTTTTGGGTAGTCT
TTGAATCCCTTGGATTGTCGAGGTCAAGCCCACCAGCAACTGCATCAGCA
GCGCCAGCAGAGAAGGGTGTATTGTCCGGGAGAAGAGGAGGATGGGGACA
AGGTGGGGTAAGTAGCAATTCTATGGCTAGGTAGGCATAGTGCAAGTTAT
TCTGGTATTTGTTGTTGCTTTTTTCTATGCACAATTTTTTCCTTGTGCAG
CAAAAGCAAGCAGTAGAAGGAATGCATGGCATGTGGCGGCCTTTCTGGCT
GTGATGCTCCCGCCTCTGGGAGTATGAGGCTACGCCTTTGCAACTCTCCT
TGCATGTCATTGTCTTAAACCCTTCCTCGGCATGTGGTGGCATGCTTTGA
CTTGAGTTGTTGTGGTCTCATGTGGTACACGTAGGCGTAGACAGAGTTCA
GCAAAGACCTCGACGTAGCCCTTTTTTTTACTACTCGCACACGAACACAG
CCCGAACTACACGGACGATAAGTGAGGAACATTAACTCACATTCCTAGGG
CAGCACTTGGTCAGGAGCCTGCTTATGGAGAGAGTAATCTCGCGTCCAAG
TTGACCTCCTGGCTGTTTAAGTGGATAAACCCCACGCCCCCGACCAGACC
CCGGCACAAGAACATGCTTACACCCCCAACTACTTAATCTATTTTTTACA
GTTCACCATGAAAACATTAATACACATATAGACCACAGCTGATAAGATCG
AGAAAGTAAACAGCTACACATAGACTCAACGCTGAGGATATGGATGCCGC
GCGCTATGATGAGTTTTGGGAAGAACTGAAAAAGgtataaaggctttgcg
agatcacctgtgagattacctgtcgagctatgaagaccccacctctccct
gcctcctcctggagggcctttgatcaaaataaatcactctcattcttcct
cttttcgcccttctcgcatgttcaggttattttcttaccctccccccatc
catctcttcctctcttcctttttatctcccagGCCTTAGGCAGCGCTCAA
TGGAGCCGGCATCTCCTTGTCTCATCACTCCACGCTCCAAAAATAAGAGA
GACAACAAAAGAGCAACATAATCACCACGACGACAACAACCGCAGCCAAG
AGCAAGAATACCTTCTCCTCCTCGACCTCAACTCTCACACCCTCTCCCTC
CTCACCAGCACCACCGCCGGCTCAAGAAAAGAAGATAGGAAAGGAAGCTT
CTATTCCGTAGTCCTTGATCCAGAAATACTACAAGCATGCCAGGAAGAGA
TAATAGAGTATGACAATATGGCCGACTTCGCTTCGGAGTTCGCAGGGGCT
CTCCAAGGGGAAAAGACCGTGAGTACACACGTGCAGATGACAAAGTCAAG
AGAAGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCTATGGTCATTGCGC
TCAGGTTTGATATAGAAGAGGAAACAATGTCGATTGCCCTGCCCTGCCTG
CAGGAAGGGATGACTCCTACCCTCCTTCCCGCCCTCTGCCCATTTTTCCA
TTTCGACGCTGCCACGGGCATCGGCAGGCAGCCGGCAGCGGTGGAGGAAG
GGAAGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGCCGCAGCTGCAGGA
CTGACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAGGGGGAGGAGGAGG
GAGAGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAGCGGGTAACGCGGA
GCTTAATCCATCCCAGGCTGCAGGTACGACAGTCATTGACAGGCTCAAAG
TGGGAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGAAGAGGAAGAAGAA
GGGAGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAGGGCGGGTTAAAGC
TGTGATGGCTGCGTGTGAAGGCACAACAAAGTAATTCGAAGTATCAATGT
ATGGAAAAGATAAGACTAAGACCAAAACACATGACGAGGGAAATAACAGT
GTGTAG
back to top

protein sequence of NO12G03370.1

>NO12G03370.1-protein ID=NO12G03370.1-protein|Name=NO12G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MDAARYDEFWEELKKALGSAQWSRHLLVSSLHAPKIRETTKEQHNHHDDN
NRSQEQEYLLLLDLNSHTLSLLTSTTAGSRKEDRKGSFYSVVLDPEILQA
CQEEIIEYDNMADFASEFAGALQGEKTVSTHVQMTKSREEKGAPPGPTAP
MVIALRFDIEEETMSIALPCLQEGMTPTLLPALCPFFHFDAATGIGRQPA
AVEEGKEKGCKPIGRQAAAAGLTRAQSEGGGGEGGGGGRGGGRGGGGGGQ
RVTRSLIHPRLQVRQSLTGSKWEDEDEEEREGRKRKKKGEVAEESKEKGK
GGLKL*
back to top
Synonyms
Publications