NO12G03160, NO12G03160 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03160 vs. NCBI_GenBank
Match: EWM25720.1 (rhomboid-like protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 392.5 bits (1007), Expect = 1.900e-105 Identity = 244/351 (69.52%), Postives = 270/351 (76.92%), Query Frame = 0 Query: 12 PLLFLAHHTIAAPASLSLSLVRHRHSFTWFSPPLAWLRHTQQHTXXXXXXXLHSSSTP-----------SWFRAHILPRTRLVPAYGTAGRGRXXXXXXXXXXXXXXXXXXXXXXXXXVNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKG-----GRQGGQLG 347 PL+ A T+A+ S + V HSF P+AW++H QQH+ XXXX SW R +L R R +PAYG A XXXXXXXXXXXXXXXXXXXXXX ++L++WTNRLLALNVAIF QQV+PSITLMGAKND+LIRRGEL+RLFTPMLLHGD+QHLMANSYTMYNLGHFIEPLFGG YL+LY+LSG+AGN LSF SGRAP+SIGASTAVSGLLGAVGLFCYRHR VWNLEGPLRSVAQAVVINGVLGMSS RIDNFGHLGGLVGG VCGWLFGPRLVPL T+EG FRGYVNSPILQT A GR+VRG LGR G G+ G + G Sbjct: 13 PLILAAIATVASTVLPSSAPVSRSHSFPL---PVAWIKHAQQHSSVLXXXXXXXXXXXXXXXXXXXXXHSWPR--MLSRRRFLPAYG-AXXXXXXXXXXXXXXXXXXXXXXXXXXEGGIDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQG 357
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_005855995.1 (hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526] >EKU20369.1 hypothetical protein NGA_2130210, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 379.0 bits (972), Expect = 2.200e-101 Identity = 190/233 (81.55%), Postives = 206/233 (88.41%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKG-----GRQGGQLG 347 ++L++WTNRLLALNVAIF QQV+PSITLMGAKND+LIRRGEL+RLFTPMLLHGD+QHLMANSYTMYNLGHFIEPLFGG YL+LY+LSG+AGN LSF SGRAP+SIGASTAVSGLLGAVGLFCYRHR VWNLEGPLRSVAQAVVINGVLGMSS RIDNFGHLGGLVGG VCGWLFGPRLVPL T+EG FRGYVNSPILQT A GR+VRG LGR G G+ G + G Sbjct: 14 IDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQG 246
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_005854128.1 (hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526] >EKU22233.1 hypothetical protein NGA_2130220, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 379.0 bits (972), Expect = 2.200e-101 Identity = 190/233 (81.55%), Postives = 206/233 (88.41%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAEAGRKVRGSLGRTKG-----GRQGGQLG 347 ++L++WTNRLLALNVAIF QQV+PSITLMGAKND+LIRRGEL+RLFTPMLLHGD+QHLMANSYTMYNLGHFIEPLFGG YL+LY+LSG+AGN LSF SGRAP+SIGASTAVSGLLGAVGLFCYRHR VWNLEGPLRSVAQAVVINGVLGMSS RIDNFGHLGGLVGG VCGWLFGPRLVPL T+EG FRGYVNSPILQT A GR+VRG LGR G G+ G + G Sbjct: 14 IDLSNWTNRLLALNVAIFIAQQVDPSITLMGAKNDQLIRRGELYRLFTPMLLHGDIQHLMANSYTMYNLGHFIEPLFGGPMQYLALYILSGLAGNALSFVSGRAPVSIGASTAVSGLLGAVGLFCYRHRHVWNLEGPLRSVAQAVVINGVLGMSSARIDNFGHLGGLVGGAVCGWLFGPRLVPLTTREGVFRGYVNSPILQTGWAALGRQVRGRLGRRSGLGAPPGKGGARQG 246
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_010477950.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa]) HSP 1 Score: 144.4 bits (363), Expect = 8.900e-31 Identity = 82/199 (41.21%), Postives = 122/199 (61.31%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPS-ITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS 316 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LHG+ HLM N Y++ ++G E L GG K +LS+Y+ S +A + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ +T R +++S Sbjct: 128 VNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHGNPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGAAMAWLLGPQWKYEYTTRDGRRVFMDS 324
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_006306211.1 (RHOMBOID-like protein 10, chloroplastic [Capsella rubella] >EOA39109.1 hypothetical protein CARUB_v10011881mg [Capsella rubella]) HSP 1 Score: 142.1 bits (357), Expect = 4.400e-30 Identity = 79/199 (39.70%), Postives = 122/199 (61.31%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNP-SITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNS 316 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LH + HL+ N Y++ ++G +E L GG K ++S+Y+ S +A + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ +T R +++S Sbjct: 126 VNGRRWTNVLLAINVIMYIAQVASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLLINCYSLNSIGPTVESL-GGPKRFISVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPKWKYEYTTRDGRRVFMDS 322
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_002287124.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94567.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 142.1 bits (357), Expect = 4.400e-30 Identity = 76/184 (41.30%), Postives = 120/184 (65.22%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRG-ELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSVA--QAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRL 300 + N+ T + LN+A+F +Q + P++T GAK L+ G +LHRL TP+ LHG + HLMANSY++ ++G IE FG S+ +++ Y+LSG+ GN +S P ++GAS A+ GL+GA F R++ ++ G + A + + N +LGM++P IDN+GH+GG +GG+ C +LFGP+L Sbjct: 529 IGKNTLTGNIFLLNIAVFGMQTLYPALTGWGAKRSDLLLEGRQLHRLITPIFLHGGIGHLMANSYSLKSMGMNIERSFGRSR-FVATYLLSGIMGNVVSAIQSPNP-AVGASGAIFGLVGAYYTFLSRNQDLFGYSGQRQKSALIETIGFNLLLGMTNPMIDNWGHIGGFIGGVGCAYLFGPKL 710
BLAST of NO12G03160 vs. NCBI_GenBank
Match: OEU15459.1 (rhomboid-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 142.1 bits (357), Expect = 4.400e-30 Identity = 77/203 (37.93%), Postives = 122/203 (60.10%), Query Frame = 0 Query: 120 NLNSWTNRLLALNVAIFFLQQVNPSITLMGAK-NDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRS--VAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQ 320 N SW R++ N+ + LQ NP +T+MG K ++K++ +L+RL TP+ LHG L HLM+N Y++ N+G E FG + +S Y+++G +GN LS P ++GAS AV G++G++ F R+ +G S + Q ++IN +G +SP +DN+GH+GG +GG+V + FGPRL G R V+ PI++ Sbjct: 63 NQRSWVGRIVIANLFCYALQTFNPKVTMMGVKLSEKILNGQQLYRLVTPVFLHGGLYHLMSNMYSLNNVGPITEQCFGPGRFAIS-YLIAGASGNLLSAMKSPNP-ALGASGAVFGVMGSLLFFMNRNSWYVGSQGQEYSSAIGQTLLINLAMGFASPMVDNWGHIGGAIGGLVMAYYFGPRLYLAELPGGVGRVVVDKPIVR 263
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_005713540.1 (unnamed protein product [Chondrus crispus] >CDF33721.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 141.7 bits (356), Expect = 5.800e-30 Identity = 84/204 (41.18%), Postives = 129/204 (63.24%), Query Frame = 0 Query: 128 LLALNVAIFFLQQ-VNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGP-----LRSVAQAVVINGVLGMS-SPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQFRGYVNSPILQTSLAE 325 LLALNV +F LQ + P++ + GAK + I G+ +RLF+PM LH + HL+ NS+++++ G +E FG + +LSLY+ SGV+GN LS+ P ++GAS A+ GL+GA + RHR + GP LRS+A V++N +G++ R+DNFGHLGG +GG+ +L GPRL T G+ + + PIL+ +++E Sbjct: 156 LLALNVGVFALQTLMGPNVLMRGAKVNSAITAGQYYRLFSPMFLHASVSHLLVNSFSLHSTGPSVESWFGKPR-FLSLYIASGVSGNVLSYFCSPTP-AVGASGAIFGLVGASLVVLGRHRQIL---GPRARKGLRSLAYVVIMNFGIGLTPGSRVDNFGHLGGFLGGIAFSYLLGPRLTVQKTNTGR-KVLRDIPILRQAVSE 353
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_009795484.1 (PREDICTED: rhomboid-like protease 2 [Nicotiana sylvestris]) HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29 Identity = 73/176 (41.48%), Postives = 112/176 (63.64%), Query Frame = 0 Query: 124 WTNRLLALNVAIFFLQ-QVNPSITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGP 298 WTN LALN+ ++ Q + + GAK + LI +G+L RL T LH ++ HLM N Y++ ++G +E + G + Y++LY+ S +A + +S+ +AP ++GAS A+SGL+G+ +F RHR MV EG LR +A +V+N +G+ + IDN+GHLGGL+GG WL GP Sbjct: 130 WTNIFLALNILVYIAQVATDGKLLFWGAKINSLINKGQLWRLITSSFLHANIGHLMVNCYSLNSVGPGVEKI-SGPRRYVALYLTSAIASSAMSYWLSKAP-AVGASGAISGLVGSFAVFVLRHRGMVKGTEGDLRYIANVIVLNMAIGLLNKGIDNWGHLGGLIGGAAASWLLGP 303
BLAST of NO12G03160 vs. NCBI_GenBank
Match: XP_010499128.1 (PREDICTED: RHOMBOID-like protein 10, chloroplastic [Camelina sativa]) HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29 Identity = 78/182 (42.86%), Postives = 114/182 (62.64%), Query Frame = 0 Query: 119 VNLNSWTNRLLALNVAIFFLQQVNPS-ITLMGAKNDKLIRRGELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSGVAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHR-MVWNLEGPLRSVAQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPR 299 VN WTN LLA+NV ++ Q + + GAK + LI RG+L RL T +LH + HLM N Y++ ++G E L GG K +LS+Y+ S +A + +S+ +AP S+GAS A+ GL+G+V +F RH+ MV L +AQ + +N +G+ S RIDN+GH+GGL+GG WL GP+ Sbjct: 127 VNGRRWTNVLLAINVIMYIAQVASDGRVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTAESL-GGPKRFLSVYLTSAIASSAMSYWFNKAP-SVGASGAIFGLVGSVAVFVIRHKQMVGGGNEDLMQIAQVIALNMTMGLMSRRIDNWGHIGGLLGGTAMAWLLGPQ 306 The following BLAST results are available for this feature:
BLAST of NO12G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03160 ID=NO12G03160|Name=NO12G03160|organism=Nannochloropsis oceanica|type=gene|length=1763bpback to top protein sequence of NO12G03160.1 >NO12G03160.1-protein ID=NO12G03160.1-protein|Name=NO12G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bpback to top Synonyms
Publications
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