NO12G02870, NO12G02870 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02870 vs. NCBI_GenBank
Match: EWM25760.1 (30s ribosomal protein s15 [Nannochloropsis gaditana]) HSP 1 Score: 217.2 bits (552), Expect = 3.700e-53 Identity = 116/166 (69.88%), Postives = 132/166 (79.52%), Query Frame = 0 Query: 1 MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIA-TPLYKYLTPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNLTGFT 166 MWRQ+L RL S S PT R L+SSAA S+ S + +P YKYL P SLLQ P PV+RAL+I+NADAPERKQAEKQ IEKFGVRPGDTGSTSVQVACLT+RI+H+KDHC N+QDKAARRGYT+LLTRRR LM+YLRRKDF +YQ+VIKEL LTGFT Sbjct: 1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166
BLAST of NO12G02870 vs. NCBI_GenBank
Match: GAX14436.1 (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0 Query: 61 EPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 E V++ ++ NA ER +++KQ ++ F RPGDTGS++VQ+A L+ RIQ ++ H +++DK ++RG +L +RRR ++ YL RKDF +Y+ V+K L L Sbjct: 140 ERVQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 240
BLAST of NO12G02870 vs. NCBI_GenBank
Match: GAX09910.1 (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 0 Query: 61 EPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 E V++ ++ NA ER +++KQ ++ F RPGDTGS++VQ+A L+ RIQ ++ H +++DK ++RG +L +RRR ++ YL RKDF +Y+ V+K L L Sbjct: 139 ERVQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 239
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_008611129.1 (hypothetical protein SDRG_07090 [Saprolegnia diclina VS20] >EQC35379.1 hypothetical protein SDRG_07090 [Saprolegnia diclina VS20]) HSP 1 Score: 90.5 bits (223), Expect = 5.300e-15 Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 56 LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 ++ P+ V R LN+DNA E Q + Q IE F PGDTGST VQVA LT +I+ + +H +++D +RRG S+++RR+ L++YLRR++ Y+ V+ L L Sbjct: 55 IRDAPDAVHRMLNLDNASQAEINQLKTQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_012210459.1 (hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65] >KDO18824.1 hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 89.7 bits (221), Expect = 9.000e-15 Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 56 LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 ++ P+ V R LN+DNA E Q + Q IE F PGDTGST VQVA LT +I+ + +H +++D +RRG S+++RR+ L++YLRR++ Y+ V+ L L Sbjct: 55 IRDAPDAVHRMLNLDNASQAEINQLKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160
BLAST of NO12G02870 vs. NCBI_GenBank
Match: OQR92631.1 (hypothetical protein ACHHYP_03473 [Achlya hypogyna]) HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13 Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 0 Query: 54 SLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 S ++ P+ V R L++DNA E + + Q IE F PGDTGST VQVA LT +I+ + +H +++D +RRG ++++RR+ L++YLRR++ Y+ V+ L L Sbjct: 54 SQIRDAPDAVHRMLSLDNASQEEINKIKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQTMISRRKKLLEYLRRENLQQYRAVVAALGL 161
BLAST of NO12G02870 vs. NCBI_GenBank
Match: EJK65565.1 (hypothetical protein THAOC_13560 [Thalassiosira oceanica]) HSP 1 Score: 83.6 bits (205), Expect = 6.400e-13 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 0 Query: 63 VERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 V+R ++ N E +++KQ G+E F +R GDTGS++VQV LT RIQ ++ H A +R+D +++RG + RRR L+ Y+ RK Y+ V+K L L Sbjct: 140 VKRLFDLKNGSQSEVVKSQKQRGMELFQLREGDTGSSAVQVVSLTTRIQQLQTHMAKHRKDHSSKRGLDRMYVRRRKLLDYMERKSDPNYRKVVKSLGL 238
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_011409735.1 (PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Amphimedon queenslandica]) HSP 1 Score: 83.2 bits (204), Expect = 8.400e-13 Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 0 Query: 18 LPPPASPTCRPLSSSAAPSDSFSSIATPLYKY-LTPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 LP +S C +SS A S T YK+ +++ PE V++ +I+ A +R + K I+K+ PGDTGST+VQ+A +T +IQ++ +H NR+DK++ R + RR+ L +YLRR DF Y ++KE L Sbjct: 24 LPSHSSLICSRAASSKAAGTGIS--ITSKYKFGYNDIPEMENSPEAVKKRFSIEFASKKQRNKLLKNEMIQKYQQNPGDTGSTAVQIAIMTAKIQNLTEHMRNNRKDKSSLRKLLHGIERRKKLFKYLRRTDFTRYHVLLKEFGL 166
BLAST of NO12G02870 vs. NCBI_GenBank
Match: XP_008868748.1 (ribosomal protein S15 [Aphanomyces invadans] >ETW02143.1 ribosomal protein S15 [Aphanomyces invadans]) HSP 1 Score: 82.8 bits (203), Expect = 1.100e-12 Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 0 Query: 25 TCRPLSSSAAPSDSFSSIATPLYKYLTPASL-------------LQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 T R +SAA S S ++ Y+ PA++ +++ PE V R L+++NA E + Q I F PGDTGS+ VQ+A LT +I+ + +H ++ D +RRG +++ +R+ L+QYLRR++ Y+ V+ L L Sbjct: 13 TLRTSGTSAAFSSSVGGEKKRVFDYVAPAAITENDLRLGFKPSQIENAPEEVRRTLSLENASQAELNKIAIQKAIAAFQRFPGDTGSSEVQIAILTQKIKRMTEHFRDHKHDNHSRRGLQTMINKRKKLLQYLRRENLQQYRAVVAALGL 162
BLAST of NO12G02870 vs. NCBI_GenBank
Match: WP_039672670.1 (30S ribosomal protein S15 [Sulfurospirillum cavolei] >KHG34270.1 30S ribosomal protein S15 [Sulfurospirillum sp. MES] >DAB36771.1 TPA: 30S ribosomal protein S15 [Sulfurospirillum cavolei]) HSP 1 Score: 81.6 bits (200), Expect = 2.400e-12 Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 80 AEKQLGIEKFGVRPGDTGSTSVQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFGAYQHVIKELNL 162 AEKQ+ + +FG + GDTGS VQ+A L+ RI + +H N +D ++R G L+ +R+ LMQYL+RKDF Y VIKEL++ Sbjct: 6 AEKQVIVSQFGRKEGDTGSPEVQIALLSKRISDLTEHLKLNAKDHSSRLGLLKLVGQRKRLMQYLKRKDFATYSKVIKELSI 87 The following BLAST results are available for this feature:
BLAST of NO12G02870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02870 ID=NO12G02870|Name=NO12G02870|organism=Nannochloropsis oceanica|type=gene|length=901bpback to top protein sequence of NO12G02870.1 >NO12G02870.1-protein ID=NO12G02870.1-protein|Name=NO12G02870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bpback to top Synonyms
Publications
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