NO12G02690, NO12G02690 (gene) Nannochloropsis oceanica

Overview
NameNO12G02690
Unique NameNO12G02690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1865
Alignment locationchr12:754847..756711 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:754847..756711 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G02690 vs. NCBI_GenBank
Match: EWM25762.1 (hypothetical protein Naga_100168g7 [Nannochloropsis gaditana])

HSP 1 Score: 401.4 bits (1030), Expect = 4.900e-108
Identity = 214/365 (58.63%), Postives = 250/365 (68.49%), Query Frame = 0 
Query:  228 SFFYPSSMRVMNSWPYYYSKVVPPTPVLPSSWKLACILRDRAEGRNVLMGCRFCGELDVFTEHMREQESSCPTQLRTWVVPCLCPALVHLRCLEAHVASARLQPSLSQAHSSPSFSSIPTG------YGLSPPARRKWISYDTALLPAAASESEGEKESLGRCQGCDSLYLPGFRLPAVGELVSVTWQDELAWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIFLSPRFARVVDLLWLGPVFRFYAKLYLYFLMATFGMLCFFTPLPKRVLGVCIMEGLGMPAWLMLVGGWGNFAVLATITSIVIFLFWKTNYRIPTIADLRETEPGGSEFLHPMLSIGGA 587
            SFF P+++R M+ +PYY S+ V   P LPSSWKLACILRDRAEGR+VLMGCRFCG+LDVFT+HMR+QESS PTQLRTWVVPCLCPALVH RCLEAHVA  + Q + + A  +PS  +  T        G    ++R+WISYD+A L A A     EK+SLG C  C SLYLPGFRLP V EL++VTW+DE+AW+R                                                  NIFLSPRFARVVDLLWLGP+FRFYAKLYLYFL+AT  MLC +TPLP+RVLG+ + E LG+P W + + G GNFAVL TITSIVIFLFWKTNYRI TIADLR+TE G S+F HPMLSIGGA
Sbjct:   35 SFFSPTTVRRMHGFPYYCSRAV--APPLPSSWKLACILRDRAEGRHVLMGCRFCGQLDVFTKHMRDQESSSPTQLRTWVVPCLCPALVHRRCLEAHVADLQ-QSAEACAKPAPSPPTAATRARTRRLVGGDNRSQRRWISYDSA-LHAPAPAPLAEKQSLGPCARCGSLYLPGFRLPTVRELIAVTWEDEMAWRRAGDCLLMWVMGVSIVALSEAAYRGDGELLFWPEEGGQVLFWWMFQYVISLNIFLSPRFARVVDLLWLGPIFRFYAKLYLYFLLATLTMLCTYTPLPRRVLGLSVTEALGIPGWAVALLGTGNFAVLWTITSIVIFLFWKTNYRIQTIADLRQTEAGMSDFEHPMLSIGGA 395
The following BLAST results are available for this feature:
BLAST of NO12G02690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25762.14.900e-10858.63hypothetical protein Naga_100168g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010210NSK010210Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02690.1NO12G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566639gene_5440Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100168g7gene4750Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02690.1NO12G02690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02690 ID=NO12G02690|Name=NO12G02690|organism=Nannochloropsis oceanica|type=gene|length=1865bp
ATGCTCTCGTCTCTTGGATTGTTTTCTTCAAGCACCACAGTACCGTCACC
TTCAGCAACCGACGACGACGTTGTCGCCTCCAGTTTACCACCAGCAGCGT
CACCACCAACGATATCACCGCCATTGCTACCTGTAGCTCTCTTTGTTGAC
CCACTGGCACATCTGCCTGGGGATGTGGTTTTCCTAATTGAGCTTTGCCT
CCCCGTGCAGACCTTGGTTTCCCTTTCTGCCGTAAATGTGGCCTGGAGCC
ACCTCTTGTGCGAAAGCCATTGGCACCGCGTCTTCCAAGCGCGTTGGTCA
CATTGCTACGAAGGCGGGCAAGGCTTAACTATCTCTCCCTCAATTTTGTC
TCGCCTGACGGGGAATTACCATTCGTTTTGGGCTACGATCGAGAAGGCCT
TCATGGGGGATAACTCCATCGTGGGAACGCGGCAGCGGGACTCCCTCTTT
GAGAGGCTCTTCAAGCTTTTGCAGCCCGCTACAGGCGGCGATGGTAATGA
GGTTGATAATAACGCTGACGATGACGGCGACGTCGGCGACGATGGCGACA
ACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAATAAC
AACAACAACAACAACGACAATGATACGCCCACTCCCTCCTCTTCAAGCAC
CAGCAGCACAACCAGCACCAGCAGCTATGCCTCTTTCTTCTACCCCTCCT
CCATGCGAGTGATGAATAGTTGGCCCTACTACTACTCCAAAGTCGTTCCT
CCCACCCCTGTCCTTCCGTCCTCCTGGAAACTCGCCTGCATACTCCGGGA
CCGCGCCGAAGGTCGCAATGTCCTAATGGGCTGTCGCTTCTGCGGTGAAC
TGGATGTCTTCACGGAGCACATGCGTGAGCAAGAATCCTCCTGTCCCACT
CAACTACGGACATGGGTCGTGCCCTGTCTGTGCCCGGCCCTTGTTCACCT
TCGATGCCTGGAAGCCCACGTGGCCTCTGCACGATTGCAACCGTCTTTGA
GCCAGGCACATTCTTCCCCATCTTTTTCATCCATTCCCACTGGTTACGGT
CTGTCTCCACCGGCACGGCGAAAATGGATCTCCTACGACACTGCTCTCTT
GCCTGCCGCCGCGAGCGAATCGGAAGGAGAGAAGGAGTCGTTGGGACGGT
GCCAAGGGTGCGACTCTTTGTACCTACCTGGCTTTCGGTTACCCGCCGTA
GGGGAGCTTGTTTCAGTGACATGGCAGGATGAACTCGCCTGGAAGAGAGC
GGGGGATTGCATTTTGATGTGGTTGATGGGTGTGGCAATCGTGGCATTGT
CTGAGGCGTTATATCAGGGGAACGGGGAGCTGCTGGCTTGGCCAGAGGAG
GGGGGTCAGGTGCTCTTCTGGTGGCTTCTGCAGTATGTGATTTCGTTGAA
CATTTTCCTGTCGCCTAGATTTGCAAGGGTGGTGGACCTGCTGTGGCTTG
GGCCGGTTTTCCGGTTTTATGCCAAGTTGTACTTGTATTTCTTGATGGCC
ACGTTTGGGATGCTTTGTTTTTTTACGCCTCTTCCTAAAAGGGTGTTGGG
GGTTTGCATTATGGAGGGTTTGGGGATGCCTGCATGGTTGATGCTAGTTG
GGGGATGGGGGAATTTTGCCGTGCTCGCCACGATAACCTCAATTGTGATT
TTCTTGTTTTGGAAGACAAATTATCGCATACCGACGATTGCGGATCTGAG
GGAGACTGAGCCGGGGGGGTCGGAATTCTTGCATCCCATGTTGTCGATTG
GCGGGGCATGAGGGAGGCATGGAGGGAGGGAGGGGAAAGAAAAAGGAGGG
AGAAAGCAAACAGGAGGAGCACAGAGATTGAGTGGCCTATAAAAGACACT
TGCATTATATGAAAT
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protein sequence of NO12G02690.1

>NO12G02690.1-protein ID=NO12G02690.1-protein|Name=NO12G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MLSSLGLFSSSTTVPSPSATDDDVVASSLPPAASPPTISPPLLPVALFVD
PLAHLPGDVVFLIELCLPVQTLVSLSAVNVAWSHLLCESHWHRVFQARWS
HCYEGGQGLTISPSILSRLTGNYHSFWATIEKAFMGDNSIVGTRQRDSLF
ERLFKLLQPATGGDGNEVDNNADDDGDVGDDGDNNNNNNSNNNNNNNNNN
NNNNNDNDTPTPSSSSTSSTTSTSSYASFFYPSSMRVMNSWPYYYSKVVP
PTPVLPSSWKLACILRDRAEGRNVLMGCRFCGELDVFTEHMREQESSCPT
QLRTWVVPCLCPALVHLRCLEAHVASARLQPSLSQAHSSPSFSSIPTGYG
LSPPARRKWISYDTALLPAAASESEGEKESLGRCQGCDSLYLPGFRLPAV
GELVSVTWQDELAWKRAGDCILMWLMGVAIVALSEALYQGNGELLAWPEE
GGQVLFWWLLQYVISLNIFLSPRFARVVDLLWLGPVFRFYAKLYLYFLMA
TFGMLCFFTPLPKRVLGVCIMEGLGMPAWLMLVGGWGNFAVLATITSIVI
FLFWKTNYRIPTIADLRETEPGGSEFLHPMLSIGGA*
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Synonyms
Publications