NO12G02200, NO12G02200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02200 vs. NCBI_GenBank
Match: XP_005856097.1 (splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526] >EKU20233.1 splicing factor 3B subunit 4, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 445.7 bits (1145), Expect = 1.400e-121 Identity = 214/223 (95.96%), Postives = 217/223 (97.31%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPGQFGTGMG 224 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTG HQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDR+TVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFD DTGHTKGFGFVS+DSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAAS Q VRFKAHTLFA+GPGQ GTGMG Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMG 223
BLAST of NO12G02200 vs. NCBI_GenBank
Match: XP_005853638.1 (splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526] >EKU22719.1 splicing factor 3B subunit 4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 445.7 bits (1145), Expect = 1.400e-121 Identity = 214/223 (95.96%), Postives = 217/223 (97.31%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPGQFGTGMG 224 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTG HQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDR+TVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFD DTGHTKGFGFVS+DSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAAS Q VRFKAHTLFA+GPGQ GTGMG Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMG 223
BLAST of NO12G02200 vs. NCBI_GenBank
Match: EWM25841.1 (splicing factor 3b subunit 4-like protein [Nannochloropsis gaditana]) HSP 1 Score: 445.7 bits (1145), Expect = 1.400e-121 Identity = 214/223 (95.96%), Postives = 217/223 (97.31%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPGQFGTGMG 224 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTG HQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDR+TVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFD DTGHTKGFGFVS+DSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAAS Q VRFKAHTLFA+GPGQ GTGMG Sbjct: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRKTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDPDTGHTKGFGFVSFDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASNQQAVRFKAHTLFATGPGQIGTGMG 223
BLAST of NO12G02200 vs. NCBI_GenBank
Match: CBN75315.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 309.7 bits (792), Expect = 1.200e-80 Identity = 151/215 (70.23%), Postives = 175/215 (81.40%), Query Frame = 0 Query: 3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPGQ 218 S +IEQRNQDAT Y G LD VTE LLWELM GPV +VHMP+DK+TG HQ FGFVEFRSE+DA+YA+KIMNMV+++GKPLRVNKASQDR+ DVGANLFIG L +VDEK LYDTFSAFG ITQ PKVM D DTG +KG+GFVSYD FEA+D AIECM+ YL R I VQYAYKKD++GERHG QAERLLA++ + +FK HTLF+ PG+ Sbjct: 2 SASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPS--KFKVHTLFSVAPGK 214
BLAST of NO12G02200 vs. NCBI_GenBank
Match: XP_009037519.1 (hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens] >EGB07513.1 hypothetical protein AURANDRAFT_59062 [Aureococcus anophagefferens]) HSP 1 Score: 309.3 bits (791), Expect = 1.600e-80 Identity = 145/216 (67.13%), Postives = 181/216 (83.80%), Query Frame = 0 Query: 1 MASGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPG 217 MA+G +EQRNQDAT Y G LDE++TE+LLWE+M GP+ +VH+PRDKVTGSHQ +GFVEFRSEEDADYA+K+MNMV+++GKPLRVNKASQD++T++VGANLF+G L +VDEK LYDTFSAFG IT+ PK+M D DTG++KGFGFVSYDSFEA+D AIECM+ +L + + V YA+K+DSK ERHGSQAERLLAA+ + K H +F +GPG Sbjct: 1 MATGPVEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSA--KPHAMFGTGPG 214
BLAST of NO12G02200 vs. NCBI_GenBank
Match: XP_024500197.1 (Splicing factor 3B subunit 4 [Strongyloides ratti] >CEF60988.1 Splicing factor 3B subunit 4 [Strongyloides ratti]) HSP 1 Score: 305.4 bits (781), Expect = 2.300e-79 Identity = 142/215 (66.05%), Postives = 173/215 (80.47%), Query Frame = 0 Query: 3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGPGQ 218 +GA+++RNQDAT+Y GGLDEKV E +LWEL GPV+ V+MP+D+VT +HQ FGFVEF SEEDADYA+KIMNM+++YGKP++VNKASQ +T+D+GANLF+GNL + +DEK LYDTFSAFGGI Q PK+M D +TG++KGF F+SYDSFEAAD AIE MNG +L R I V YA+KKDSKGERHGS AERLLA+ T K H FA GP Q Sbjct: 6 AGALQERNQDATIYVGGLDEKVNEAILWELFVQAGPVISVNMPKDRVTNNHQGFGFVEFLSEEDADYAIKIMNMIKLYGKPIKVNKASQSEKTMDIGANLFVGNLDSSIDEKLLYDTFSAFGGILQVPKIMRDVETGNSKGFAFISYDSFEAADLAIESMNGQHLANRQIQVSYAFKKDSKGERHGSAAERLLASKNPITKATKPHQQFAEGPNQ 220
BLAST of NO12G02200 vs. NCBI_GenBank
Match: CCI46669.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 303.9 bits (777), Expect = 6.700e-79 Identity = 147/210 (70.00%), Postives = 173/210 (82.38%), Query Frame = 0 Query: 3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFA 213 S AIEQRNQDATVY G LD+KV+E+LLWELM G VV+VHMPRDKVT +HQ +GFVEFR+EE A+YA+KIMNM+++YGKP+RV KASQD++T+D+GANLFIGNL EVDEK LYDTFSAFGGI + PK+M D DT H++GFGF+SYD+FEA+D AIECMN YL R I VQYA+KKDS ERHGSQAERLLA S + K HT FA Sbjct: 2 SAAIEQRNQDATVYIGNLDDKVSEELLWELMLQAGSVVNVHMPRDKVTTTHQNYGFVEFRTEECAEYAIKIMNMIQVYGKPIRVKKASQDKKTLDIGANLFIGNLDPEVDEKLLYDTFSAFGGIIETPKIMRDPDTKHSRGFGFISYDAFEASDLAIECMNAQYLCNRQIVVQYAFKKDSNNERHGSQAERLLAQSNPN--KLKPHTRFA 209
BLAST of NO12G02200 vs. NCBI_GenBank
Match: XP_003534692.1 (PREDICTED: splicing factor 3B subunit 4-like [Glycine max] >KRH36396.1 hypothetical protein GLYMA_09G001000 [Glycine max]) HSP 1 Score: 303.1 bits (775), Expect = 1.100e-78 Identity = 140/208 (67.31%), Postives = 174/208 (83.65%), Query Frame = 0 Query: 8 QRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGP 216 +RNQDAT Y G LD +++E+LLWEL GPVV+V++P+D+VT HQ +GFVEFRSEEDADYA+K++NM+++YGKP+RVNKASQD++++DVGANLFIGNL +VDEK LYDTFSAFG I PK+M D DTG+++GFGF+SYDSFEA+D AIE MNG YL R I V YAYKKD+KGERHG+ AER+LAAS TT + + HTLFASGP Sbjct: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGP 227
BLAST of NO12G02200 vs. NCBI_GenBank
Match: KHN19421.1 (Splicing factor 3B subunit 4 [Glycine soja]) HSP 1 Score: 302.4 bits (773), Expect = 1.900e-78 Identity = 140/208 (67.31%), Postives = 173/208 (83.17%), Query Frame = 0 Query: 8 QRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFASGP 216 +RNQDAT Y G LD ++ E+LLWEL GPVV+V++P+D+VT HQ +GFVEFRSEEDADYA+K++NM+++YGKP+RVNKASQD++++DVGANLFIGNL +VDEK LYDTFSAFG I PK+M D DTG+++GFGF+SYDSFEA+D AIE MNG YL R I V YAYKKD+KGERHG+ AER+LAAS TT + + HTLFASGP Sbjct: 20 ERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGP 227
BLAST of NO12G02200 vs. NCBI_GenBank
Match: CCA21261.1 (RNA polymerase Ispecific transcription initiation factor rrn3 putative [Albugo laibachii Nc14]) HSP 1 Score: 302.0 bits (772), Expect = 2.500e-78 Identity = 145/210 (69.05%), Postives = 173/210 (82.38%), Query Frame = 0 Query: 3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGSHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRRTVDVGANLFIGNLAAEVDEKDLYDTFSAFGGITQPPKVMFDADTGHTKGFGFVSYDSFEAADYAIECMNGAYLGGRPICVQYAYKKDSKGERHGSQAERLLAASTQTTVRFKAHTLFA 213 S AIEQRNQDAT+Y G LD+KV+E+LLWELM G VV+VHMPRDKVT +HQ +GFVEFR+EE A+YA+KIMNM+++YGKP+RV KASQD++T+D+GANLFIGNL EVDEK LYDTFSAFGGI + PK+M D DT H++GFGF+S+D+FEA+D AIECMN YL R I VQYA+KKDS ERHGSQAERLLA S + K HT FA Sbjct: 707 SAAIEQRNQDATIYIGNLDDKVSEELLWELMLQAGSVVNVHMPRDKVTTNHQNYGFVEFRTEECAEYAIKIMNMIQVYGKPIRVKKASQDKKTLDIGANLFIGNLDPEVDEKLLYDTFSAFGGIIETPKIMRDPDTKHSRGFGFISFDAFEASDLAIECMNAQYLCNRQIVVQYAFKKDSNNERHGSQAERLLAQSNPN--KLKPHTRFA 914 The following BLAST results are available for this feature:
BLAST of NO12G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02200 ID=NO12G02200|Name=NO12G02200|organism=Nannochloropsis oceanica|type=gene|length=1184bpback to top protein sequence of NO12G02200.1 >NO12G02200.1-protein ID=NO12G02200.1-protein|Name=NO12G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bpback to top Synonyms
Publications
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