NO12G02070, NO12G02070 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02070
Unique Name	NO12G02070
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4332
Alignment location	chr12:584870..589201 -

Link to JBrowse

Properties


Property Name	Value
Description	Prolyl 4-hydroxylase, alpha subunit

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:584870..589201 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0031418	L-ascorbic acid binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	iron ion binding
GO:0005488	binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR035917	YjbQ-like_sf
IPR005123	Oxoglu/Fe-dep_dioxygenase
IPR001602	UPF0047
IPR006620	Pro_4_hyd_alph

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: EWM25834.1 (Prolyl 4-hydroxylase, alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 809.3 bits (2089), Expect = 1.100e-230
Identity = 403/602 (66.94%), Postives = 471/602 (78.24%), Query Frame = 0

Query:  149 MKTRRHIAPSGAGDKPTSP----ASASSTMTKASFQSPDLLLLLSFVGVAFMAFIAGMYPTETEAVVQETKGFVTGLLSR----TIGGSSNYISNRKTFQRVVVDPNPSHDIAYPTARLLGPEVTEEEVKKAPFRPHILTDSINPPVTPRHGAGELGVFLYRNGFSEDPLNAVVSRERLCRSPDALASTLSAVVDEDWGCKEADGCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLNSARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMENVPIRMNTFEGHVFNIHKGRSVEEKGELVATYTMKAGRKSKDVKTYIF 743
            MKT R  APSGAG K +S     +S  ST TK   Q  D LL+ SFV  A +A +A MY      +V+ T+ F+  L  +    ++    +   + K F+RV+ D NPS D+A PTARLLG   T E++K APFRPH+LTDSINPPVTP H A  LG+FLY+NG S +P+N VV R+RLCRSP  LA+TL A VD++WGC+    CRVFLHNGWE+SNC+ELV+DDKLWLVPRHREF+WPTFKRGH VEVRHVASGNGEPI+VETLSESPKVFRLNNFFTS+EADELI + +NL DPVNGLHRSTTGQG +AQEDSHRTS+NAWD++SPASLRLKRRIF+LLGIRPYKNAWADGLQILRYN T+AYNSHFDYLE  +  R++SAR GG+NRFATVVVYLTDV  GGETVFP G ALDGTDKSY E ++EM+ QDIDLR IGIK GSWQERLVV+CRSKLAVRP+KAQAVLFY+QLP+GG D+ASLHGGCPVL+G+KWAANLWVWNGNVHG + TS     D    DGS  V FLS   G+SLYW+DTFF+ L   VP  MNTF+GH F+I +G + +EKG+LVATY MK     KD+ TY F
Sbjct:    1 MKTSRVAAPSGAGGKASSSLKHNSSQLSTKTKPQSQRYDYLLICSFVCAALVALLAYMY--SPAKMVRTTQDFMRSLFRKGIEFSVSTDRHTGKSMKPFRRVLADANPSEDVARPTARLLGHGPTLEDLKSAPFRPHVLTDSINPPVTPHHEADVLGLFLYKNGDSSNPINVVVPRDRLCRSPLTLAATLGAEVDKEWGCEGRSSCRVFLHNGWEVSNCDELVDDDKLWLVPRHREFIWPTFKRGHQVEVRHVASGNGEPIIVETLSESPKVFRLNNFFTSQEADELIAHTLNLKDPVNGLHRSTTGQGASAQEDSHRTSENAWDLNSPASLRLKRRIFDLLGIRPYKNAWADGLQILRYNLTKAYNSHFDYLEHPKGSRMDSARPGGSNRFATVVVYLTDVAAGGETVFPAGKALDGTDKSYGEALKEMESQDIDLRAIGIKPGSWQERLVVECRSKLAVRPVKAQAVLFYNQLPEGGQDNASLHGGCPVLEGVKWAANLWVWNGNVHGDEHTSQVEEED----DGSLTVNFLSTNKGYSLYWEDTFFAALQPGVPKSMNTFDGHTFHIFEGTTEKEKGKLVATYVMKKRANRKDIPTYRF 596

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: EWM24063.1 (Prolyl 4-hydroxylase, alpha subunit [Nannochloropsis gaditana])

HSP 1 Score: 342.0 bits (876), Expect = 4.900e-90
Identity = 190/451 (42.13%), Postives = 270/451 (59.87%), Query Frame = 0

Query:  298 VFLYRNGFSEDPLNAVVSRERLCRSPDALASTLSAVVDEDWGCKEADGCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASG-NGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLE--TTQKGRLNSARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDL-MENVPIRMNTFEGHVFNIHKGRSVEEKGELVATYTMKAGRKSKDVKTYIFRG 745
            V ++ NG S  P  ++    +   S + L S +  V+D   G      CRVF   G+EI     L ++  L+ VP  R F+WP F+ GH V V  V S   G PI++ETLS+SP+VF L NF ++E+ADE+I+  + +      L RSTTG    A   S RTS+NA+D  SP +++LKRR+F+LLG+RPY   WADGLQ+LRYN ++AY  H DYLE  +      +SA  GG NRFATV++YLTDVE GGETVFP G  L+   ++  EV  E + +    R   +K GSW+E +   C S+LAV+P K +AVLFY Q P G  D+ SLHG CPV++G+KWAANLWVWNG   G   TS +     K+++G  Q  F S V G +LYW+ T +  +      ++  T++GH +N+ +    +E G ++A++T++A +    +  Y + G
Sbjct:  141 VLIHDNGES-TPAGSLYLEPKTTTSIEELKSAVGLVIDACHG----GTCRVFDRYGYEIKALGALHDEQLLFAVPPSRHFVWPAFEIGHRVAVPGVTSSLPGHPIILETLSDSPRVFMLENFLSAEDADEVIETTLGITAAGFALKRSTTGT-QGAVVSSQRTSENAFDTTSPVAMKLKRRVFDLLGMRPYVETWADGLQVLRYNASKAYIPHMDYLEFDSNADHNFDSASPGGTNRFATVLLYLTDVEEGGETVFPLGEPLEKEMRTTQEVQAEARARG---RAADLKPGSWEEEMTETCISRLAVKPRKGRAVLFYSQHPDGRPDERSLHGACPVVKGVKWAANLWVWNGPRFGHSATSLA-----KEAEGKIQAVFSSAVEGVALYWETTRWGKMGPGEAELKAMTYQGHKWNVRRDEG-DEHGAVLASWTIEAEKAEDGIIKYRYEG 576

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: ETM00238.1 (hypothetical protein L917_03021 [Phytophthora parasitica])

HSP 1 Score: 275.8 bits (704), Expect = 4.300e-70
Identity = 151/375 (40.27%), Postives = 214/375 (57.07%), Query Frame = 0

Query:  347 RVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMA---AQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            RVF   G  + +  +++  D+L+LV     F+WP  + GH V V   AS   EP+++E++SESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G   +    ++  HRTS+NA+D  S  ++ +++R+F++L +  +K   ADGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +    E+  + GSW+  +V +C +KLA  P+K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D   D+S T    +  S +V          LYW  T  + L  N   I  N+F GH + I  G  +
Sbjct:  125 RVFNGRGELLQSYADILSGDRLYLVAPGLHFVWPFVELGHRVTVTSKASPTKEPVIIESISESPRTFRLHNFFSGEEADKLIKRTLEIDDPSNKLQQSTVGANDSKNKKKKSKHRTSENAFDTVSETAIAIRKRVFDVLALGEFKEEMADGLQLLRYQQKQAYIAHEDYFPAGAAKDFNFDPHKGGSNRFATVFLYLSDVPHGGQTVFPLAEMPEGLPAEYQHPPNSAQDYEAAGAEL-FEPGSWEMDMVRKCSTKLASYPLKGGAVLFYSQKPNGELDPMSLHGGCPVLEGTKWGANLWVWNRRRHGLDSV-DTSCTVTFSNPTSREV---------GLYWSGTLMTTLKANGGSIEYNSFTGHQWVIKDGEDI 488

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: ETI53896.1 (hypothetical protein F443_03241 [Phytophthora parasitica P1569] >ETM53432.1 hypothetical protein L914_03095 [Phytophthora parasitica])

HSP 1 Score: 274.6 bits (701), Expect = 9.700e-70
Identity = 151/375 (40.27%), Postives = 213/375 (56.80%), Query Frame = 0

Query:  347 RVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMA---AQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            RVF   G  + +  +++  D+L+LV     F+WP  + GH V V   AS   EP+++E++SESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G   +    ++  HRTS+NA+D  S  ++ +++R+F++L +  +K   ADGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +    E+  + GSW+  +V +C +KLA  P K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D   D+S T    +  S +V          LYW  T  + L  N   I  N+F GH + I  G  +
Sbjct:  125 RVFNGRGELLQSYADILSGDRLYLVAPGLHFVWPFVELGHRVTVTSKASPTKEPVIIESISESPRTFRLHNFFSGEEADKLIKRTLEIDDPSNKLQQSTVGANDSKNKKKKSKHRTSENAFDTVSETAIAIRKRVFDVLALGEFKEEMADGLQLLRYQQKQAYIAHEDYFPAGAAKDFNFDPHKGGSNRFATVFLYLSDVPHGGQTVFPLAEMPEGLPAEYQHPPNSAQDYEAAGAEL-FEPGSWEMDMVRKCSTKLASYPSKGGAVLFYSQKPNGELDPMSLHGGCPVLEGTKWGANLWVWNRRRHGLDSV-DTSCTVTFSNPTSREV---------GLYWSGTLMTTLKANGGSIEYNSFTGHQWVIKDGEDI 488

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: XP_008900443.1 (hypothetical protein PPTG_07826 [Phytophthora parasitica INRA-310] >ETK93747.1 hypothetical protein L915_03121 [Phytophthora parasitica] >ETN14174.1 hypothetical protein PPTG_07826 [Phytophthora parasitica INRA-310])

HSP 1 Score: 274.6 bits (701), Expect = 9.700e-70
Identity = 151/375 (40.27%), Postives = 213/375 (56.80%), Query Frame = 0

Query:  347 RVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMA---AQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            RVF   G  + +  +++  D+L+LV     F+WP  + GH V V   AS   EP+++E++SESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G   +    ++  HRTS+NA+D  S  ++ +++R+F++L +  +K   ADGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +    E+  + GSW+  +V +C +KLA  P K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D   D+S T    +  S +V          LYW  T  + L  N   I  N+F GH + I  G  +
Sbjct:  125 RVFNGRGELLQSYADILSGDRLYLVAPGLHFVWPFVELGHRVTVTSKASPTKEPVIIESISESPRTFRLHNFFSGEEADKLIKRTLEIDDPSNKLQQSTVGANDSKNKKKKSKHRTSENAFDTVSETAIAIRKRVFDVLALGEFKEEMADGLQLLRYQQKQAYIAHEDYFPAGAAKDFNFDPHKGGSNRFATVFLYLSDVPHGGQTVFPLAEMPEGLPAEYQHPPNSAQDYEAAGAEL-FEPGSWEMDMVRKCSTKLASYPSKGGAVLFYSQKPNGELDPMSLHGGCPVLEGTKWGANLWVWNRRRHGLDSV-DTSCTVTFSNPTSREV---------GLYWSGTLMTTLKANGGSIEYNSFTGHQWVIKDGEDI 488

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: ETL47125.1 (hypothetical protein L916_03092 [Phytophthora parasitica] >ETO82531.1 hypothetical protein F444_03308 [Phytophthora parasitica P1976] >ETP23667.1 hypothetical protein F441_03227 [Phytophthora parasitica CJ01A1] >ETP51682.1 hypothetical protein F442_03222 [Phytophthora parasitica P10297] >KUF76805.1 Transmembrane prolyl 4-hydroxylase [Phytophthora nicotianae] >KUF88986.1 hypothetical protein AM588_10003481 [Phytophthora nicotianae])

HSP 1 Score: 274.6 bits (701), Expect = 9.700e-70
Identity = 151/375 (40.27%), Postives = 213/375 (56.80%), Query Frame = 0

Query:  347 RVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMA---AQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            RVF   G  + +  +++  D+L+LV     F+WP  + GH V V   AS   EP+++E++SESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G   +    ++  HRTS+NA+D  S  ++ +++R+F++L +  +K   ADGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +    E+  + GSW+  +V +C +KLA  P K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D   D+S T    +  S +V          LYW  T  + L  N   I  N+F GH + I  G  +
Sbjct:  125 RVFNGRGELLQSYADILSGDRLYLVAPGLHFVWPFVELGHRVTVTSKASPTKEPVIIESISESPRTFRLHNFFSGEEADKLIKRTLEIDDPSNKLQQSTVGANDSKNKKKKSKHRTSENAFDTVSETAIAIRKRVFDVLALGEFKEEMADGLQLLRYQQKQAYIAHEDYFPAGAAKDFNFDPHKGGSNRFATVFLYLSDVPHGGQTVFPLAEMPEGLPAEYQHPPNSAQDYEAAGAEL-FEPGSWEMDMVRKCSTKLASYPSKGGAVLFYSQKPNGELDPMSLHGGCPVLEGTKWGANLWVWNRRRHGLDSV-DTSCTVTFSNPTSREV---------GLYWSGTLMTTLKANGGSIEYNSFTGHQWVIKDGEDI 488

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BLAST of NO12G02070 vs. NCBI_GenBank
Match: XP_009833410.1 (hypothetical protein H257_09001 [Aphanomyces astaci] >ETV77104.1 hypothetical protein H257_09001 [Aphanomyces astaci])

HSP 1 Score: 271.6 bits (693), Expect = 8.200e-69
Identity = 157/399 (39.35%), Postives = 221/399 (55.39%), Query Frame = 0

Query:  335 DEDWGCKEADGCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVP-GHSLYWQDTFFSDLMENVPIRMNTFEGHVFNIHKGRSVEEKGELVATYTMKAG 732
            DE     +A   RVF   G  I + +++  +D+L++VP    F+WP  K GH V V+   S  G+PIV+E+ ++SP+VF ++NFFT+EEAD LI+    ++D +N L RST G      E S RTS+NA+D  SP ++ L +R F+LL I  ++   ADGLQ+LRY   QAY  H D+ +       N   + GGANRFATV +YL++V  GG+TVFP      G + S         ++++DL E     GSW+ ++V QC SKLA  P K  +VLFY Q   G LD  + HGGCPVL+G KWAANLWVWN N +GP+                 +V+F++       L+W ++  SDL     I  N+F  H++     R V+       T   K G
Sbjct:   74 DETKTSSKAVADRVFTAIGKPIHSFDDIAPNDELYIVPTGLLFVWPFVKYGHRVTVQSAHSPTGKPIVLESYNDSPRVFLIHNFFTNEEADRLIERISEIDDDINKLKRSTVGHDDKGSESSVRTSENAFDAKSPEAISLMKRSFDLLNIGDFQENMADGLQLLRYKPKQAYIPHNDWFDIDSTSDFNWEPKAGGANRFATVFLYLSNVTRGGQTVFPLANMPPGVNHSAPPT-----DEELDLFE----KGSWEHKMVKQCYSKLASYPRKTASVLFYHQKGTGELDHRAEHGGCPVLEGTKWAANLWVWNRNRNGPE-------------GSPLKVDFVNTRDYPVKLFWANSHMSDLAPGHKINFNSFGKHIWTF---RDVDGNDLFTHTLNYKDG 447

[Close]

BLAST of NO12G02070 vs. NCBI_GenBank
Match: XP_009833411.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV77105.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 271.6 bits (693), Expect = 8.200e-69
Identity = 153/378 (40.48%), Postives = 216/378 (57.14%), Query Frame = 0

Query:  335 DEDWGCKEADGCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVP-GHSLYWQDTFFSDLMENVPIRMNTFEGHVFNI 711
            DE     +A   RVF   G  I + +++  +D+L++VP    F+WP  K GH V V+   S  G+PIV+E+ ++SP+VF ++NFFT+EEAD LI+    ++D +N L RST G      E S RTS+NA+D  SP ++ L +R F+LL I  ++   ADGLQ+LRY   QAY  H D+ +       N   + GGANRFATV +YL++V  GG+TVFP      G + S         ++++DL E     GSW+ ++V QC SKLA  P K  +VLFY Q   G LD  + HGGCPVL+G KWAANLWVWN N +GP+                 +V+F++       L+W ++  SDL     I  N+F  H++ I
Sbjct:   74 DETKTSSKAVADRVFTAIGKPIHSFDDIAPNDELYIVPTGLLFVWPFVKYGHRVTVQSAHSPTGKPIVLESYNDSPRVFLIHNFFTNEEADRLIERISEIDDDINKLKRSTVGHDDKGSESSVRTSENAFDAKSPEAISLMKRSFDLLNIGDFQENMADGLQLLRYKPKQAYIPHNDWFDIDSTSDFNWEPKAGGANRFATVFLYLSNVTRGGQTVFPLANMPPGVNHSAPPT-----DEELDLFE----KGSWEHKMVKQCYSKLASYPRKTASVLFYHQKGTGELDHRAEHGGCPVLEGTKWAANLWVWNRNRNGPE-------------GSPLKVDFVNTRDYPVKLFWANSHMSDLAPGHKINFNSFGKHIWVI 429

[Close]

BLAST of NO12G02070 vs. NCBI_GenBank
Match: XP_002901233.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59219.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 270.0 bits (689), Expect = 2.400e-68
Identity = 164/446 (36.77%), Postives = 234/446 (52.47%), Query Frame = 0

Query:  298 VFLYRNGFSEDPLNAVVSRERLC--RSPDALASTLSAVV--------------------DEDWGCKEADGCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQG---MAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            V +YRNG+S   +   +S E L        LA+ LS  +                    ++++        RVF   G  + +  +++  D+L+LV     F+WP  + GH V V   AS   EP+++E++SESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G             RTS+NA+D  S A++ +++R+F++L +  ++   ADGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +    E+  + GSW+  +V +C +KLA  P K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D + D+S T    +  S +V          LYW  T  + L  N   I  N+F GH + I  G  V
Sbjct:   54 VTVYRNGYSTGGVQMQLSAELLASRTGEGDLAAYLSQFIAVEGLHESVAHESEDADESNEKEYDVPGVMAGRVFNGRGELLQSYADILSGDRLYLVAPELHFVWPFVELGHRVTVTSKASPTKEPVIIESISESPRTFRLHNFFSGEEADKLIKRTLEIDDPSNKLQQSTVGANXXXXXXXXXXXRTSENAFDTVSEAAVDIRKRVFDVLSLGEFQADMADGLQLLRYQQKQAYIAHEDYFPVGAAKDFNFDPHKGGSNRFATVFLYLSDVPRGGQTVFPLAEMPEGLPTEYQHPPNSAQDYEAIGAEL-FEPGSWEMDMVRKCSTKLASYPSKGGAVLFYSQKPNGELDPKSLHGGCPVLEGTKWGANLWVWNRRRHGLD-SDDTSCTVTFTNPTSREV---------GLYWSGTLMTTLAANGGSIEYNSFTGHRWEIKDGEKV 488

[Close]

BLAST of NO12G02070 vs. NCBI_GenBank
Match: OWY96384.1 (hypothetical protein PHMEG_00033357 [Phytophthora megakarya])

HSP 1 Score: 268.5 bits (685), Expect = 6.900e-68
Identity = 166/446 (37.22%), Postives = 237/446 (53.14%), Query Frame = 0

Query:  298 VFLYRNGFSEDPLNAVVSRERLC--RSPDALASTLS----------AVVDEDWGCKEAD----------GCRVFLHNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEPIVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTG---QGMAAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRYNTTQAYNSHFDYLETTQKGRLN-SARRGGANRFATVVVYLTDVEVGGETVFPEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLAVRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHGPDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMEN-VPIRMNTFEGHVFNIHKGRSV 717
            V +YRNG+S   ++  +S E L        LA+ LS          +V  E+   +E+             RVF   G  +    +++  D+L+L+     F+WP  + GH V V   AS   EP+++E+LSESP+ FRL+NFF+ EEAD+LI   + ++DP N L +ST G        Q+  HRTS+NA+D  S  ++ +++R+F++L I  YK+   DGLQ+LRY   QAY +H DY         N    +GG+NRFATV +YL+DV  GG+TVFP     +G    Y       ++ +  +  +  + GSW+  +V +C +KLA  P K  AVLFY Q P G LD  SLHGGCPVL+G KW ANLWVWN   HG D   +S+ +    +  S +V+         LYW  +  S L  N   I  N+F GH + I     V
Sbjct:   54 VTVYRNGYSTGGVHMQLSAELLASRTGEGELAAYLSQFVAVEGLHESVAQEEEDTEESKEKEYEVPGVVADRVFNGQGELLQTYADILSGDRLYLIAPGLLFVWPFVELGHRVTVVSEASPTKEPVIIESLSESPRTFRLHNFFSGEEADKLIKRTLEIDDPANKLQQSTVGATDSKHKKQKSKHRTSENAFDTISETAVNIRKRVFDVLSIGKYKDDMCDGLQLLRYQQKQAYIAHEDYFPVGATSDFNFDPHKGGSNRFATVFLYLSDVARGGQTVFPLAEMPEGLAAEYGHPSTVAEDYEA-VGAMLFEPGSWEMDMVRKCSTKLASYPSKGGAVLFYSQKPNGELDPKSLHGGCPVLEGTKWGANLWVWNKRRHGLD-VDNSACSVTFTNPTSREVD---------LYWSGSLMSTLEPNGGNIVYNSFTGHQWVIKSDNEV 488

The following BLAST results are available for this feature:

BLAST of NO12G02070 vs. NCBI_GenBank

BLAST of NO12G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25834.1	1.100e-230	66.94	Prolyl 4-hydroxylase, alpha subunit [Nannochlorops...	[more]
EWM24063.1	4.900e-90	42.13	Prolyl 4-hydroxylase, alpha subunit [Nannochlorops...	[more]
ETM00238.1	4.300e-70	40.27	hypothetical protein L917_03021 [Phytophthora para...	[more]
ETI53896.1	9.700e-70	40.27	hypothetical protein F443_03241 [Phytophthora para...	[more]
XP_008900443.1	9.700e-70	40.27	hypothetical protein PPTG_07826 [Phytophthora para...	[more]
ETL47125.1	9.700e-70	40.27	hypothetical protein L916_03092 [Phytophthora para...	[more]
XP_009833410.1	8.200e-69	39.35	hypothetical protein H257_09001 [Aphanomyces astac...	[more]
XP_009833411.1	8.200e-69	40.48	hypothetical protein, variant [Aphanomyces astaci]...	[more]
XP_002901233.1	2.400e-68	36.77	conserved hypothetical protein [Phytophthora infes...	[more]
OWY96384.1	6.900e-68	37.22	hypothetical protein PHMEG_00033357 [Phytophthora ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL126	nonsL126	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR008	ngnoR008	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010143	NSK010143	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G02070.1	NO12G02070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631006	gene_5365	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100021g37	gene4697	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G02070.1	NO12G02070.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G02070 ID=NO12G02070|Name=NO12G02070|organism=Nannochloropsis oceanica|type=gene|length=4332bp
ATGGCAAGCACGGGAATTTGCAAAGGCGAGACGGCATGGCTGCAGAAGAC
CATCACAGTGCAGGCTGAAGGGCGGGGATGTGAACTCATCACAAAACAAG
TAGTAGATGCCGTCCCTGAGCTGCGCAAATTTTCCGTCGGCACGCTTACC
GTCTTCATTCAGCACACTTCTGCCTCTCTTTCTATCAACGAAAACGCCGA
CCCTACCGgtgagcgagaaagaatcaatcatgtactgacttgtatttaaa
catgaaatattttttccgatagcaaatatcacatctcctcaatgccatgc
atcaccaatccacaaaaccagTCCGCACAGACATGGAGAAAGCCCTGAAC
ATGATCGTCCCTGATAGCTGGGCGACGGGCGGCTTGCTGGATCACGTTGA
CGAAGGGCCTGACGATATTACGGGCCATGTGAAGGCAACCCTTGTAGGAG
CAAATTTGACCATACCTGTCATGAAGGGCCGACTAGCTCTCGgtacgtgg
cagggtatctatctgtgcgagcatcgcaacgcgggcggttatggaggagg
ccacgcgcggcgcctcatcattacgattcatggtctagtgtgttcttgag
cgttagaggagggggcagcggatcagtacggattcgagtgggcagggaaa
atggttggatgaccggtgaggcataagacgaaccacataacatgaaactt
caagcccccccggggggatgtctttttctgctttgttcttgacgctttat
tgtgaacgtttgctttgtcgatgatgttaagggaccccttaagaaattat
agggtaaggggagaggggagaaatgttggtgaagcaaaatgttcatcttg
attgctcagacagagttctgtaacaggacgacgctcacatttcatgcact
tgaaataccttcatgcttgtgcgattgtgacatgtatatatcttctgacc
aaataaatctagggaatcgatttgcatctttcatctcaccagctacatct
attaccatggcggtacctaggccctgtggcttctgccaaggattcaaccg
cgaaccgcgtggggtagaatatgggatgattttaccggattttacagcaa
gaacgacaggagcgtggtagttaccgccggaaagactatgtcaggcactt
tacgtgtgccaagccacggtcgactcactctaaatgatatacatacatac
atttatgtcgataaatgtcgatttgaaatatttccctacagttctgtgat
tcggaatcacgagcgagagcgctgatcggccccccgagcaaaagagtttg
gcttgcttgcctggaccgcctgcccctcacggcatgcaactaattgaaaa
caacgagcattttgaggtatgagcattcccgggagacagtgtcgtgcttg
tagccaaatttttctccaaatcgccatcttttcaaatgtatgggcttctt
tcttcacaccttcgtcaacccttcgggtgagctgcatccaagcaagaaca
catggttctgtcccggagcaccgaaccacacttcactgtccgacaattga
actcacaacttccattgcacctctttctacacagTCAAATCCCAGGATCT
TGCGCGGACGTCTTCCTCGCAGGTGAATAGCTACCGCGGGGAGAGGATAA
TGAAGACCCGACGACATATTGCCCCTTCTGGGGCAGGCGACAAACCCACC
TCGCCGGCCTCTGCGTCGTCCACAATGACCAAGGCGTCTTTCCAAAGCCC
TGATCTACTCCTTCTACTCAGCTTCGTGGGCGTTGCTTTCATGGCCTTCA
TTGgtacgtatcaaacacgcgtttgtgtcctcccatgcctttgaattcga
cgttcacatggtgcattttgatgcctatgcgaggtcgtgccgatacgata
ccgatcagagcctcatcatgtcttatcaatgtaaacggatttgtccgcga
tttctccctggctcaagcatttctttcctttttaacttaaagaaattctt
aatgccgctccagccatatcagttcagaccatcggcaagagactacccac
cccccgcaaatggtaacaccccttataacaatcacccactctccccaacc
tctttcctatctccacacacagCCGGCATGTACCCCACCGAAACCGAGGC
CGTGGTTCAGGAGACGAAAGGCTTCGTGACAGGTCTGCTGAGCAGGACGA
TCGGCGGCAGCAGCAACTACATCAGTAACAGAAAAACCTTCCAGCGAGTG
GTGGTGGACCCCAATCCTTCGCACGACATAGCCTACCCGACAGCACGTCT
TTTGGGACCGGAAGTGACCGAGGAAGAAGTGAAGAAAGCCCCGTTTCGAC
CGCACATTCTCACGGACTCTATCAACCCGCCTGTGACCCCCCGCCATGGT
GCCGGCGAGTTGGGTGTATTTCTGTATCGCAACGGCTTCTCAGAAGACCC
CCTAAACGCCGTTGTATCGCGGGAGAGACTTTGCCGCTCGCCCGACGCCC
TGGCCTCGACCCTGAGCGCCGTGGTGGACGAGGACTGGGGCTGCAAGGAA
GCGGACGGCTGCCGGGTATTCTTGCACAATGGATGGGAGATCTCCAATTG
CGAGGAGCTAGTTGAGGATGATAAGCTCTGGCTGGTGCCTCGGCATCGAG
AGTTTATGTGGCCTACCTTCAAGCGGGGCCATCTGGTAGAGGTGCGGCAC
GTGGCGTCGGGCAATGGGGAGCCCATCGTGGTTGAGACCCTCTCCGAGTC
GCCCAAGGTTTTCCGGCTTAACAACTTTTTCACCTCCGAGGAAGCGGACG
AGCTCATCGACAATGCCGTGAATCTGAACGATCCCGTCAATGGCCTCCAC
CGCTCAACCACGGGCCAGGGCATGGCCGCGCAGGAGGACAGTCACCGCAC
AAGTGACAATGCGTGGGACATTGACTCACCCGCCTCCCTCCGTCTGAAGC
GCCGAATCTTCGAGCTGCTGGGTATCCGTCCTTACAAAAATGCCTGGGCT
GACGGCTTGCAGATCCTGCGGTATAATACCACGCAGGCTTACAACAGTCA
TTTTGACTACCTGGAGACTACGCAGAAAGGCCGCCTCAACTCGGCCCGGC
GGGGGGGCGCTAATCGATTTGCCACTGTGGTAGTGTATCTGACGGACGTG
GAGGTGGGGGGCGAGACAGTTTTTCCCGAAGGCGGTGCGCTGGATGGGAC
GGATAAGAGCTACGATGAGGTCATGAGGGAAATGAAGGAGCAAGATATCG
ACCTGCGTGAGATAGGCATCAAGGCAGGTTCGTGGCAGGAGCGTTTGGTC
GTCCAGTGCCGCAGCAAGCTGGCCGTGAGGCCCATGAAGGCTCAGGCCGT
TCTTTTCTATGACCAGCTGCCGCAGGGAGGGCTGGACGATGCCTCTCTGC
ATGGAGGCTGCCCGGTCCTGCAGGGCATCAAGTGGGCCGCTAACCTGTGG
GTGTGGAATGGCAATGTGCACGGCCCTGACGAAACAAGCGATTCCAGCGC
AACGGATGGCAAAGACAGTGACGGCAGCCATCAAGTCGAATTTCTCAGCG
TAGTGCCTGGCCATAGCTTGTACTGGCAAGACACCTTTTTCTCAGACCTG
ATGGAGAATGTACCTATACGTATGAACACTTTTGAGGGCCATGTCTTCAA
CATTCACAAAGGGCGCAGTGTGGAGGAGAAAGGCGAACTTGTGGCCACGT
ACACTATGAAGGCAGGGCGAAAGTCCAAGGACGTAAAGACGTACATATTT
AGAGGTTATGCGGAAGATGAGGAGGAGGTAGAGGAGACGTGGAGTGAGGA
TGGCGAGGAGGCTTTCGAAGACGAGGAGGATTTTGAAGACGAGGAGGATT
TTGAAGACGAGGAGGAATTTGAAGACGAGGAGGAATTTGAAGACGAGGAA
GAATTTGAAGACGAGGAGAATTTTGAAGACGAGGAGGACGAGGAGGATTT
CGATATGGAATGGAGTAGGTGAGCGGGGTGACGATGATCGTTAAAAAAAA
AAAGAAAACCCCAGAAACAATACAGTGTGTGCGGCTTCTGGGCCTGAGAA
GAAACAACTTCAGCAAAATAAGCACGCTGGTATGTAGGTTAAGAATTTTA
GTTTGGGATTGAAAAAAGACAAAAGGAATAAATTTCAAGAAGACAAATTC
GAGGAATTGAGGTTTGAGAATATGATAACTATTGAGGAGCCCCAGGCTGC
TACTAAGCGGCCTCATCTTCGTTTCCCCTATTCCCGCCCGGGCTTCTAAA
ATTGCGGGATGCCAGCTTTGGGTGTCCGTCCGCAGCGCCTCTGATTGGGC
ACGCACATGGTTTTGCTTGGGCCGAACGGCTG

protein sequence of NO12G02070.1

>NO12G02070.1-protein ID=NO12G02070.1-protein|Name=NO12G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=816bp
MASTGICKGETAWLQKTITVQAEGRGCELITKQVVDAVPELRKFSVGTLT
VFIQHTSASLSINENADPTVRTDMEKALNMIVPDSWATGGLLDHVDEGPD
DITGHVKATLVGANLTIPVMKGRLALVKSQDLARTSSSQVNSYRGERIMK
TRRHIAPSGAGDKPTSPASASSTMTKASFQSPDLLLLLSFVGVAFMAFIA
GMYPTETEAVVQETKGFVTGLLSRTIGGSSNYISNRKTFQRVVVDPNPSH
DIAYPTARLLGPEVTEEEVKKAPFRPHILTDSINPPVTPRHGAGELGVFL
YRNGFSEDPLNAVVSRERLCRSPDALASTLSAVVDEDWGCKEADGCRVFL
HNGWEISNCEELVEDDKLWLVPRHREFMWPTFKRGHLVEVRHVASGNGEP
IVVETLSESPKVFRLNNFFTSEEADELIDNAVNLNDPVNGLHRSTTGQGM
AAQEDSHRTSDNAWDIDSPASLRLKRRIFELLGIRPYKNAWADGLQILRY
NTTQAYNSHFDYLETTQKGRLNSARRGGANRFATVVVYLTDVEVGGETVF
PEGGALDGTDKSYDEVMREMKEQDIDLREIGIKAGSWQERLVVQCRSKLA
VRPMKAQAVLFYDQLPQGGLDDASLHGGCPVLQGIKWAANLWVWNGNVHG
PDETSDSSATDGKDSDGSHQVEFLSVVPGHSLYWQDTFFSDLMENVPIRM
NTFEGHVFNIHKGRSVEEKGELVATYTMKAGRKSKDVKTYIFRGYAEDEE
EVEETWSEDGEEAFEDEEDFEDEEDFEDEEEFEDEEEFEDEEEFEDEENF
EDEEDEEDFDMEWSR*

Synonyms

Publications