NO12G01290, NO12G01290 (gene) Nannochloropsis oceanica

Overview
NameNO12G01290
Unique NameNO12G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr12:409397..410455 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone-lysine N-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:409397..410455 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
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BLAST of NO12G01290 vs. NCBI_GenBank
Match: EWM25918.1 (histone-lysine n-methyltransferase setd1a [Nannochloropsis gaditana])

HSP 1 Score: 320.1 bits (819), Expect = 8.700e-84
Identity = 166/293 (56.66%), Postives = 198/293 (67.58%), Query Frame = 0 
Query:   66 GVQKTLQAALSGECDTIALLKYLHEDIAEIRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHLESFLVGHKVDLFNAAGEMKSGRILRYDATKDQHFIALESTGVRKWVTLREESARISLEIIWGRIYGAPWWPGEIWCHTRKFLEGERPYPLVEGKLLVVFFAGNTHGWINPAGNLEGQIRLLMEEVDGEMMKKLENKKFAKDRTKIELALQEGKQEQQKIFELQDRAVAEAMKE--RVTAAVMGMGG----GVGGGRWP 353
            G QKTLQ ALSGECDT+ALLK LH+DI  +RQ                                                            +HLESFLVGHKVDLFNAAGEMKSGRILRYDA KDQH +AL+ TGV++WVTLREESAR+SLE++WGRIYGAPWWPGE+WCHT KFL GE+PYPLVEGK+LVVFFAGNTHGWINP+ N+EGQ+RL++EEV+  M+KKL  K+F KD+ KIE AL EGK+EQ++I ELQD+A+ EA++E  R+ A    +GG    G GG R P
Sbjct:   56 GNQKTLQTALSGECDTLALLKSLHDDITNVRQ----------------QRTAETVLPTNGPMDPERGYQEHSGDECRDSPVRKREVSGPLVNAHLESFLVGHKVDLFNAAGEMKSGRILRYDARKDQHLLALQPTGVKRWVTLREESARVSLEVVWGRIYGAPWWPGEVWCHTTKFLGGEQPYPLVEGKVLVVFFAGNTHGWINPSQNVEGQMRLMVEEVEEAMLKKLGAKRFTKDKPKIEAALLEGKREQERIIELQDQALVEAVREGQRMEAVGGSLGGRGPAGKGGSRRP 332
The following BLAST results are available for this feature:
BLAST of NO12G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25918.18.700e-8456.66histone-lysine n-methyltransferase setd1a [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01290.1NO12G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01290.1NO12G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01290 ID=NO12G01290|Name=NO12G01290|organism=Nannochloropsis oceanica|type=gene|length=1059bp
ATGGCACCCAAGAAGACAGCTGGAGGAAGTGCTGCTTCGGCTGGGGAAGC
CAACGGTAACTCTAGTACAGGCGGGGGCACCAAGCGCAAGGCTGATGGAA
GTGGTACCGCTGTCACTGCTTTAAATAGTGCCAGCGTAACTGCGGCCAGT
TGCAGTAGTACCGGTGGTGGTGGTAGTAAGAAGAAAAAGAGCACCGGGGT
ACAGAAGACACTCCAGGCGGCTCTCTCTGGGGAGTGTGACACGATTGCGT
TGCTCAAATACCTGCACGAGGACATTGCCGAGATCCGACAGCAACAAGTT
AACGAGGCAGCAGCAGCAGCACTCGCAGCTACTGCTGGTCCCTCCACCGC
CACTGCCACCGACCACCGAGAGCAACAGGATGGGGCTCAAGTAGAAGAAC
CCGACGACGGAGGCAGCAACAAAATCCCCTCCACTCACCGGCAACGTAGT
GCCGCCACCACCGCCGCTGCCTCGCATCTAGAATCATTCCTTGTCGGACA
CAAAGTTGATCTTTTTAATGCGGCTGGTGAGATGAAATCAGGTCGTATCT
TGCGATATGACGCAACGAAAGACCAACATTTTATAGCGCTGGAGTCCACA
GGGGTCAGAAAATGGGTGACTCTTAGAGAAGAATCCGCCCGAATATCTCT
TGAGATAATCTGGGGGAGGATTTACGGTGCCCCTTGGTGGCCTGGGGAGA
TCTGGTGCCACACGCGAAAGTTTTTAGAAGGGGAGCGCCCTTACCCCCTA
GTGGAGGGCAAATTGCTGGTCGTGTTTTTTGCGGGTAATACACACGGCTG
GATCAATCCAGCAGGCAATCTGGAGGGACAAATTCGGTTGTTGATGGAGG
AGGTGGACGGGGAGATGATGAAGAAACTGGAAAATAAGAAGTTTGCCAAG
GATAGAACGAAGATTGAGTTGGCCTTGCAGGAAGGGAAGCAGGAGCAGCA
GAAAATTTTTGAATTGCAGGATCGGGCGGTGGCGGAGGCGATGAAGGAAA
GAGTAACCGCTGCTGTTATGGGGATGGGAGGAGGAGTGGGGGGGGGAAGG
TGGCCGTAA
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protein sequence of NO12G01290.1

>NO12G01290.1-protein ID=NO12G01290.1-protein|Name=NO12G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MAPKKTAGGSAASAGEANGNSSTGGGTKRKADGSGTAVTALNSASVTAAS
CSSTGGGGSKKKKSTGVQKTLQAALSGECDTIALLKYLHEDIAEIRQQQV
NEAAAAALAATAGPSTATATDHREQQDGAQVEEPDDGGSNKIPSTHRQRS
AATTAAASHLESFLVGHKVDLFNAAGEMKSGRILRYDATKDQHFIALEST
GVRKWVTLREESARISLEIIWGRIYGAPWWPGEIWCHTRKFLEGERPYPL
VEGKLLVVFFAGNTHGWINPAGNLEGQIRLLMEEVDGEMMKKLENKKFAK
DRTKIELALQEGKQEQQKIFELQDRAVAEAMKERVTAAVMGMGGGVGGGR
WP*
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Synonyms
Publications