NO12G00700.1, NO12G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00700.1
Unique NameNO12G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length813
Alignment locationchr12:246277..248019 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:246277..248019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00700.1 vs.
Match: CBJ48812.1 (ubiquitin-activating enzyme E1 [Ectocarpus siliculosus])

HSP 1 Score: 314.3 bits (804), Expect = 3.700e-82
Identity = 156/271 (57.56%), Postives = 208/271 (76.75%), Query Frame = 0 
Query:    2 VPDFSPQEGVKIAVTDAEAKQQAEQGGGGGVSSSL-DLESRCESIIASLPPPASLVGFALQPVDFDKDVDAHMLVVTATSNLRAANYKIPEADMHKTRQIAGKIIPAIATTTALVTGLVCLELYKLVLKKPIEAHKSAFINLALPLFTFSEPQPPASQKAVVKGEEWKWSAWDRIDIEG-DLTLREFLTYMEEQFGLEVSMLSHGVSLLYSSLTSKKNIELRMPMRLSEVVATVTKKPLSEGKKFLILEVICMDAETMDDVEVPYVRLRIK 271
            VP F P +GVKIA T+AEAK+Q   GGGGG  + L D++++CE ++  LP PA +  F L+ V+FDKD+D HM  VTA SNLRA  YKIPEADMH++RQIAGKIIPAIATTTALVTGLVC+E+YK++ +KP+E++K+ F+NLALP F+ SEP PPA    ++KG EWKWSAWD +++EG D+TL++    M+E++GLEV+MLSHGVS+LYS   SKK I  R+PM L ++V  VTKK +   +++LI EV   D ET D+ EVPY+RL+++
Sbjct:  766 VPVFKPVDGVKIATTEAEAKEQGAGGGGGGGGAQLEDVDAQCERMLGELPKPADMKDFRLEVVEFDKDLDEHMEFVTAASNLRARVYKIPEADMHRSRQIAGKIIPAIATTTALVTGLVCMEVYKIMQEKPLESYKNWFLNLALPQFSCSEPLPPAKTATMIKGSEWKWSAWDSLELEGADITLQQLFDIMKEKYGLEVTMLSHGVSILYSFFASKKKIAERLPMTLPKIVELVTKKDIPASQRYLIFEVCVSDMETDDEREVPYIRLKLR 1036
The following BLAST results are available for this feature:
BLAST of NO12G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48812.13.700e-8257.56ubiquitin-activating enzyme E1 [Ectocarpus silicul... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00700NO12G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00700.1NO12G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00700.1.cds1NO12G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00700.1.cds2NO12G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00700.1.cds3NO12G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00700.1.cds4NO12G00700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00700.1.cds5NO12G00700.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00700.1.cds6NO12G00700.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00700.1 ID=NO12G00700.1|Name=NO12G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ATGGTGCCCGATTTTTCTCCGCAAGAGGGCGTCAAAATCGCCGTCACGGA
CGCAGAGGCCAAGCAGCAGGCCGAGCAAGGAGGAGGGGGGGGGGTATCCT
CCTCCCTCGACTTGGAGAGCCGGTGCGAGTCCATCATTGCCTCCCTCCCT
CCCCCCGCGTCGCTGGTCGGCTTTGCCCTCCAGCCCGTGGATTTCGACAA
GGACGTGGATGCGCACATGCTGGTGGTGACGGCGACGAGTAACCTCCGGG
CTGCCAACTACAAAATTCCCGAGGCGGACATGCACAAGACGCGCCAAATC
GCGGGGAAGATCATTCCCGCCATCGCCACCACCACTGCTCTCGTCACAGG
CCTCGTCTGCCTTGAGCTCTACAAGCTCGTCCTCAAGAAACCTATAGAGG
CACATAAGTCTGCTTTCATCAACCTCGCCCTCCCTCTCTTCACCTTTTCG
GAGCCCCAGCCACCCGCCAGCCAGAAGGCGGTGGTGAAGGGAGAGGAATG
GAAGTGGAGCGCATGGGACAGGATCGACATCGAAGGTGACCTGACCCTCC
GTGAATTCTTGACTTACATGGAAGAGCAATTCGGGCTGGAAGTGAGCATG
CTTTCGCACGGGGTCTCGCTCCTCTACTCCTCCCTCACCAGCAAGAAGAA
CATTGAGCTCCGGATGCCCATGCGCCTGAGCGAGGTGGTTGCGACCGTGA
CGAAAAAGCCTCTTTCGGAAGGGAAGAAGTTTTTGATTCTGGAGGTTATT
TGCATGGACGCGGAGACAATGGACGATGTGGAGGTGCCTTACGTCAGGCT
GAGGATCAAGTAA
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protein sequence of NO12G00700.1

>NO12G00700.1-protein ID=NO12G00700.1-protein|Name=NO12G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MVPDFSPQEGVKIAVTDAEAKQQAEQGGGGGVSSSLDLESRCESIIASLP
PPASLVGFALQPVDFDKDVDAHMLVVTATSNLRAANYKIPEADMHKTRQI
AGKIIPAIATTTALVTGLVCLELYKLVLKKPIEAHKSAFINLALPLFTFS
EPQPPASQKAVVKGEEWKWSAWDRIDIEGDLTLREFLTYMEEQFGLEVSM
LSHGVSLLYSSLTSKKNIELRMPMRLSEVVATVTKKPLSEGKKFLILEVI
CMDAETMDDVEVPYVRLRIK*
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mRNA from alignment at chr12:246277..248019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00700.1 ID=NO12G00700.1|Name=NO12G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp|location=Sequence derived from alignment at chr12:246277..248019+ (Nannochloropsis oceanica)
ATGGTGCCCGATTTTTCTCCGCAAGGTACAGATCAACCCTCCCTCCCTCC
CTCCCTCCCTTCCTCCTTCTCTCCCTCCCCTTCTCAAGCTCTTCCCGCGA
GACCTCCACAACCTTCCTTTTCCCCTCCTTCCCTTCCTCCCTCCCTCCCT
CCTTCCCTCCCTGTCCTCCTCTCAATACAGAGGGCGTCAAAATCGCCGTC
ACGGACGCAGAGGCCAAGCAGCAGGCCGAGCAAGGAGGAGGGGGGGGGGT
ATCCTCCTCCCTCGACTTGGAGAGCCGGTGCGAGTCCATCATTGCCTCCC
TCCCTCCCCCCGCGTCGCTGGTCGGCTTTGCCCTCCAGCCCGTGGATTTC
GACAAGGACGTGGATGCGCACATGTGAGAAAAGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGAGGGAAGGAGCGAGGGGGATTGGGAAAGCGAAAGTGAC
ATCCAATTGCGTTTTGCACATGTCAACACGCTTTCTCATCTCCCTCCCTC
CCTCTTTCCCTCCCTCCCTCCCTTCAGGCTGGTGGTGACGGCGACGAGTA
ACCTCCGGGCTGCCAACTACAAAATTCCCGGTAGGGAGGGAGAGGGAGAG
GGATAGAAGGAGGGAGGGAGGGAGGGGAAGAAGGAAGAAGATTAAGGGGG
AGGCATTGCCTCAGAAGGTACACTTCCTAAACGTCCCTCCCTTCCTCCCT
CCCTCCCTCTCCTCCAGAGGCGGACATGCACAAGACGCGCCAAATCGCGG
GGAAGATCATTCCCGCCATCGCCACCACCACTGCTCTCGTCACAGGCCTC
GTCTGCCTTGAGCTCTACAAGCTCGGTGAGCCCCCTCCCTCCGTTCCTCC
TTCCCTCCTTCCTTCCCTCCCTAACGGGAAGTTGGTAGCTGGCGTCCTTC
TTTCTTTCCCTCCTTCCCTTCCTCATTTCACCACACGCTTTTCCATCTCA
TTCTCTCTGTCTTCCTTCCCGTCCTTCCTCTCCCCTTCCCTCCCTCCTTC
CAGTCCTCAAGAAACCTATAGAGGCACATAAGTCTGCTTTCATCAACCTC
GCCCTCCCTCTCTTCACCTTTTCGGAGCCCCAGCCACCCGCCAGCCAGAA
GGCGGTGGTGAAGGGAGAGGAATGGAAGTGGAGCGCATGGGACAGGATCG
ACATCGAAGGTAGGGAGGGGGGGGCACGTGCGCATGTGTACGTGTATGCA
TGTGCATGTCCTTGGGATTTAAAGAAGCCTTGTGTGCGCCTGTGAGGGGG
CGGTTGTGGTGGCAGTAGCGGAGTGGGTGGATAGGATCTACATCGGAAGT
AGGTAGGAAAGAAGAGAACTATTAACAAAACAAAACGCGGACGTTTGCCC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCGATGAAATAGTAAATCAAACGT
AAGACAAGAGGAAAACAAAATATAACGCCCATTTTAATTTAAATTAAAAA
TACATCAAAAAACAGGTGACCTGACCCTCCGTGAATTCTTGACTTACATG
GAAGAGCAATTCGGGCTGGAAGTGAGCATGCTTTCGCACGGGGTCTCGCT
CCTCTACTCCTCCCTCACCAGCAAGAAGAACATTGAGCTCCGGATGCCCA
TGCGCCTGAGCGAGGTGGTTGCGACCGTGACGAAAAAGCCTCTTTCGGAA
GGGAAGAAGTTTTTGATTCTGGAGGTTATTTGCATGGACGCGGAGACAAT
GGACGATGTGGAGGTGCCTTACGTCAGGCTGAGGATCAAGTAA
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Coding sequence (CDS) from alignment at chr12:246277..248019+

>NO12G00700.1 ID=NO12G00700.1|Name=NO12G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at chr12:246277..248019+ (Nannochloropsis oceanica)
ATGGTGCCCGATTTTTCTCCGCAAGAGGGCGTCAAAATCGCCGTCACGGA
CGCAGAGGCCAAGCAGCAGGCCGAGCAAGGAGGAGGGGGGGGGGTATCCT
CCTCCCTCGACTTGGAGAGCCGGTGCGAGTCCATCATTGCCTCCCTCCCT
CCCCCCGCGTCGCTGGTCGGCTTTGCCCTCCAGCCCGTGGATTTCGACAA
GGACGTGGATGCGCACATGCTGGTGGTGACGGCGACGAGTAACCTCCGGG
CTGCCAACTACAAAATTCCCGAGGCGGACATGCACAAGACGCGCCAAATC
GCGGGGAAGATCATTCCCGCCATCGCCACCACCACTGCTCTCGTCACAGG
CCTCGTCTGCCTTGAGCTCTACAAGCTCGTCCTCAAGAAACCTATAGAGG
CACATAAGTCTGCTTTCATCAACCTCGCCCTCCCTCTCTTCACCTTTTCG
GAGCCCCAGCCACCCGCCAGCCAGAAGGCGGTGGTGAAGGGAGAGGAATG
GAAGTGGAGCGCATGGGACAGGATCGACATCGAAGGTGACCTGACCCTCC
GTGAATTCTTGACTTACATGGAAGAGCAATTCGGGCTGGAAGTGAGCATG
CTTTCGCACGGGGTCTCGCTCCTCTACTCCTCCCTCACCAGCAAGAAGAA
CATTGAGCTCCGGATGCCCATGCGCCTGAGCGAGGTGGTTGCGACCGTGA
CGAAAAAGCCTCTTTCGGAAGGGAAGAAGTTTTTGATTCTGGAGGTTATT
TGCATGGACGCGGAGACAATGGACGATGTGGAGGTGCCTTACGTCAGGCT
GAGGATCAAGTAA
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Synonyms
Publications