NO12G00350, NO12G00350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G00350 vs. NCBI_GenBank
Match: EWM25987.1 (hypothetical protein Naga_100151g10 [Nannochloropsis gaditana]) HSP 1 Score: 424.1 bits (1089), Expect = 4.700e-115 Identity = 203/248 (81.85%), Postives = 225/248 (90.73%), Query Frame = 0 Query: 122 SSPLRNRTAEWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRPPLEIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTVGEE 370 S+ RNRT+EWEEDAAWLTNQVL YQAH+ALS+EALGKRHAVVG TPFD+GFKHEEKYRPPLEI +ASP PY+CRIHGEV++GAKLVAPCLCRGTGKWMWFADMNRRRRRDP+SSR CGTCHA+IDYQAYQ+FGS L +LVSWPLDHA FR +LLA + SS LF+ P+S+LVIR+LTSSLFWRQHSLWARV+YGPLPLKIVMYKYVGQLLWSYFL+ E AVRETLAEAES+LLERALPVTV E Sbjct: 188 STSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYRPPLEIVEASPLHPYECRIHGEVDLGAKLVAPCLCRGTGKWMWFADMNRRRRRDPLSSRECGTCHAKIDYQAYQRFGSVLAQLVSWPLDHALTFRCLLLASFVFSS-VLFVQPLSILVIRVLTSSLFWRQHSLWARVVYGPLPLKIVMYKYVGQLLWSYFLRAEGAVRETLAEAESILLERALPVTVVAE 434
BLAST of NO12G00350 vs. NCBI_GenBank
Match: CBJ27241.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 133.7 bits (335), Expect = 1.300e-27 Identity = 79/236 (33.47%), Postives = 128/236 (54.24%), Query Frame = 0 Query: 133 EEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRPP--LEIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTV 367 E+ W+ +Q+ +YQ AL S L ++ G+K E P L A ++ + DCR++ E EVG K+VAPC C+GT KW+ F+ +N RR++ + C TC IDY Y+ +G K VS L+++ A R V + V+ + +L + VL++R+LTS + W+ + ++ PLPL+I+ +++ L +E VR++L + ES +LE LPVTV Sbjct: 44 EKAVEWMMHQLCMYQTRTALISNPLAEK-----------GYKLREIVPSPRGLLCAVSTEERRMDCRMYVEAEVGKKVVAPCKCKGTQKWISFSALNSERRKEAAKWKNCPTCQGPIDYALYEAYGGGAGKAVSAILNNSRATR-VAIGVLATMVLWLLSPLLHVLIVRVLTSGVLWKNYHRLTFIVNLPLPLQIMGIRFLMTWTNDQLLLVESMVRQSLTDIESRILESRLPVTV 267
BLAST of NO12G00350 vs. NCBI_GenBank
Match: XP_005854849.1 (adhesin-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21516.1 adhesin-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20 Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0 Query: 122 SSPLRNRTAEWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYR 181 S+ RNRT+EWEEDAAWLTNQVL YQAH+ALS+EALGKRHAVVG TPFD+GFKHEEKYR Sbjct: 120 STSPRNRTSEWEEDAAWLTNQVLTYQAHMALSAEALGKRHAVVGHTPFDFGFKHEEKYR 178
BLAST of NO12G00350 vs. NCBI_GenBank
Match: CEM11818.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 92.4 bits (228), Expect = 3.200e-15 Identity = 56/181 (30.94%), Postives = 94/181 (51.93%), Query Frame = 0 Query: 184 EIAQASPSQPYDCRIHGEVEVGAKLVAPCLCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSSFFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPV 365 E A ++ S P C I+ E E G K+ P +GT KW+ F+ +N+ RR+DP R +D+ + S+ VS LD +P L+ + ++ + + + +++RLL S L+WR + LW+R +Y P KI++ ++V + D VR+ L + ES LL+ +LPV Sbjct: 188 EFALSTASSPKSCLINIEAEEGTKVAGP---KGTDKWVTFSQLNKYRRKDPQKLRDLWYGQYDVDFGPINELASTQALAVSAMLD-SPVLIPSLVILSIAGALGVSAGALWAVLVRLLNSHLWWRSYGLWSRFLYVSAPFKILLGRWVYSSCRDVVKALADVVRDRLLDLESHLLQASLPV 364
BLAST of NO12G00350 vs. NCBI_GenBank
Match: OEU11644.1 (hypothetical protein FRACYDRAFT_270650 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 75.5 bits (184), Expect = 4.100e-10 Identity = 65/254 (25.59%), Postives = 106/254 (41.73%), Query Frame = 0 Query: 131 EWEEDAAWLTNQVLIYQAHLALSSEALGKRHAVVGPTPFDYGFKHEEKYRP---PLEIAQASPSQPYDCRIHGEVEVGAKLVAPC-LCRGTGKWMWFADMNRRRRRDPVSSRVCGTCHARIDYQAYQQFGSSLTKLVSWPLDHAPAFRGVLLAVILSSS-------------FFLFLDPVSVLVIRLLTSSLFWRQHSLWARVIYGPLPLKIVMYKYVGQLLWSYFLKMEDAVRETLAEAESVLLERALPVTVG 368 E+++ A+ Q ++ Q SEAL R P+ D + K +P + A ++ P C I E EVG+KL+ P L T KW+ ++NR RR DP + Y S + + L +GV L +L S + + + +V R L S W + + WAR ++ LP K+V+++ V F K+ ++ L + E +LE +P+TVG Sbjct: 172 EYDKLLAYRMKQQVLLQLRATALSEALVARGLPGIPSLRDVS-TLDGKLKPKKVDWDCALSTEEDPKHCLISYEPEVGSKLIVPMELAGDTDKWITLRELNRLRREDPSKVEPMWS-------DKYAVLSSWFSPQSRYSLLQHVGLKGVFLNTLLEGSTLSVVVGVLLVMGIIICMPVIEYIVGRFLVSGYLWMKWASWARFVHVGLPFKLVIFQIVFGQASKLFAKLVSLAKDNLVKLECKILEETIPLTVG 417 The following BLAST results are available for this feature:
BLAST of NO12G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00350 ID=NO12G00350|Name=NO12G00350|organism=Nannochloropsis oceanica|type=gene|length=2344bpback to top protein sequence of NO12G00350.1 >NO12G00350.1-protein ID=NO12G00350.1-protein|Name=NO12G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bpback to top Synonyms
Publications
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