NO12G00100.1, NO12G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00100.1
Unique NameNO12G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr12:22786..23253 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:22786..23253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00100.1 vs.
Match: EWM21429.1 (hypothetical protein Naga_100147g10 [Nannochloropsis gaditana])

HSP 1 Score: 123.6 bits (309), Expect = 4.800e-25
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 0 
Query:    6 LPSLLVLALCASNAAA-GYTKTVNASTYALTTYDAAADKPLQVKPNTVY--TIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY--GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS 143
            L +LL+L LC +  AA GY +T++A+ Y    ++A+   PL+VKP  VY  +     D+D+ + IQCPQPK  + +KKGF+TYLSY   F D+ + VY  GD  +D QG ++SA  +PGYGS L LFC+NG LT  FNYEG+
Sbjct:   65 LATLLLLGLCTTQVAARGYMRTMDAAAYVRDDFNASVAMPLRVKPGRVYEFSTPADTDDDHFVNIQCPQPK--KTQKKGFLTYLSYVNSFPDTPVYVYQLGDDYNDNQGAMYSARDEPGYGSLLPLFCSNGVLTVAFNYEGT 204
The following BLAST results are available for this feature:
BLAST of NO12G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21429.14.800e-2547.89hypothetical protein Naga_100147g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00100NO12G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00100.1NO12G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00100.1.cds1NO12G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00100.1 ID=NO12G00100.1|Name=NO12G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
TCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTCGGCTTTAATTATGAAGGCTCATGATAGCGTGTCGTACTGAATATT
ATGATTGAATGACCGGAC
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protein sequence of NO12G00100.1

>NO12G00100.1-protein ID=NO12G00100.1-protein|Name=NO12G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MFIKKLPSLLVLALCASNAAAGYTKTVNASTYALTTYDAAADKPLQVKPN
TVYTIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY
GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS*
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mRNA from alignment at chr12:22786..23253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00100.1 ID=NO12G00100.1|Name=NO12G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at chr12:22786..23253- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
TCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTCGGCTTTAATTATGAAGGCTCATGATAGCGTGTCGTACTGAATATT
ATGATTGAATGACCGGAC
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Coding sequence (CDS) from alignment at chr12:22786..23253-

>NO12G00100.1 ID=NO12G00100.1|Name=NO12G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at chr12:22786..23253- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
TCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTCGGCTTTAATTATGAAGGCTCATGA
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Synonyms
Publications