NO12G00100, NO12G00100 (gene) Nannochloropsis oceanica

Overview
NameNO12G00100
Unique NameNO12G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr12:22786..23253 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:22786..23253 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO12G00100 vs. NCBI_GenBank
Match: EWM21429.1 (hypothetical protein Naga_100147g10 [Nannochloropsis gaditana])

HSP 1 Score: 123.6 bits (309), Expect = 4.800e-25
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 0 
Query:    6 LPSLLVLALCASNAAA-GYTKTVNASTYALTTYDAAADKPLQVKPNTVY--TIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY--GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS 143
            L +LL+L LC +  AA GY +T++A+ Y    ++A+   PL+VKP  VY  +     D+D+ + IQCPQPK  + +KKGF+TYLSY   F D+ + VY  GD  +D QG ++SA  +PGYGS L LFC+NG LT  FNYEG+
Sbjct:   65 LATLLLLGLCTTQVAARGYMRTMDAAAYVRDDFNASVAMPLRVKPGRVYEFSTPADTDDDHFVNIQCPQPK--KTQKKGFLTYLSYVNSFPDTPVYVYQLGDDYNDNQGAMYSARDEPGYGSLLPLFCSNGVLTVAFNYEGT 204
The following BLAST results are available for this feature:
BLAST of NO12G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21429.14.800e-2547.89hypothetical protein Naga_100147g10 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00100.1NO12G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|316241gene_10067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00100.1NO12G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00100 ID=NO12G00100|Name=NO12G00100|organism=Nannochloropsis oceanica|type=gene|length=468bp
ATGTTCATCAAGAAGCTGCCCTCGCTCCTTGTGCTTGCTTTATGCGCCAG
TAATGCGGCCGCCGGTTACACCAAGACGGTCAACGCCTCCACCTACGCTC
TGACAACGTATGATGCCGCCGCTGACAAGCCCCTCCAGGTGAAGCCCAAC
ACCGTCTACACCATCGACAAGTTTCTCGACGAAGACTACCACATTGTAAT
TCAGTGCCCGCAGCCCAAGAATGGTCGCATGAAGAAGAAGGGTTTCATCA
CCTATTTGAGCTATTACGAAGGCTTTAATGACAGTGGTCTCGAAGTCTAT
GGGGACGGCAGCGACGATGTACAAGGTGAAATATGGAGTGCCGTTGGTGA
TCCTGGGTACGGATCTTTCCTTGCGCTGTTCTGCACCAATGGCAAGCTTA
CCTTCGGCTTTAATTATGAAGGCTCATGATAGCGTGTCGTACTGAATATT
ATGATTGAATGACCGGAC
back to top

protein sequence of NO12G00100.1

>NO12G00100.1-protein ID=NO12G00100.1-protein|Name=NO12G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MFIKKLPSLLVLALCASNAAAGYTKTVNASTYALTTYDAAADKPLQVKPN
TVYTIDKFLDEDYHIVIQCPQPKNGRMKKKGFITYLSYYEGFNDSGLEVY
GDGSDDVQGEIWSAVGDPGYGSFLALFCTNGKLTFGFNYEGS*
back to top
Synonyms
Publications