NO12G00030, NO12G00030 (gene) Nannochloropsis oceanica

Overview
NameNO12G00030
Unique NameNO12G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length850
Alignment locationchr12:2845..3694 -

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Properties
Property NameValue
DescriptionPeroxiredoxin 5, atypical 2-Cys peroxiredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:2845..3694 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR037944PRX5-like
IPR013740Redoxin
Homology
BLAST of NO12G00030 vs. NCBI_GenBank
Match: XP_005852718.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >EKU23114.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >EWM26023.1 peroxiredoxin-2e- chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 285.0 bits (728), Expect = 1.500e-73
Identity = 136/165 (82.42%), Postives = 152/165 (92.12%), Query Frame = 0
Query:    1 MTKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDLE 166
            M KIAEG +LPL++I FK+LK+G ATD+TGTDLF  GKKVVLFGVPGAFTPTCTNTHAPEYLA Y++FKAKGVDAIYC ASNDCFVTSAWAKSL+AG+K++ILADGDC FAKL+GLTVET GFGGLRLSRFSAL+EDG V KLHLEEGGGY+G SGA+QMLKDLE
Sbjct:    1 MAKIAEGQTLPLEKITFKVLKDGKATDLTGTDLF-KGKKVVLFGVPGAFTPTCTNTHAPEYLAMYESFKAKGVDAIYCIASNDCFVTSAWAKSLDAGDKVSILADGDCGFAKLVGLTVETGGFGGLRLSRFSALVEDGSVKKLHLEEGGGYTGVSGAEQMLKDLE 164          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: XP_005704203.1 (peroxiredoxin (alkyl hydroperoxide reductase subunit C) [Galdieria sulphuraria] >EME27683.1 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [Galdieria sulphuraria])

HSP 1 Score: 164.5 bits (415), Expect = 2.900e-37
Identity = 83/163 (50.92%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    2 TKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            T + EG  + L  +KF+IL+EG    +T   +F SGKKVVLFG+PGAFTPTC+  H P +  K D  K+KGVD + C A ND FV   WA+S     K+ +LADG     K +GL ++T  FGG+R  RFS+LI++ VV K+HLEEG G+SGAS A+ +LKDL
Sbjct:   29 TMLKEGSRI-LSDLKFQILQEGKPQVITSDQVF-SGKKVVLFGLPGAFTPTCSRQHLPGFGQKVDEIKSKGVDTVACLAVNDPFVLQQWAESQGVAGKILMLADGGAQSVKKLGLDIDTGDFGGIRCRRFSSLIDNFVVKKIHLEEGTGFSGASSAETILKDL 189          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_013420812.1 (peroxiredoxin [Rhodomicrobium vannielii] >ADP72453.1 Redoxin domain protein [Rhodomicrobium vannielii ATCC 17100])

HSP 1 Score: 162.2 bits (409), Expect = 1.400e-36
Identity = 86/162 (53.09%), Postives = 105/162 (64.81%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFG-GLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            IA G  LP    KFKI+      DV+  +LFG GKK VLF VPGAFTPTC+  H P ++   D FKAKGVD + C A ND FV  AWAKS  AG+K+  LADG   FAK +GL ++  GFG GLR  R++ L+EDGVV  LH+EE    + AS AD++L DL
Sbjct:    3 IAPGTHLP--NAKFKIMTANGPADVSTDELFG-GKKAVLFAVPGAFTPTCSLAHLPGFIEHADDFKAKGVDVVACTAVNDVFVLDAWAKSTGAGDKIVFLADGSGDFAKAIGLDLDAGGFGLGLRSKRYAMLLEDGVVKALHVEENPSVAEASSADRLLADL 161          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_037232978.1 (peroxiredoxin [Rhodomicrobium udaipurense] >KAI96183.1 alkyl hydroperoxide reductase [Rhodomicrobium udaipurense JA643])

HSP 1 Score: 161.0 bits (406), Expect = 3.200e-36
Identity = 86/162 (53.09%), Postives = 104/162 (64.20%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFG-GLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            IA G  LP    KFKI+      DV+  +LFG GKK VLF VPGAFTPTC+  H P ++   D FKAKGVD + C A ND FV  AWAKS  AGEK+  LADG   FAK +GL ++   FG GLR  R++ L+EDGVV  LH+EE    + AS AD++L DL
Sbjct:    3 IAPGTHLP--HAKFKIMTATGPADVSADELFG-GKKAVLFAVPGAFTPTCSLAHLPGFIEHADDFKAKGVDVVACTAVNDVFVLDAWAKSTGAGEKIVFLADGSGDFAKTIGLDLDAGAFGLGLRSKRYAMLLEDGVVKALHVEENPSVAEASSADRLLADL 161          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: CBN78919.1 (Peroxyredoxin [Ectocarpus siliculosus])

HSP 1 Score: 157.1 bits (396), Expect = 4.600e-35
Identity = 77/161 (47.83%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            I EG   P+D   F+I  +    DV  +++F +GKKVV+ GVPGAFTPTC + H P ++A  D FK KGVD + C + ND FV S W KSL+A +K+T+LADG   FA+  GL V+T  FGG RL R + ++ DG + KL LE+G GY+  S  D +L  L
Sbjct:   47 IKEGDKFPMDS-TFQIKGDAGPADVPASEIF-AGKKVVICGVPGAFTPTCDDNHLPSFIANADKFKEKGVDTVACMSVNDAFVMSRWIKSLDAEDKVTMLADGGAVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDVSSGDTVLAAL 205          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: CAQ52405.1 (peroxyredoxin [Laminaria digitata])

HSP 1 Score: 155.6 bits (392), Expect = 1.300e-34
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            I EG   P     F+IL +G   DV   D+F +GKKVV+ GVPGAFTPTC++ H P ++A  D FKAKGVD + C + ND FV S W KSL+A +K+T+LADG   FA+  GL V+T  FGG RL R + ++ DG + KL LE+G GY+  S    +L  L
Sbjct:    3 IKEGDKFPAG-TSFQILGDGGPADVPAADVF-AGKKVVICGVPGAFTPTCSDDHLPSFIALADEFKAKGVDTVACLSVNDAFVMSRWIKSLDAADKVTMLADGGGVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDLSSGAGVLAAL 161          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_054360423.1 (peroxiredoxin [Prosthecomicrobium hirschii] >KPL54255.1 alkyl hydroperoxide reductase [Prosthecomicrobium hirschii])

HSP 1 Score: 151.0 bits (380), Expect = 3.300e-33
Identity = 81/161 (50.31%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            IA G +LP  + KF+I+ +  A D T  ++F  G+KVVLFGVPGAFTPTC+  H P +L   D FKAKGVD I   A ND FV +AWA+   A +K+  LADG+  F K +GL +E  G  GLR  RFS ++EDGVVT L++E+  G + ASGA ++L+ L
Sbjct:    3 IAVGSALP--EAKFRIMTDEGAVDRTSDEIF-KGRKVVLFGVPGAFTPTCSMNHLPGFLDNLDHFKAKGVDEIAVVAVNDPFVMAAWARHTGAKDKILFLADGNADFTKKLGLEIEL-GVMGLRSKRFSMIVEDGVVTALNVEDSPGTAEASGAARLLQQL 159          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_008171864.1 (peroxiredoxin [Pseudoalteromonas sp. BSi20652] >GAA61619.1 peroxiredoxin-2E-1, chloroplastic [Pseudoalteromonas sp. BSi20652])

HSP 1 Score: 149.4 bits (376), Expect = 9.600e-33
Identity = 77/161 (47.83%), Postives = 109/161 (67.70%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            I +G +LP  ++    L +     +T  +LF  GKKVVLF VPGAFTPTC+N H PE++   D  KAKGVDAIYC + ND FV  AW  S NA +++++LADGD +F+K +GL  +T GFGG+R SR++ +I++ VVT L +EEG  ++  S A+ +L+ L
Sbjct:    2 IEQGQNLP--EVALTQLTDEGMQTLTNKELF-DGKKVVLFAVPGAFTPTCSNAHLPEFITLADKIKAKGVDAIYCVSVNDAFVMKAWGDSQNA-QEISMLADGDASFSKALGLDKDTAGFGGIRSSRYAMIIDNAVVTGLFVEEGKEFA-VSRAEAVLEKL 157          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_099034797.1 (peroxiredoxin [Lacimicrobium alkaliphilum])

HSP 1 Score: 149.1 bits (375), Expect = 1.200e-32
Identity = 77/161 (47.83%), Postives = 105/161 (65.22%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            I  G SLP   +KF +  +G + + +  DLF +GKKVVLF VPG FTPTC+ +H P Y+   D  KA+GVD + C A +D FV  AW+K  NAGE + +LADGD +FAK +G+ ++T  FGG+R  R+S L+ DG V K++LEE G +   S A  ML+ L
Sbjct:    2 IQPGQSLP--DMKFSLRVDGESKEASTADLF-AGKKVVLFAVPGPFTPTCSESHLPGYVTLADKIKAEGVDTVICTAVSDAFVMEAWSKDQNAGE-LLMLADGDASFAKALGMDMDTGAFGGVRSKRYSMLVVDGKVEKVNLEEPGKFE-VSDAQTMLEQL 157          
BLAST of NO12G00030 vs. NCBI_GenBank
Match: WP_062475661.1 (peroxiredoxin [Lacimicrobium alkaliphilum] >ALS97145.1 peroxiredoxin [Lacimicrobium alkaliphilum])

HSP 1 Score: 148.3 bits (373), Expect = 2.100e-32
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 0
Query:    4 IAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFTPTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKMTILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGGYSGASGADQMLKDL 165
            I  G SLP   +KF + + G   +V+  DLF +GKKVVLF VPG FTPTC+  H P Y+A  D  K KG D+I C A +D FV  AW+K  NA E + +LADGD +FAK +G+ ++T  FGG+R  R+S L+ DG V K++LEE G +   S A  ML+ L
Sbjct:    2 IQPGQSLP--DMKFSLRENGEGKEVSTADLF-AGKKVVLFAVPGPFTPTCSEAHVPGYVALADKLKEKGADSIICTAVSDAFVMEAWSKDQNASE-LLMLADGDASFAKALGMDMDTGTFGGIRSKRYSMLVVDGKVEKVNLEEPGKFE-VSDAQTMLEQL 157          
The following BLAST results are available for this feature:
BLAST of NO12G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852718.11.500e-7382.42peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
XP_005704203.12.900e-3750.92peroxiredoxin (alkyl hydroperoxide reductase subun... [more]
WP_013420812.11.400e-3653.09peroxiredoxin [Rhodomicrobium vannielii] >ADP72453... [more]
WP_037232978.13.200e-3653.09peroxiredoxin [Rhodomicrobium udaipurense] >KAI961... [more]
CBN78919.14.600e-3547.83Peroxyredoxin [Ectocarpus siliculosus][more]
CAQ52405.11.300e-3449.07peroxyredoxin [Laminaria digitata][more]
WP_054360423.13.300e-3350.31peroxiredoxin [Prosthecomicrobium hirschii] >KPL54... [more]
WP_008171864.19.600e-3347.83peroxiredoxin [Pseudoalteromonas sp. BSi20652] >GA... [more]
WP_099034797.11.200e-3247.83peroxiredoxin [Lacimicrobium alkaliphilum][more]
WP_062475661.12.100e-3248.45peroxiredoxin [Lacimicrobium alkaliphilum] >ALS971... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009888NSK009888Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00030.1NO12G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00030.1NO12G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00030 ID=NO12G00030|Name=NO12G00030|organism=Nannochloropsis oceanica|type=gene|length=850bp
ATGACCAAGATTGCGGAAGGTCACTCCCTGCCTCTCGACCAGATCAAGTT
TAAGATACTCAAGGAGGGAAACGCTACGGATGTGACGGGCACAGACTTGT
TCGGGTCGGGTAAGAAGGTTGTGCTCTTTGGCGTACCGGGTGCCTTTACT
CCCACGTGgtgagtgcttgtaccagagagaaaatgcttcgaagcggtggt
gtcctggggaaagaaattagatgctagaaggcaaggggaggatagtaggg
cgcggtgtgtaggatagctttctcacgaaaagtttcttacccgcactttc
tttttcgtcctacttgccgcccgaaccctccaccctacccacccatctcc
agCACCAATACCCATGCCCCGGAGTACCTTGCCAAATACGATGCTTTCAA
GGCCAAGgtagaacaaagtgtccttgtcccaatgacccggaaccgcccaa
aatgcctcctcttctttccatccttcgatttttatgcctcctccctccca
ccgcatcctcgctccttaatcacttatcttacaacgctctttctaccttt
cgttcccactcccagGGCGTCGACGCCATCTACTGCGCGGCGAGCAACGA
CTGCTTTGTCACTTCCGCCTGGGCTAAGAGTCTTAACGCCGGTGAGAAGA
TGACGATCCTCGCAGATGGTGATTGCGCGTTTGCCAAACTCATGGGGCTG
ACTGTGGAGACGGAAGGGTTTGGAGGGCTGCGTTTGAGCCGTTTCTCGGC
TTTAATAGAGGATGGTGTGGTGACAAAGCTGCATTTGGAGGAGGGCGGAG
GATACTCGGGCGCGAGTGGGGCAGACCAGATGCTGAAAGACTTGGAGTAG
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protein sequence of NO12G00030.1

>NO12G00030.1-protein ID=NO12G00030.1-protein|Name=NO12G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTKIAEGHSLPLDQIKFKILKEGNATDVTGTDLFGSGKKVVLFGVPGAFT
PTCTNTHAPEYLAKYDAFKAKGVDAIYCAASNDCFVTSAWAKSLNAGEKM
TILADGDCAFAKLMGLTVETEGFGGLRLSRFSALIEDGVVTKLHLEEGGG
YSGASGADQMLKDLE*
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Synonyms
Publications