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Properties
| Property Name | Value |
|---|
| Description | Zn(2)-C6 fungal-type DNA-binding domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:1103264..1109324 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0009058 | biosynthetic process |
| GO:0006139 | nucleobase-containing compound metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
| GO:0005488 | binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR036864 | Zn2-C6_fun-type_DNA-bd_sf |
| IPR001138 | Zn2-C6_fun-type_DNA-bd |
Homology
BLAST of NO11G03440 vs. NCBI_GenBank
Match: EWM24849.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 203.4 bits (516), Expect = 4.000e-48 Identity = 109/182 (59.89%), Postives = 131/182 (71.98%), Query Frame = 0
Query: 1 MAPTVTTGIAALSLIDGMACERCKEDKTKCSRHWPCARCIRLKTSCALSHRRLSALIE----HNRRRFL----HVKGGEG-----GWNVGLGRGVLVAARERTLLALLQCEAGGMRAAAAMVVAFLRLQQDGRVYRDRAVNTLHLWHREIRRVGTDVTLGAFEQISRAMNVDTAEKLEIMDV 170
MAP +T G ALSL+DG+ CE CK DKTKCSRHWPCARCIRLK C LS RR+S L++ + R H +G G G +GL + VL AAR+ LL++LQC AGGMRAAAA+VVAF RL DGRV RDRA+NTLHLWHREIRR+GTDVTLGAFEQI RA+ + E+ EI+++
Sbjct: 1 MAPVITAGSTALSLLDGLTCECCKRDKTKCSRHWPCARCIRLKQPCVLSQRRVSRLLQSGACFSTSRLQPPPPHDQGVGGRFTSAGRGMGLDKQVLAAARDNRLLSILQCHAGGMRAAAALVVAFHRLLADGRVNRDRAINTLHLWHREIRRIGTDVTLGAFEQICRALQLRAGERNEILEL 182
BLAST of NO11G03440 vs. NCBI_GenBank
Match: EWM22836.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 76.3 bits (186), Expect = 7.300e-10 Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 489 LNEVFEATFVSDREWASLEET-TRVASSFLYSGMVVPSDQGEFMDCLVHVLFGRAFTATALVHAFTRDLTPFLALLRVSLL-PFPELSRMAECLSLRPAPACKRIREVPGKQ------PGILSAMGSSTT 611
L FE F++ EW L + V +L + +VV D+ +F D + + FG+A A+AL+ F +D+ PFLA+LR++LL P E + + E L+LR +P K +RE PG++ PG+ S++ ++T
Sbjct: 356 LGRHFERNFLTRAEWEGLMTSGPPVLVPYLVASLVVGGDREDFFDVVADLYFGKALQASALLKVFDKDMRPFLAVLRLALLPPTEEGAGLVEVLTLRRSPCSKHLREQPGQRGGGSPSPGLASSLSVAST 485
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G03440 ID=NO11G03440|Name=NO11G03440|organism=Nannochloropsis oceanica|type=gene|length=6061bp
ATGGCACCGACCGTCACAACGGGCATCGCCGCCCTTTCCCTCATTGATGG
CATGGCATGTGAGAGATGCAAGGAAGACAAGgtaagaccagacgccaaag
taatggagcgcgagagggacaaggtcaatacgggtgaccatccacaggca
tgcatggacttatcactccctcttggcgttccacccttcctccctccccc
cttgcagACCAAATGCAGTCGTCATTGGCCTTGCGCCgtaagtaccttct
ccgggggcttgccgtgttctcagctgcatgtcctttgcttcctttccttg
ctacctctgtgtctcaaaattgcctccctcacttcctgtcctgttgtttt
tccgttgtgcgccacctgctccctgcctggaccctgacctcttccgaatt
ctccgtggccccttgcccctccctcattcccctcctccctctttccactc
tcgcgccctgccatgacaagtcatccgcgatccgagtgccctccgcattc
aatctatcttgtactgcatacactcctcgtcctcatccccgcatggctct
caccctttccccttcgtccttccctaccacatcctttgtctccacactcc
tgacgaaacctgcccagCGATGCATCCGTCTGAAAACGAGCTGTGCCCTG
TCCCACCGGCGGCTGAGCGCCCTCATCGAGCATAATAGAAGGAGATTTCT
ACATGTAAAAGGGGGGGAGGGGGGGTGGAACGTGGGGTTAGGCAGGGGCG
TGCTGGTGGCGGCGAGGGAGAGGACGCTCTTGGCGCTGCTGCAGTGCGAG
GCGGGAGGTATGCGAGCGGCGGCAGCGATGGTGGTGGCCTTCCTGAGGCT
CCAGCAGGATGGCCGGGTCTATCGGGATCGTGCGGTCAACACACTgtgag
tggagagagcagggaagggagggagggagggagggagcccgggcggtctt
ggcgtggttgtctggatgcgtagatgtgccacccgcatgcatacacgctg
ggattcattccgggtgtatctgacctatctggggatttttccggttcata
atagGCATCTGTGGCACCGCGAGATCAGGCGGGTGGGGACGGACGTGACG
CTCGGGGCGTTTGAGgtgaggaaggagggagggagggagggagggaggga
gggagggagggagggagagggtaggaattgattcatggtcgtctctcgat
catgcttgctgcctgtaattgacgcccttcttttggcaatacctccctgc
tcgtccgcactctcttcctgcctccctccccagCAAATCAGCCGAGCAAT
GAATGTGGACACAGCCGAGAAGTTGGAGATTATGGACGTTGCCTCTATCT
CGCCCTCCCTCCCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTGCCGGGCTCTTTCCACCTCTCTACCTCCTCGGATGCCGGTCTGTCCGA
CCCACCACCATCATCACAGGTGCCATCACCATCAACATCGTCAGTCTTAC
CATCAGCAGCACCACAACCACCACCCCAAGCACCCCTAGCATGGCTATCA
TTACCACCACCACCGCGACAACAACCATCAATCTCGCCACCACCACCATC
TCTACCACCCCAACCACCATCATTAATGCCATTCGTCCTTGGAGGACGGA
GAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGA
GGGGGAGGAGGAGGAGGAGGAGGGGGGGGAGGAGGGGGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGTGAAGGTGC
CGCAACCAGCACCGGTAGCCACCCCCTCCTGGGAGCCTCCTCGCACCTGG
AGAGGACGACGGCGATACGATTCAGAGTCCTTGCAGCTTTCTCGCTTGGG
AGGGGGAGGAAGAGGAGAAGAGGGAAGATGGGAGGGAGGAAGGGAGGGAG
GGAAAGCGGACAAGGCGGTTGTGGAGATGGAGACGTTCCGAGCGATGGAC
GATAATGTGGCCACGGCTTTGATGgtgtgtctctacaccgacagcgacag
gcctaaaggggaagagaaaggaggaggaggcaggggaggagaagggaggg
agaaggggggggaggagggcggatggaagaacgacagGAAGGAGGAAGAT
CGGAACGAAGGAACGGTGGGTCGCCGCCGCCGCAGCAGCAGCAGCAGCAG
CAACAACAACAACAACAACAACACCAACAGCAGCAGCACCACCAACATCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACACCAAC
AGCAGCAGCACCACCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACACCAACAACATCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCC
GCGGGTGGGATTGAACGAAGTGTTTGAGGCCACATTCGTCTCAGACAGGG
AATGGGCGTCTCTAGAGGAGACGACACGAGTGGCCTCGTCCTTTTTGTAC
TCGGGgtgagaaaggggcagggggggagggaggggaagatggtagtctcg
ctcatggttttttaaaggtttttcgtggctggacttgattctcatctttc
tccccccctccctcccccttcctcaccgtagcccagtgggagtctttgaa
tgatgctgacctcaatccctccctccccccctccctcccccttcctcacc
gtagcccagtgggagtctttgaatgatgctgacctcaatccctccctccc
ccctccctccctcctagGATGGTCGTGCCGTCGGACCAGGGCGAGTTTAT
GGACTGCTTAGTCCACGTCCTCTTCGGCCGGGCCTTCACCGCCACCGCCC
TCGTGCACgtacgccctccttcattccctccctccctccctccctccctc
ctttctccatctcgctgagtggccacacgcctttcccctcattctccctc
cctccttccctccctcagGCCTTCACACGTGACCTCACCCCTTTTTTGGC
CCTGCTCCGCGTCTCTCTCCTCCCCTTCCCCGAGCTCTCTCGCATGGCTG
AGTGCCTCTCTCTTCGCCCTGCGCCTGCATGTAAGCGCATTCGGGAGGTG
CCAGGGAAACAGCCGGGTATCCTTTCGGCCATGGGCAGCAGCACTACCAC
GCCCACCTACATCTCGCCCTCCTCCCGCGACCCACGCGTGGTTCGGCCGG
AGGTCCATCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCACCC
CCACGGCTGGGAGGGGCAATGCCCGGTGTGGCCGGGAGGGGGGAAGGGGG
GGCAGACGGAAGAGGAGGAGGGCGGAAAAGGATGAAGGAGGAGGATGAAG
GAAACGGCGGAGGTGGAGGCGGCGGACGCGGAGAAGGAGGTGGAGAAGGA
GGAGGGAAAGGGAAGAAGCGAGCAGGCGCTTTTTCCTTGGCCTTGCCGCT
TACACATGCCCCCTTACTTTCGGCCTCAATATTCTCGCCACCGCCGCAGG
GAGGAGAAAGAGGAGGAGGAGAAGGAGGAGGAAGAGGAGGAGGAGTGTCG
ACCTCTCTTCCCTCTTCATTCCCGTCTATGTCTCAAATGCTCCGGGTTGA
GCGGGTGAGAAGAGGAGGGGGCGAGGGAAGGAGCGAGGAAGGGAGGGAGG
GAGAGTCAGCGGCGCAGATCGCCTTGTTGACTGCACGGGTGGTGGACATA
CAGCGGCAGAAACAACAACAACAGATATCGTGGGAAATGCAAGACGTGTA
TAGGCGGAGACGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GATGGGAAGAAGGAGCGGGAATGGAAAGGATCGAAGGGGGAAGAGGAGAA
GGAGAAGGACGGGGAAGAGGGTCAGCAGCTGGAGGAGGAGGAGGAGGAAG
ACTTTGCATGCCCCTGCCTTACGTGCTGCAAGGATCGCCCCGGGTGCCCC
TACCACATCAACCACTCGAAGGAGGAGGAACCGCAGCAACAACAACAACA
GCAGCACCACCACCACCACCACCACCAACGACAACAACAACAACAACAAC
AGCAGCAGCAATCACGCATGGGCCTCGTCAAATGCGGCGGCCTCCCCCTC
ATCCTCCTCCTCTGCCTTCTTCATTCCCGCGTTCTTCCCTCCTTTCTTCA
ACTTCCTTCCCACTTCCTCTACACGCGCCTCCTCCCCGCTCCTTCTATTT
ACCTTCTTCTCATCTCCATGCACAACAACAGCAACAGAAGCAGCTGCAAC
AGCAACAGCTGCCCTGCACTACTCCTCCCTCCTTCTTCCCTTCCGCCTCT
TCCTCCTTCTCGTCCCCTTCCATCGCCTCCTCCTCCTCCCTCTCTTATCA
AGCCCCCCCCCCACCAGTTCAGAGCACCCTCAGCATACTCCCACCACCAT
TTAATCGCACTGCCCCCCTTCCCGTCCCTCCTTTTCTCCCTCCCTCTTCC
TTCTCCTCGTCCTCCTCCCTCCCCTCATCCGCTTCCTTTCCGTCTACCTC
TGCTCTCGCCGCGCCGCGTCTCCCCTTCCCTTTGAACGTGAAAGGAGGAA
ACAGTGATGTGAGTACCCGACCAGGAGGGGGGAAGGGGGGGAAGGGGGGT
GGGGGGGCAGTTGACTCTCGGGCTCTGCCGATTGTCCACTCTGTCGCTCT
TCCCATGAGTGAGCCACGGGTGCAAACGATGTCAGTTATAGGAAGAGGAG
CAGCAGCTACAGCAGCAGCGGCGCCGCCGGCGGCGGCAGCGGCAGCAGGG
GGAGCCGGAGGAAGAGGAAGAGAAAGAGGAGGAGGAGAAGTCGGAAAAAA
GGAGGAGAAGTCGGAAAAGGAGGAGAAGTCGGAAAAGGAGGAGAAGTCGG
AAAAGGAGGAGAAGTAGGAGACGCAGGGGGAGAGGAGAGGAGAGATGGAC
GCTGAACGAGGAAGGGAAGAAGGAGGGATTGAGAAGGGGCAAGAGAAGCA
GGAGGGGGAGAAGTAGAAGGAGAGTAAGAAGAAGGACGACGAGGGGAAGG
AGGCATGAAAGAGGCAATCGATGCCTTGCCATGTCGCACAGGGGCGCGAA
AGGCATGAGTAGCGACGTGAGAAATGAAATGAGACAGCAATTTCGGAAAT
TATAAATCGAAATAATAGTAGGAGAGCATGTGGAAGGAAGAGCGGAGATG
CATGGCACGTACAGTGTCCAAGCTTCCCTAATTATCGCCCTTAGAAAAAT
GGAGACTCATCAAAAACCACCAAATACTACTTTCCACCTATGCCATGCCC
ACTCAAATAAAAGAGGAATGGGCGAAAACGTCCAACATATAAATGCGTAA
TACGTGTAAAGAAAGCATCAGTATGTCATATGTCTACCAAGCAGACAGCA
GCACATTTAATAAATCTAGTCCCAACTACCTCGACGGGCAGAAAGAAAAA
GGAGCAGGAGAGGACAGGGCAGATAAAACGCCAAAATATGAGCAGCAGAA
GTATCGGAGGTCAAAGGAATGACAATTTTTCCTCCCGCTCTGCTACTTAA
GATGGAGATACAACGCTTTGGATATTATTAGTAAGTTTGAAGCAGACCAG
AGGTTTTTTTGGGGGTGATATACTTAAAATTAGAAATAACAAAATAATTA
ATAATGATGATGATACCGAAAAAGAAGGAAGGAGACAACTTTATTTGTGT
CAATAAATCACCGAAAAGTAGCAGGGCACTGCTTCAATATGCTTGCCGGG
GAATAGAGAGGAAGAGGACGGATTCATATTTAGTGAGAACCCAAATATTG
GCATCCTATTGCGCGTTATTGTCTTCCCAGAAGCCATGCGGCTGTAATAC
TACATTCGCAGGCTGTCTTACCGCTTCACAACGAAAATTCTCATTACAAT
CCTCTGCCACTTATCGTGATCATGCTGAAGGAGGAAGTTCGCTGTCTCAT
ATTATAATGTCGATGCAAGAGCCACCATCGATGGAAGTAGGAAGATTTAA
AAATATTGCTATAGTTTTGGGGGATATGTGTAGAGAGTTCATTGCAAAGT
AATATAATAGGGGAAATAGAGGAAAAGCGTTTTTGAAAATCAGAAAAAAT
GTGCAAGTTTT back to topprotein sequence of NO11G03440.1 >NO11G03440.1-protein ID=NO11G03440.1-protein|Name=NO11G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1183bp
MAPTVTTGIAALSLIDGMACERCKEDKTKCSRHWPCARCIRLKTSCALSH
RRLSALIEHNRRRFLHVKGGEGGWNVGLGRGVLVAARERTLLALLQCEAG
GMRAAAAMVVAFLRLQQDGRVYRDRAVNTLHLWHREIRRVGTDVTLGAFE
QISRAMNVDTAEKLEIMDVASISPSLPPSSSSSSSSSSSLPGSFHLSTSS
DAGLSDPPPSSQVPSPSTSSVLPSAAPQPPPQAPLAWLSLPPPPRQQPSI
SPPPPSLPPQPPSLMPFVLGGRRGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGRGGGGGGGGGGGGGGGVKVPQPAPVATPSWEPPRTWRGRRRYDSESL
QLSRLGGGGRGEEGRWEGGREGGKADKAVVEMETFRAMDDNVATALMEGG
RSERRNGGSPPPQQQQQQQQQQQQQHQQQQHHQHQQQQQQQQQQQQQQQH
QQQQHHQHQQQQQQQQQQQQHQQHQQQQQQQQPPPRVGLNEVFEATFVSD
REWASLEETTRVASSFLYSGMVVPSDQGEFMDCLVHVLFGRAFTATALVH
AFTRDLTPFLALLRVSLLPFPELSRMAECLSLRPAPACKRIREVPGKQPG
ILSAMGSSTTTPTYISPSSRDPRVVRPEVHPSLPPSFPPSLPSPPRLGGA
MPGVAGRGEGGADGRGGGRKRMKEEDEGNGGGGGGGRGEGGGEGGGKGKK
RAGAFSLALPLTHAPLLSASIFSPPPQGGERGGGEGGGRGGGVSTSLPSS
FPSMSQMLRVERVRRGGGEGRSEEGREGESAAQIALLTARVVDIQRQKQQ
QQISWEMQDVYRRRREGGGGGGGGGGGGWEEGAGMERIEGGRGEGEGRGR
GSAAGGGGGGRLCMPLPYVLQGSPRVPLPHQPLEGGGTAATTTTAAPPPP
PPPTTTTTTTTAAAITHGPRQMRRPPPHPPPLPSSFPRSSLLSSTSFPLP
LHAPPPRSFYLPSSHLHAQQQQQKQLQQQQLPCTTPPSFFPSASSSFSSP
SIASSSSLSYQAPPPPVQSTLSILPPPFNRTAPLPVPPFLPPSSFSSSSS
LPSSASFPSTSALAAPRLPFPLNVKGGNSDVSTRPGGGKGGKGGGGAVDS
RALPIVHSVALPMSEPRVQTMSVIGRGAAATAAAAPPAAAAAAGGAGGRG
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