NO11G02980.1, NO11G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02980.1
Unique NameNO11G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1315
Alignment locationchr11:936900..938509 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:936900..938509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02980.1 vs.
Match: EWM24925.1 (hypothetical protein Naga_100092g11 [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 4.600e-58
Identity = 143/249 (57.43%), Postives = 171/249 (68.67%), Query Frame = 0 
Query:   26 LTSLF----LCLLMAAFW---STTLAFVPPCCHSSSGR-----RQVKATTTRMMAERFYSKWSRADFVLKSALAAAAVIPVIKGGTMARDAQATERVVLPVKNGKLATDE--DEEKDSPLAFSSAKGVPLRFPLHKSQEQALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSND-DDLYFRFGGDGGSSGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQY--YSQEFKCT 258
            +T LF    +CL +A      ST  AF P C    S       R+    TTRMMAERFY+KWSRADFVLKSALAAA +IPV+KGG +A   +A      PVK  K  +DE  DEEK +PLAFS+  GVPLR+PLHKSQ +A  ELQ+VV R+GGRL+  RG +++ + RA F  +   +L+F FGGDGGSSGYS VLQA VG  VD+MRL+NALADGLASKGWL AGFPLSCDPAM QY  +  E +CT
Sbjct:    1 MTGLFRHFSVCLYLAVLCHSVSTAFAFAPLCKSPLSATMGGTVRKGTIQTTRMMAERFYNKWSRADFVLKSALAAAGIIPVVKGGAVASKIKAEHSA--PVKTNKKHSDEKDDEEKSTPLAFST--GVPLRYPLHKSQYEARRELQDVVARVGGRLTDFRG-TKAGLFRATFDLHRLQELHFEFGGDGGSSGYSRVLQAHVGAGVDDMRLINALADGLASKGWLTAGFPLSCDPAMAQYLRHRNEGRCT 244
The following BLAST results are available for this feature:
BLAST of NO11G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24925.14.600e-5857.43hypothetical protein Naga_100092g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02980NO11G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02980.1NO11G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02980.1.cds1NO11G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02980.1.cds2NO11G02980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02980.1.cds3NO11G02980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02980.1 ID=NO11G02980.1|Name=NO11G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
CGGGCCATGTTGATGCAAACTCTCTTCGGCGAGTAAGGCTTAACATCAAC
AACGACATACCACCTCTATCTTCTGGACAAGAGTGTACGGTGATGCCATC
CTTGAGGCGTGTGTGTTTTACCTGAAGGGCGTCGATCTCTTGGACCAGAA
GGATTGCGGCCAGGAGACCCACGGGGCCCGCCCCCACAATAATGAAGTGC
CGGTCTTCGGGATGCAACTTCTGGCCTGTTGTCTCGCCCGACGTCGTCAT
GGCGTGCGTTTGTGTGTTTGCACCGGGCCTCTATGGATGTGTGTGCCGGG
TATGGACGAGCGGAGACGGGATGAAGAGCGTGAGAAGCTCAATGAATGGA
CTTGCAGGAAGCTTACTGCTGATTTGTGAGAAGGGGCTTGCAGGCTGGTG
GTGTCCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCA
CACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGT
TGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTTTGATG
GCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAG
CAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGG
AGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCA
CTGGCTGCGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCATGGCGCG
CGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAAAATGGCAAAC
TTGCCACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCT
GCCAAGGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAGAGCAAGC
CCTGTCTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGCTTGTCTA
AGGCCCGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCG
AATGACGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGG
GTATAGCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGATAATATGA
GATTGATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCG
GCGGGCTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCA
GGAGTTTAAGTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGAAATTAAT
TGACGACATGAAGGGGAAATGAAATTGTATGCTCTCAAGTCCTTCTCGCT
TCGTTTTGTTATTCC
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protein sequence of NO11G02980.1

>NO11G02980.1-protein ID=NO11G02980.1-protein|Name=NO11G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MHTRHRIHPQINIMASLTLLLSSRLLTSLFLCLLMAAFWSTTLAFVPPCC
HSSSGRRQVKATTTRMMAERFYSKWSRADFVLKSALAAAAVIPVIKGGTM
ARDAQATERVVLPVKNGKLATDEDEEKDSPLAFSSAKGVPLRFPLHKSQE
QALSELQEVVVRIGGRLSKARGGSRSDVLRAAFQSNDDDLYFRFGGDGGS
SGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQYY
SQEFKCTV*
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mRNA from alignment at chr11:936900..938509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02980.1 ID=NO11G02980.1|Name=NO11G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr11:936900..938509- (Nannochloropsis oceanica)
CGGGCCATGTTGATGCAAACTCTCTTCGGCGAGTAAGGCTTAACATCAAC
AACGACATACCACCTCTATCTTCTGGACAAGAGTGTACGGTGATGCCATC
CTTGAGGCGTGTGTGTTTTACCTGAAGGGCGTCGATCTCTTGGACCAGAA
GGATTGCGGCCAGGAGACCCACGGGGCCCGCCCCCACAATAATGAAGTGC
CGGTCTTCGGGATGCAACTTCTGGCCTGTTGTCTCGCCCGACGTCGTCAT
GGCGTGCGTTTGTGTGTTTGCACCGGGCCTCTATGGATGTGTGTGCCGGG
TATGGACGAGCGGAGACGGGATGAAGAGCGTGAGAAGCTCAATGAATGGA
CTTGCAGGAAGCTTACTGCTGATTTGTGAGAAGGGGCTTGCAGGCTGGTG
GTGTCCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCA
CACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGT
TGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTTTGATG
GCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAG
CAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGG
AGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCA
CTGGCTGCGGTACGTTGAAGTGTGGAAAGCAAGAAGGATGAAGGAAGCGA
AACAGGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAGTATGGGAAAGTTA
AATTACGCAGTACGTAGGCATCAATCATCTCACCCTTCCTCCCTCCTCTG
CATACCCTCTCTACAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCA
TGGCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAGTAC
GTGGAAGGAATAAGAGGAGGGTGGTAGGAAAAGCTTCGACGAGATAGATT
CCTTCATTATACTTGTTCTTCTAATACAGCAAAGAAAATTGTGTCAGTTT
GTCATACTCCTTTTCTTTTTCCTCCTATTGACAGAAATGGCAAACTTGCC
ACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAA
GGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAGAGCAAGCCCTGT
CTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGCTTGTCTAAGGCC
CGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAATGA
CGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATA
GCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGATAATATGAGATTG
ATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGG
CTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGT
TTAAGTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACG
ACATGAAGGGGAAATGAAATTGTATGCTCTCAAGTCCTTCTCGCTTCGTT
TTGTTATTCC
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Coding sequence (CDS) from alignment at chr11:936900..938509-

>NO11G02980.1 ID=NO11G02980.1|Name=NO11G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr11:936900..938509- (Nannochloropsis oceanica)
ATGCACACAAGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCT
CACGTTGCTCCTGTCATCCAGGCTTTTGACCTCACTTTTCCTATGCCTTT
TGATGGCTGCCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGT
CACAGCAGCAGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGAT
GGCGGAGCGATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGA
GCGCACTGGCTGCGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCATG
GCGCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAAAATGG
CAAACTTGCCACCGACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCT
CCTCTGCCAAGGGCGTGCCTCTGCGTTTCCCCCTTCACAAAAGCCAAGAG
CAAGCCCTGTCTGAGCTTCAAGAAGTGGTCGTCCGCATCGGAGGCCGCTT
GTCTAAGGCCCGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCC
AGTCGAATGACGACGATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGC
AGTGGGTATAGCAGTGTGCTGCAGGCGAGCGTGGGTAGAGATGTGGATAA
TATGAGATTGATGAATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGT
TGGCGGCGGGCTTTCCCTTATCATGTGATCCTGCGATGGGCCAGTATTAT
TCCCAGGAGTTTAAGTGCACGGTGTAG
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Synonyms
Publications