NO11G02510.1, NO11G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02510.1
Unique NameNO11G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length300
Alignment locationchr11:796984..797533 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:796984..797533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02510.1 vs.
Match: EWM24909.1 (hypothetical protein Naga_100092g1 [Nannochloropsis gaditana])

HSP 1 Score: 143.7 bits (361), Expect = 3.200e-31
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:    1 MTTTRLVRPPRLLGFGGRPYNFFERDALPQNLSSVLKGKFAAVLMVEGALIFGDDQGHITFTDADLRLSLQHRILSPPPHFLPRPILPSCLPAPGNPP 99
            M++++LVRPPRLLGFGGRPYNFF+RD+LP+NLSSVLKG  A+ L+VEGALIF DDQGHITFTDADL +SLQHRILSPP         PS  P+P NPP
Sbjct:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPP---------PSPPPSPSNPP 89
The following BLAST results are available for this feature:
BLAST of NO11G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24909.13.200e-3171.43hypothetical protein Naga_100092g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02510NO11G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02510.1NO11G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02510.1.cds1NO11G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02510.1.cds2NO11G02510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02510.1 ID=NO11G02510.1|Name=NO11G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
ATGACAACAACGCGGCTTGTGCGTCCGCCCCGCCTCCTGGGTTTTGGAGG
CCGGCCGTACAATTTCTTCGAGCGGGATGCTCTCCCGCAGAACCTTTCTT
CGGTGCTGAAAGGCAAGTTCGCCGCCGTCCTCATGGTTGAAGGCGCGCTC
ATCTTTGGAGACGACCAAGGCCATATCACCTTCACTGATGCCGACCTCCG
CCTCTCCCTCCAACACCGCATCCTATCCCCCCCCCCTCACTTCCTTCCTC
GTCCTATCCTTCCCTCCTGCTTGCCCGCTCCCGGCAATCCCCCCCCCTGA
back to top

protein sequence of NO11G02510.1

>NO11G02510.1-protein ID=NO11G02510.1-protein|Name=NO11G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MTTTRLVRPPRLLGFGGRPYNFFERDALPQNLSSVLKGKFAAVLMVEGAL
IFGDDQGHITFTDADLRLSLQHRILSPPPHFLPRPILPSCLPAPGNPPP*
back to top

mRNA from alignment at chr11:796984..797533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02510.1 ID=NO11G02510.1|Name=NO11G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=550bp|location=Sequence derived from alignment at chr11:796984..797533+ (Nannochloropsis oceanica)
ATGACAACAACGCGGCTTGTGCGTCCGCCCCGCCTCCTGGGTTTTGGAGG
CCGGCCGTACAATTTCTTCGAGCGGGATGCTCTCCCGCAGAACCTTTCTT
CGGTGCTGGTACGTGATTTTTCCAGGCTATCTATGTAATCTGCCTCGCAT
TCTCATCCTCTTCTCCCCTTATCTTCTCATGCCACGTCCACATCTTCGTT
CCAGTGGCAGCACACCTGCGCGTGGTCTGGCTTCCGTTGATGCATGGCAC
AACTTTTCATGCTCCATTTTCTTCTCTCTCTCTGCCTCTTCGCATTTTTA
CTATTCATTCCTCCCTTCCTCTCACGTCTCTCTTCCACTCCCCACGCACC
ACATGCAGAAAGGCAAGTTCGCCGCCGTCCTCATGGTTGAAGGCGCGCTC
ATCTTTGGAGACGACCAAGGCCATATCACCTTCACTGATGCCGACCTCCG
CCTCTCCCTCCAACACCGCATCCTATCCCCCCCCCCTCACTTCCTTCCTC
GTCCTATCCTTCCCTCCTGCTTGCCCGCTCCCGGCAATCCCCCCCCCTGA
back to top

Coding sequence (CDS) from alignment at chr11:796984..797533+

>NO11G02510.1 ID=NO11G02510.1|Name=NO11G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at chr11:796984..797533+ (Nannochloropsis oceanica)
ATGACAACAACGCGGCTTGTGCGTCCGCCCCGCCTCCTGGGTTTTGGAGG
CCGGCCGTACAATTTCTTCGAGCGGGATGCTCTCCCGCAGAACCTTTCTT
CGGTGCTGAAAGGCAAGTTCGCCGCCGTCCTCATGGTTGAAGGCGCGCTC
ATCTTTGGAGACGACCAAGGCCATATCACCTTCACTGATGCCGACCTCCG
CCTCTCCCTCCAACACCGCATCCTATCCCCCCCCCCTCACTTCCTTCCTC
GTCCTATCCTTCCCTCCTGCTTGCCCGCTCCCGGCAATCCCCCCCCCTGA
back to top
Synonyms
Publications