NO11G02000.1, NO11G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02000.1
Unique NameNO11G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length711
Alignment locationchr11:644517..645227 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:644517..645227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02000.1 vs.
Match: EWM25004.1 (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 410.6 bits (1054), Expect = 3.300e-111
Identity = 193/234 (82.48%), Postives = 212/234 (90.60%), Query Frame = 0 
Query:    1 MCHSCKCLIGPSMLASDLSCMAAEAQKVVAGGADYLHLDVMDGHFVPNITWGAPVIKHLRKHCPGVFFDCHMMVSNPEQWVEEIKDAGGDQYTFHLESTKDPAALIKQILASGMKVGIALRPGTPVKDVLPWVDLVDMVLIMTVEPGFGGQKFKADMMPKVALLREKYPEKDIGVDGGLGPSTIEAAADAGANMIVAGSSVFKSPAPAQVIATLRRAVERLGNGKKEEELTPLP 235
            MCH CKCLIGPSMLASDLSCMA EA+KV+AGGADYLHLDVMDGHFVPNITWG PVIKHLRKHCP +FFDCHMMVSNPEQWV+EIKDAGGDQYTFHLE+ +DPA LI+QI A GM+VG+ALRPGTP++D LPWVD VD+VL+MTVEPGFGGQKF ADMMPKVA LR K PEKDI VDGGLGP+T++AAA AGANMIVAGSSVF S  PA+VIA LRR+VE+LGNGK EEELT LP
Sbjct:    1 MCHGCKCLIGPSMLASDLSCMADEAKKVIAGGADYLHLDVMDGHFVPNITWGPPVIKHLRKHCPDIFFDCHMMVSNPEQWVQEIKDAGGDQYTFHLEAARDPAGLIEQIKAIGMRVGMALRPGTPIEDALPWVDSVDVVLVMTVEPGFGGQKFMADMMPKVAYLRAKCPEKDIEVDGGLGPATVDAAARAGANMIVAGSSVFNSEVPAKVIAALRRSVEKLGNGKSEEELTQLP 234
The following BLAST results are available for this feature:
BLAST of NO11G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25004.13.300e-11182.48ribulose-phosphate 3-epimerase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02000NO11G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02000.1NO11G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02000.1.cds1NO11G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02000.1 ID=NO11G02000.1|Name=NO11G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
ATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAGCCAGCGA
CTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGTGGCGCAG
ACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAACATTACA
TGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTGGCGTTTT
TTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTGGAGGAAA
TCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATCTACCAAG
GACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGAAGGTCGG
TATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCCTGGGTTG
ATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTTTGGGGGG
CAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCCGGGAAAA
ATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCTTCGACTA
TCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGGGAGCTCC
GTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGCGAAGGGC
TGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACGCCCTTGC
CTCCGGCATAA
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protein sequence of NO11G02000.1

>NO11G02000.1-protein ID=NO11G02000.1-protein|Name=NO11G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MCHSCKCLIGPSMLASDLSCMAAEAQKVVAGGADYLHLDVMDGHFVPNIT
WGAPVIKHLRKHCPGVFFDCHMMVSNPEQWVEEIKDAGGDQYTFHLESTK
DPAALIKQILASGMKVGIALRPGTPVKDVLPWVDLVDMVLIMTVEPGFGG
QKFKADMMPKVALLREKYPEKDIGVDGGLGPSTIEAAADAGANMIVAGSS
VFKSPAPAQVIATLRRAVERLGNGKKEEELTPLPPA*
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mRNA from alignment at chr11:644517..645227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02000.1 ID=NO11G02000.1|Name=NO11G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=711bp|location=Sequence derived from alignment at chr11:644517..645227+ (Nannochloropsis oceanica)
ATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAGCCAGCGA
CTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGTGGCGCAG
ACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAACATTACA
TGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTGGCGTTTT
TTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTGGAGGAAA
TCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATCTACCAAG
GACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGAAGGTCGG
TATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCCTGGGTTG
ATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTTTGGGGGG
CAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCCGGGAAAA
ATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCTTCGACTA
TCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGGGAGCTCC
GTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGCGAAGGGC
TGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACGCCCTTGC
CTCCGGCATAA
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Coding sequence (CDS) from alignment at chr11:644517..645227+

>NO11G02000.1 ID=NO11G02000.1|Name=NO11G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr11:644517..645227+ (Nannochloropsis oceanica)
ATGTGCCATAGCTGCAAGTGCCTCATTGGCCCCTCCATGCTAGCCAGCGA
CTTGTCGTGCATGGCCGCTGAGGCGCAAAAGGTGGTGGCGGGTGGCGCAG
ACTACCTGCACTTAGACGTGATGGACGGTCATTTCGTGCCCAACATTACA
TGGGGGGCCCCAGTAATCAAGCACTTAAGAAAGCACTGTCCTGGCGTTTT
TTTTGACTGTCACATGATGGTGAGCAACCCCGAGCAATGGGTGGAGGAAA
TCAAGGATGCCGGTGGAGATCAGTACACATTCCACCTCGAATCTACCAAG
GACCCCGCTGCCCTAATCAAGCAAATTCTGGCCTCAGGGATGAAGGTCGG
TATTGCCCTTCGCCCTGGCACGCCTGTGAAAGATGTATTGCCCTGGGTTG
ATCTTGTGGACATGGTTTTAATCATGACGGTGGAACCGGGCTTTGGGGGG
CAGAAATTTAAGGCGGACATGATGCCCAAGGTGGCGCTTCTCCGGGAAAA
ATACCCAGAAAAAGACATTGGAGTCGATGGAGGGCTCGGACCTTCGACTA
TCGAAGCAGCGGCCGACGCGGGAGCTAATATGATAGTGGCTGGGAGCTCC
GTTTTCAAGAGTCCGGCGCCTGCCCAGGTGATCGCAACGTTGCGAAGGGC
TGTGGAGAGGCTTGGGAATGGGAAAAAGGAGGAGGAGCTGACGCCCTTGC
CTCCGGCATAA
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Synonyms
Publications