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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:614002..616600 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01870.1 vs.
Match: EWM25042.1 (dead-box atp-dependent rna helicase 50-like protein [Nannochloropsis gaditana]) HSP 1 Score: 718.0 bits (1852), Expect = 2.900e-203 Identity = 376/465 (80.86%), Postives = 402/465 (86.45%), Query Frame = 0
Query: 261 EEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGRGRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPRAPPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVLGKQVGLARSIMEGNSKGARVHPVPN 726
EE E +EP EYYEERF GG DE D+ E AARLAD FFFSRK F+EIGAS EA+AA+ S+GI+RPSK+Q IAYPH+L G+SCI+AEQTGSGKTLAYLLPLLQRLR LE G RAPPKSPRVVVLAPTAELAAQVA+VARA+T+H+PLRVCCVTGGKNPRTQGEMLK GVDVLIGTPGRVQYLLEE KVLLG MQALVLDEVDVMFLDDSFDL+VIGAAAPA TQFLFVTATLPV VADQI++EFPGVKKLWGPGLHKIAPQVEEVLVDCSGP EE+RNEET FVRKRDMLVQNLLKH RSLVFCNSIPTCRKVENALRRADR RWQ+LAYHSAVNP DR+K+L IFSSRVERPL+MVCTDRTSRGVDFD A+V+HVVLFDFPRDPSEYVRRVGRTGRAGR GRVTALVLG+QVGLARSIMEGNSKGARVHPVPN
Sbjct: 4 EEGEKEVEPTEYYEERFRE----GGLRTEADEGGLDE-----------ERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2462bp
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA
CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC
GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG
TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC
TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC
GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA
TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG
GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG
AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA
CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC
CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG
GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG
GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT
ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG
CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC
GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC
GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT
GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA
GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA
AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG
GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC
TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG
TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG
ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC
CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC
GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG
GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC
GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG
ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC
AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT
GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC
CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG
GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC
GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA
GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG
AGGGACATGCTTGTCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTT
GGTGTTCTGCAACTCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGC
GGAGGGCCGACCGATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCC
GCAGTGAACCCGGCGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAG
AGTAGAGAGGCCCTTGGTGATGGTATGTACGGATAGAACATCGCGGGGCG
TAGACTTTGATAAGGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCG
CGGGATCCCAGTGAGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGG
AAGGACGGGGCGGGTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGG
CCAGGTCGATTATGGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTG
CCGAACTAAGTGAGGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGA
GACGATCTGAGAAAAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGAC
GATGAAAAAGGAAAAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAG
AAGAAGAAGATTAAAAAAGAAATGGAATTACGACGACGACGAGCACATGT
CGGGGAGTTGGCTGGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGA
AAGTCTCGGGAA back to topprotein sequence of NO11G01870.1 >NO11G01870.1-protein ID=NO11G01870.1-protein|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MTRPAWTGQQCRRRRIGGALTAAAATCLLWANGTVAFTGRACLLSRSKSS
SSSLMLLRNSAALTTAARREGGDGDGGGGRAGGGDRRRTDGGPPRSYGGG
SAGTKRGGSGSDSRGGAGRDPSRKDDFLAPDFDLEDLLKDDGEGVNWKPK
QERPDPPSRRKSSTGGAPADRRGGYGSYGGSAGPRPRPEREGRSVNSNPK
EVSGEEYRQKRRLEGARRRPEGRPQARGDQQTPVWNRREAEEDFGKREFE
FEGEEGRDDEEEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGR
GRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQ
NIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPR
APPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGE
MLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLS
VIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVE
EVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCR
KVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCT
DRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVL
GKQVGLARSIMEGNSKGARVHPVPN* back to topmRNA from alignment at chr11:614002..616600+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2599bp|location=Sequence derived from alignment at chr11:614002..616600+ (Nannochloropsis oceanica)
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA
CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC
GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG
TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC
TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC
GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA
TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG
GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG
AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA
CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC
CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG
GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG
GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT
ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG
CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC
GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC
GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT
GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA
GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA
AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG
GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC
TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG
TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG
ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC
CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC
GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG
GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC
GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG
ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC
AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT
GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC
CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG
GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC
GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA
GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG
AGGGTAAGACTGCGGGAAGACGATAAAAGGGAGGGGAGGGAGGATGTTTG
TTTCTTCGTTGTATTCCCACGAGTCGTCGACGAAAAGGCGCGAATAGCCA
CAAGAACTCATCCTTTCCTTCCTCGGCTACATCACCACAGGACATGCTTG
TCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAAC
TCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCG
ATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGG
CGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCC
TTGGTGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAA
GGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTG
AGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGG
GTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTAT
GGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAAGTGA
GGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGACGATCTGAGAA
AAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGATGAAAAAGGAA
AAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAAGAAGAAGATTA
AAAAAGAAATGGAATTACGACGACGACGAGCACATGTCGGGGAGTTGGCT
GGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAAGTCTCGGGAA back to topCoding sequence (CDS) from alignment at chr11:614002..616600+ >NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at chr11:614002..616600+ (Nannochloropsis oceanica)
ATGACGAGGCCGGCATGGACAGGGCAACAATGTAGAAGAAGACGCATCGG
CGGCGCCCTCACTGCTGCCGCTGCAACTTGCCTATTGTGGGCCAACGGGA
CCGTAGCCTTTACAGGGCGTGCGTGCTTGCTATCCCGGAGCAAGTCGTCG
TCGTCATCGTTGATGCTGCTGCGTAATTCGGCTGCCTTGACAACGGCGGC
CCGCCGGGAGGGTGGGGACGGGGATGGTGGTGGTGGTAGGGCGGGGGGAG
GTGATCGACGCCGGACTGATGGTGGGCCGCCGCGCTCGTATGGCGGCGGT
AGTGCTGGTACCAAGCGTGGCGGTAGTGGAAGTGACAGTAGAGGAGGAGC
CGGACGAGATCCGTCGCGGAAGGATGATTTTCTAGCCCCTGATTTTGACT
TGGAGGACCTGTTGAAGGACGATGGGGAAGGAGTTAACTGGAAACCAAAA
CAAGAACGACCTGACCCGCCTTCGCGTCGGAAAAGCAGCACGGGTGGAGC
ACCTGCAGATCGACGAGGGGGCTATGGAAGTTATGGAGGGAGTGCTGGGC
CGCGCCCTCGTCCAGAAAGGGAAGGACGAAGTGTAAATTCGAACCCGAAG
GAAGTGAGTGGGGAGGAGTACCGTCAGAAGCGACGGCTGGAAGGAGCCCG
TCGTCGGCCTGAGGGAAGGCCGCAAGCGAGGGGGGATCAGCAGACGCCGG
TATGGAATAGGAGGGAGGCGGAGGAGGACTTTGGTAAGCGGGAATTCGAG
TTTGAGGGAGAGGAAGGGCGGGATGACGAGGAGGAGGAGGAGTATGGCCT
GGAGCCGATGGAGTACTATGAGGAGCGTTTTGCTGGGGAGGCGTTTTTTG
GCGGTGAGAACAATAACGAGGACGAGGAGGACGACGATGATGGCGGCAGA
GGGAGAGGAAGGATGGGGAAGAGGGAGGCCGCGGCAAGGCTGGCGGACGA
TTTCTTCTTCAGTCGCAAGGCGTTTGATGAAATTGGAGCGAGCGCCGAGG
CGCAGGCAGCCATGCAGTCTCTGGGAATCTCCCGCCCATCAAAGATTCAA
AATATTGCTTATCCTCACGTATTGGCGGGCACCTCATGCATCCTTGCCGA
GCAAACGGGGTCGGGGAAGACGCTCGCTTACCTACTCCCCCTCCTTCAAC
GGCTGCGTCAGCTGGAGGCCGCCGCAACTGCAGCAGGCGAATCCCCGCGC
GCTCCTCCTAAATCACCACGGGTGGTTGTGTTGGCGCCGACGGCAGAGCT
TGCTGCACAAGTGGCAACGGTTGCAAGGGCGTTGACGAAACATTTACCGT
TGCGGGTGTGTTGTGTTACGGGGGGGAAGAACCCGCGGACGCAGGGAGAG
ATGCTGAAAAGTGGGGTAGATGTCTTGATTGGCACCCCTGGGAGGGTGCA
ATATCTGTTGGAGGAAGGCAAGGTATTGCTGGGGGGGATGCAGGCCTTAG
TCCTTGATGAGGTGGACGTGATGTTTTTGGACGATTCGTTCGATCTTTCA
GTGATTGGTGCTGCTGCTCCTGCTGCTACTCAATTCTTGTTTGTCACAGC
GACCTTGCCCGTGGCGGTGGCGGATCAGATAAGCAAAGAGTTTCCAGGAG
TTAAGAAGTTGTGGGGTCCGGGGCTGCATAAGATCGCGCCTCAGGTGGAG
GAAGTGTTGGTTGATTGTAGCGGGCCAATGGAGGAGGATCGGAATGAGGA
GACGGCATTCGTGCGGAAGAGGGACATGCTTGTCCAGAACCTGCTTAAGC
ACCAAGTGAGGCGCTCCTTGGTGTTCTGCAACTCCATCCCGACCTGTCGA
AAAGTGGAAAATGCCTTGCGGAGGGCCGACCGATCAGGGAACAGGTGGCA
AATCCTGGCTTATCACTCCGCAGTGAACCCGGCGGACCGAGAGAAACATC
TAGGTATTTTCTCTTCAAGAGTAGAGAGGCCCTTGGTGATGGTATGTACG
GATAGAACATCGCGGGGCGTAGACTTTGATAAGGCAAATGTGGAGCACGT
GGTGCTGTTTGATTTCCCGCGGGATCCCAGTGAGTATGTTCGGAGGGTTG
GGAGGACGGGAAGGGCGGGAAGGACGGGGCGGGTGACGGCGTTGGTGTTG
GGAAAACAGGTGGGCTTGGCCAGGTCGATTATGGAGGGAAATAGTAAGGG
GGCACGAGTGCATCCGGTGCCGAACTAA back to top
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