NO11G01840.1, NO11G01840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G01840.1
Unique Name	NO11G01840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2383
Alignment location	chr11:607341..609723 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:607341..609723 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO11G01840.1 vs.
Match: EWM25032.1 (hypothetical protein Naga_100049g9 [Nannochloropsis gaditana])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-39
Identity = 114/249 (45.78%), Postives = 149/249 (59.84%), Query Frame = 0

Query:  396 YGQETW----GEEGGSENGGEGGRPIGYHDVVEVVEQAPAEGVSFCAVCSEMALIEAGQEMEEGDEEDQGKRGSSLPSSIPSSGI-KAMVRECLSAAAACGAVLRVPSFFGPRFVAPAKATPWMLIAPP------QVTAAVGAGGEAGPCASTTTTTTDEDTAAAGVVDFSASRRLALPWLTVPDGRLDRVMLLRALRSLVTALHARPGLAWVEIRSEYLPMFSFSEVLLLLRACMAAGVVRLERVRRK 634
            +GQETW    GEEG  E+  E   P G+ +++ +VE+A  +GVSF  +C +MA I A  +        +GK         P  GI + +VR CL      G VLRVPSFFGPRFV+  +ATPWM++A P       V  A  + G     AS T +  D  +       F A+ RLALPWLT+PDG+L   +LLRALRSL+ A+H  PG++W  +RS+YLPMFSFSEVLLLLRAC+AA V+ L+R   K
Sbjct:    2 WGQETWRPADGEEGEMEDRREERLPEGFAELISLVEKASVDGVSFQDLCRDMASIRAALQEGVTGLNHEGK---------PDDGIGENVVRSCLDEGIRRGHVLRVPSFFGPRFVSRTQATPWMMVAAPGSATDGTVEDADMSPGLDAVSASGTASIPDHSSKRRQKESFPAT-RLALPWLTIPDGQLHVFLLLRALRSLIAAIHTHPGMSWTAVRSDYLPMFSFSEVLLLLRACVAARVLELKRAAWK 240

The following BLAST results are available for this feature:

BLAST of NO11G01840.1 vs.

BLAST of NO11G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25032.1	1.200e-39	45.78	hypothetical protein Naga_100049g9 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G01840	NO11G01840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G01840.1	NO11G01840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G01840.1.cds1	NO11G01840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:607341..609723+
coding sequence from alignment at chr11:607341..609723+

mRNA sequence

>NO11G01840.1 ID=NO11G01840.1|Name=NO11G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp
ATGGAGGCGTACGTGAGACAAAGGGCTGTGTACGGATCGGGGGCGAGAAA
CACCCCCGAGATATTGTTGGAGATTGAGGAGCTGCTTCCTGCTGGTGGGG
CTCGAGGGGGAGGAAGAGGAAGAGGAGCACCAATGGAACTTGCAGAGCTG
GACAGAGGTGGAGCAGAAGAAAAGGGAAAAGAGAACAAGCCGCTTGTCGC
GCATGCGCCACAGATATGGAGTCGTCGCTTCCGGATGCACTGGGTGGAGG
TGGTGAAGAAGACGCGGAGGCCACGAATGGCGTGTTTGCGTCGGTTGGAA
ATGCTCTTGCGTTCCCAGGAGACCTCCACTCGCGTCCTGGCCCGTCTTCG
AGCGGCCGAGAGAGAGGATCCGGATCATTTGAATCGCAAGGCCGGTCGTA
TGGTGTATTACGCGAAGCAGGAGGAGGAGACTCCCTTGTTTTCTGCTGCT
TTGATTAAGGTAAAACAGACGTTGTTGGCCGCGGGCGATTCGTCGGCGGG
AATGGTGGAGGCACGGAGGAGGGCTTTAGACGGTCTGCCTGCCGAGACGA
TTAGAGCGAGTTTTAGGGCCTTGTGGGATGATGGGTGGTTAATTGAGAAT
GCACATGTGGCCTCGGGAGCAGAAGGGGAGGGAGGGAGGGAGGAAGGGGA
GGAAGGAGGGCGGGGTTTGGCAGGGGACGAATGTGGACGGGAAGGAGGAG
GGGAGAGTGAGGGGGAGGGGGCGAGTCAGAGTTCGTGGACGTTTGAGGGA
AAGAGGGCGGGAGGAAGGAGGGGCGCGATCAGGCAGAGGGGCACCTTGAG
CTTGGCGAGACGATTTGAGGATGCCGTTGTGAAGGGAGCTGCGCTTTATC
CCCACGATTTCTTCAGGTCTTTGGGGCCAGCGTATCCGCAGGAATATAAT
GAGGAGGATCTGGTGGCGTTGCCTGCAGGAGCTGTGTGTCGATTGGTGGA
GGGCTTTGGAAGGTCGATTTTGAAAGGAGGGGAGGGGAAGGCGAGAGGAA
GAGAGGGAGGGGGTGACTTTTTTGCGGTGACAATTGCAGCGAGGCGGAAT
GGGCCGCCATTATTTGGGAGGGGGTTTGTGACGGAGCCATTGGGGAGGGT
GAATGTGCTTTCGCTCAAGCCGCAGGCGTTGAAGATAAAGCAGGACTTGC
CTCAAGAGATGCAAGCGGCTGTCAATATCTTGACGTACGGACAAGAGACG
TGGGGGGAGGAGGGAGGGAGCGAGAATGGGGGGGAGGGAGGGAGGCCTAT
AGGATACCATGATGTTGTGGAGGTGGTGGAGCAGGCACCGGCGGAAGGCG
TATCATTCTGTGCTGTGTGTAGTGAGATGGCATTGATAGAAGCGGGCCAG
GAGATGGAGGAGGGGGACGAGGAGGACCAGGGGAAGAGGGGTTCCTCACT
TCCTTCCTCCATCCCCTCCTCAGGTATCAAAGCGATGGTCCGTGAGTGTC
TGTCGGCGGCTGCGGCGTGCGGGGCTGTCTTACGCGTGCCTTCTTTTTTC
GGGCCCCGCTTTGTGGCCCCTGCCAAGGCGACTCCCTGGATGTTAATTGC
GCCCCCACAAGTAACAGCTGCGGTAGGAGCAGGAGGAGAAGCAGGGCCAT
GCGCCTCCACCACCACCACCACTACCGATGAAGATACAGCTGCTGCTGGT
GTTGTGGATTTCTCTGCATCACGGCGTCTGGCCCTTCCCTGGTTGACGGT
ACCTGATGGACGGCTGGATCGCGTAATGCTGTTACGGGCGCTGCGTTCAT
TGGTCACTGCCCTGCATGCCCGTCCAGGCCTGGCATGGGTGGAAATAAGG
TCGGAATACTTGCCCATGTTTTCCTTCTCGGAGGTGTTGTTGTTGCTGCG
GGCCTGTATGGCGGCGGGGGTGGTTAGGTTGGAGAGGGTGAGGAGGAAGG
GAGGGAGGGCGTCCCTCTGGTCTGAGGGGAGGAGGCGTGTGCTGTCGTGT
CCTGGGGCGGAATGGGAGTTTTATGATGATTTGTCTGTGGAGGTGGTGGC
AGGGGAGGTAGGGGGGGGTGAGGGAGATCTATTGGTAGCATTTCCGGAGG
TGCTCTGTATGACGAGATTCGGGTTGTTGGAGGCAGCGATTCGGAAGGCG
GAGCCCACGTCGAGCTTAGTGGAAGTTGCGGTGCCTGACCAGGAGCAGGA
GGAGCAGGGGTAGGAAGGATGGCTTGTAAGTAAAGACAACTGGAAAATTT
TGACTTTCAAGAGACGAGTAAGACAGGAGGAAACGATGGCGTAAGACAAC
CAGAGATTCTGGTCAAAGGAAGATAAATATGAAGAGCGCGTTAGTGGGCG
CTGTGTACAGGCCAAGCGAGTAACTTGCAGAACGGTAACAAGGAGAGGAA
AAAAAATAATTCACTCCCAAAAGGAAAAGTCTT

protein sequence of NO11G01840.1

>NO11G01840.1-protein ID=NO11G01840.1-protein|Name=NO11G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=721bp
MEAYVRQRAVYGSGARNTPEILLEIEELLPAGGARGGGRGRGAPMELAEL
DRGGAEEKGKENKPLVAHAPQIWSRRFRMHWVEVVKKTRRPRMACLRRLE
MLLRSQETSTRVLARLRAAEREDPDHLNRKAGRMVYYAKQEEETPLFSAA
LIKVKQTLLAAGDSSAGMVEARRRALDGLPAETIRASFRALWDDGWLIEN
AHVASGAEGEGGREEGEEGGRGLAGDECGREGGGESEGEGASQSSWTFEG
KRAGGRRGAIRQRGTLSLARRFEDAVVKGAALYPHDFFRSLGPAYPQEYN
EEDLVALPAGAVCRLVEGFGRSILKGGEGKARGREGGGDFFAVTIAARRN
GPPLFGRGFVTEPLGRVNVLSLKPQALKIKQDLPQEMQAAVNILTYGQET
WGEEGGSENGGEGGRPIGYHDVVEVVEQAPAEGVSFCAVCSEMALIEAGQ
EMEEGDEEDQGKRGSSLPSSIPSSGIKAMVRECLSAAAACGAVLRVPSFF
GPRFVAPAKATPWMLIAPPQVTAAVGAGGEAGPCASTTTTTTDEDTAAAG
VVDFSASRRLALPWLTVPDGRLDRVMLLRALRSLVTALHARPGLAWVEIR
SEYLPMFSFSEVLLLLRACMAAGVVRLERVRRKGGRASLWSEGRRRVLSC
PGAEWEFYDDLSVEVVAGEVGGGEGDLLVAFPEVLCMTRFGLLEAAIRKA
EPTSSLVEVAVPDQEQEEQG*

mRNA from alignment at chr11:607341..609723+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G01840.1 ID=NO11G01840.1|Name=NO11G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at chr11:607341..609723+ (Nannochloropsis oceanica)
ATGGAGGCGTACGTGAGACAAAGGGCTGTGTACGGATCGGGGGCGAGAAA
CACCCCCGAGATATTGTTGGAGATTGAGGAGCTGCTTCCTGCTGGTGGGG
CTCGAGGGGGAGGAAGAGGAAGAGGAGCACCAATGGAACTTGCAGAGCTG
GACAGAGGTGGAGCAGAAGAAAAGGGAAAAGAGAACAAGCCGCTTGTCGC
GCATGCGCCACAGATATGGAGTCGTCGCTTCCGGATGCACTGGGTGGAGG
TGGTGAAGAAGACGCGGAGGCCACGAATGGCGTGTTTGCGTCGGTTGGAA
ATGCTCTTGCGTTCCCAGGAGACCTCCACTCGCGTCCTGGCCCGTCTTCG
AGCGGCCGAGAGAGAGGATCCGGATCATTTGAATCGCAAGGCCGGTCGTA
TGGTGTATTACGCGAAGCAGGAGGAGGAGACTCCCTTGTTTTCTGCTGCT
TTGATTAAGGTAAAACAGACGTTGTTGGCCGCGGGCGATTCGTCGGCGGG
AATGGTGGAGGCACGGAGGAGGGCTTTAGACGGTCTGCCTGCCGAGACGA
TTAGAGCGAGTTTTAGGGCCTTGTGGGATGATGGGTGGTTAATTGAGAAT
GCACATGTGGCCTCGGGAGCAGAAGGGGAGGGAGGGAGGGAGGAAGGGGA
GGAAGGAGGGCGGGGTTTGGCAGGGGACGAATGTGGACGGGAAGGAGGAG
GGGAGAGTGAGGGGGAGGGGGCGAGTCAGAGTTCGTGGACGTTTGAGGGA
AAGAGGGCGGGAGGAAGGAGGGGCGCGATCAGGCAGAGGGGCACCTTGAG
CTTGGCGAGACGATTTGAGGATGCCGTTGTGAAGGGAGCTGCGCTTTATC
CCCACGATTTCTTCAGGTCTTTGGGGCCAGCGTATCCGCAGGAATATAAT
GAGGAGGATCTGGTGGCGTTGCCTGCAGGAGCTGTGTGTCGATTGGTGGA
GGGCTTTGGAAGGTCGATTTTGAAAGGAGGGGAGGGGAAGGCGAGAGGAA
GAGAGGGAGGGGGTGACTTTTTTGCGGTGACAATTGCAGCGAGGCGGAAT
GGGCCGCCATTATTTGGGAGGGGGTTTGTGACGGAGCCATTGGGGAGGGT
GAATGTGCTTTCGCTCAAGCCGCAGGCGTTGAAGATAAAGCAGGACTTGC
CTCAAGAGATGCAAGCGGCTGTCAATATCTTGACGTACGGACAAGAGACG
TGGGGGGAGGAGGGAGGGAGCGAGAATGGGGGGGAGGGAGGGAGGCCTAT
AGGATACCATGATGTTGTGGAGGTGGTGGAGCAGGCACCGGCGGAAGGCG
TATCATTCTGTGCTGTGTGTAGTGAGATGGCATTGATAGAAGCGGGCCAG
GAGATGGAGGAGGGGGACGAGGAGGACCAGGGGAAGAGGGGTTCCTCACT
TCCTTCCTCCATCCCCTCCTCAGGTATCAAAGCGATGGTCCGTGAGTGTC
TGTCGGCGGCTGCGGCGTGCGGGGCTGTCTTACGCGTGCCTTCTTTTTTC
GGGCCCCGCTTTGTGGCCCCTGCCAAGGCGACTCCCTGGATGTTAATTGC
GCCCCCACAAGTAACAGCTGCGGTAGGAGCAGGAGGAGAAGCAGGGCCAT
GCGCCTCCACCACCACCACCACTACCGATGAAGATACAGCTGCTGCTGGT
GTTGTGGATTTCTCTGCATCACGGCGTCTGGCCCTTCCCTGGTTGACGGT
ACCTGATGGACGGCTGGATCGCGTAATGCTGTTACGGGCGCTGCGTTCAT
TGGTCACTGCCCTGCATGCCCGTCCAGGCCTGGCATGGGTGGAAATAAGG
TCGGAATACTTGCCCATGTTTTCCTTCTCGGAGGTGTTGTTGTTGCTGCG
GGCCTGTATGGCGGCGGGGGTGGTTAGGTTGGAGAGGGTGAGGAGGAAGG
GAGGGAGGGCGTCCCTCTGGTCTGAGGGGAGGAGGCGTGTGCTGTCGTGT
CCTGGGGCGGAATGGGAGTTTTATGATGATTTGTCTGTGGAGGTGGTGGC
AGGGGAGGTAGGGGGGGGTGAGGGAGATCTATTGGTAGCATTTCCGGAGG
TGCTCTGTATGACGAGATTCGGGTTGTTGGAGGCAGCGATTCGGAAGGCG
GAGCCCACGTCGAGCTTAGTGGAAGTTGCGGTGCCTGACCAGGAGCAGGA
GGAGCAGGGGTAGGAAGGATGGCTTGTAAGTAAAGACAACTGGAAAATTT
TGACTTTCAAGAGACGAGTAAGACAGGAGGAAACGATGGCGTAAGACAAC
CAGAGATTCTGGTCAAAGGAAGATAAATATGAAGAGCGCGTTAGTGGGCG
CTGTGTACAGGCCAAGCGAGTAACTTGCAGAACGGTAACAAGGAGAGGAA
AAAAAATAATTCACTCCCAAAAGGAAAAGTCTT

Coding sequence (CDS) from alignment at chr11:607341..609723+

>NO11G01840.1 ID=NO11G01840.1|Name=NO11G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=2163bp|location=Sequence derived from alignment at chr11:607341..609723+ (Nannochloropsis oceanica)
ATGGAGGCGTACGTGAGACAAAGGGCTGTGTACGGATCGGGGGCGAGAAA
CACCCCCGAGATATTGTTGGAGATTGAGGAGCTGCTTCCTGCTGGTGGGG
CTCGAGGGGGAGGAAGAGGAAGAGGAGCACCAATGGAACTTGCAGAGCTG
GACAGAGGTGGAGCAGAAGAAAAGGGAAAAGAGAACAAGCCGCTTGTCGC
GCATGCGCCACAGATATGGAGTCGTCGCTTCCGGATGCACTGGGTGGAGG
TGGTGAAGAAGACGCGGAGGCCACGAATGGCGTGTTTGCGTCGGTTGGAA
ATGCTCTTGCGTTCCCAGGAGACCTCCACTCGCGTCCTGGCCCGTCTTCG
AGCGGCCGAGAGAGAGGATCCGGATCATTTGAATCGCAAGGCCGGTCGTA
TGGTGTATTACGCGAAGCAGGAGGAGGAGACTCCCTTGTTTTCTGCTGCT
TTGATTAAGGTAAAACAGACGTTGTTGGCCGCGGGCGATTCGTCGGCGGG
AATGGTGGAGGCACGGAGGAGGGCTTTAGACGGTCTGCCTGCCGAGACGA
TTAGAGCGAGTTTTAGGGCCTTGTGGGATGATGGGTGGTTAATTGAGAAT
GCACATGTGGCCTCGGGAGCAGAAGGGGAGGGAGGGAGGGAGGAAGGGGA
GGAAGGAGGGCGGGGTTTGGCAGGGGACGAATGTGGACGGGAAGGAGGAG
GGGAGAGTGAGGGGGAGGGGGCGAGTCAGAGTTCGTGGACGTTTGAGGGA
AAGAGGGCGGGAGGAAGGAGGGGCGCGATCAGGCAGAGGGGCACCTTGAG
CTTGGCGAGACGATTTGAGGATGCCGTTGTGAAGGGAGCTGCGCTTTATC
CCCACGATTTCTTCAGGTCTTTGGGGCCAGCGTATCCGCAGGAATATAAT
GAGGAGGATCTGGTGGCGTTGCCTGCAGGAGCTGTGTGTCGATTGGTGGA
GGGCTTTGGAAGGTCGATTTTGAAAGGAGGGGAGGGGAAGGCGAGAGGAA
GAGAGGGAGGGGGTGACTTTTTTGCGGTGACAATTGCAGCGAGGCGGAAT
GGGCCGCCATTATTTGGGAGGGGGTTTGTGACGGAGCCATTGGGGAGGGT
GAATGTGCTTTCGCTCAAGCCGCAGGCGTTGAAGATAAAGCAGGACTTGC
CTCAAGAGATGCAAGCGGCTGTCAATATCTTGACGTACGGACAAGAGACG
TGGGGGGAGGAGGGAGGGAGCGAGAATGGGGGGGAGGGAGGGAGGCCTAT
AGGATACCATGATGTTGTGGAGGTGGTGGAGCAGGCACCGGCGGAAGGCG
TATCATTCTGTGCTGTGTGTAGTGAGATGGCATTGATAGAAGCGGGCCAG
GAGATGGAGGAGGGGGACGAGGAGGACCAGGGGAAGAGGGGTTCCTCACT
TCCTTCCTCCATCCCCTCCTCAGGTATCAAAGCGATGGTCCGTGAGTGTC
TGTCGGCGGCTGCGGCGTGCGGGGCTGTCTTACGCGTGCCTTCTTTTTTC
GGGCCCCGCTTTGTGGCCCCTGCCAAGGCGACTCCCTGGATGTTAATTGC
GCCCCCACAAGTAACAGCTGCGGTAGGAGCAGGAGGAGAAGCAGGGCCAT
GCGCCTCCACCACCACCACCACTACCGATGAAGATACAGCTGCTGCTGGT
GTTGTGGATTTCTCTGCATCACGGCGTCTGGCCCTTCCCTGGTTGACGGT
ACCTGATGGACGGCTGGATCGCGTAATGCTGTTACGGGCGCTGCGTTCAT
TGGTCACTGCCCTGCATGCCCGTCCAGGCCTGGCATGGGTGGAAATAAGG
TCGGAATACTTGCCCATGTTTTCCTTCTCGGAGGTGTTGTTGTTGCTGCG
GGCCTGTATGGCGGCGGGGGTGGTTAGGTTGGAGAGGGTGAGGAGGAAGG
GAGGGAGGGCGTCCCTCTGGTCTGAGGGGAGGAGGCGTGTGCTGTCGTGT
CCTGGGGCGGAATGGGAGTTTTATGATGATTTGTCTGTGGAGGTGGTGGC
AGGGGAGGTAGGGGGGGGTGAGGGAGATCTATTGGTAGCATTTCCGGAGG
TGCTCTGTATGACGAGATTCGGGTTGTTGGAGGCAGCGATTCGGAAGGCG
GAGCCCACGTCGAGCTTAGTGGAAGTTGCGGTGCCTGACCAGGAGCAGGA
GGAGCAGGGGTAG

Synonyms

Publications