NO11G01840, NO11G01840 (gene) Nannochloropsis oceanica

Overview
NameNO11G01840
Unique NameNO11G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2383
Alignment locationchr11:607341..609723 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:607341..609723 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01840 vs. NCBI_GenBank
Match: EWM25032.1 (hypothetical protein Naga_100049g9 [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 4.700e-36
Identity = 104/249 (41.77%), Postives = 135/249 (54.22%), Query Frame = 0 
Query:  396 YGQETW----GEXXXXXXXXXGGRPIGYHDVVEVVEQAPAEGVSFCAVCSEMALIEAGQEMEEGDEEDQGKRGSSLPSSIPSSGI-KAMVRECLSAAAACGAVLRVPSFFGPRFVAPAKATPWMLIAPP------QVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDFSASRRLALPWLTVPDGRLDRVMLLRALRSLVTALHARPGLAWVEIRSEYLPMFSFSEVLLLLRACMAAGVVRLERVRRK 634
            +GQETW    GE            P G+ +++ +VE+A  +GVSF  +C +MA I A  +        +GK         P  GI + +VR CL      G VLRVPSFFGPRFV+  +ATPWM++A P       V                                F A+ RLALPWLT+PDG+L   +LLRALRSL+ A+H  PG++W  +RS+YLPMFSFSEVLLLLRAC+AA V+ L+R   K
Sbjct:    2 WGQETWRPADGEEGEMEDRREERLPEGFAELISLVEKASVDGVSFQDLCRDMASIRAALQEGVTGLNHEGK---------PDDGIGENVVRSCLDEGIRRGHVLRVPSFFGPRFVSRTQATPWMMVAAPGSATDGTVEDADMSPGLDAVSASGTASIPDHSSKRRQKESFPAT-RLALPWLTIPDGQLHVFLLLRALRSLIAAIHTHPGMSWTAVRSDYLPMFSFSEVLLLLRACVAARVLELKRAAWK 240
The following BLAST results are available for this feature:
BLAST of NO11G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25032.14.700e-3641.77hypothetical protein Naga_100049g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01840.1NO11G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100049g9gene5467Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01840.1NO11G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01840 ID=NO11G01840|Name=NO11G01840|organism=Nannochloropsis oceanica|type=gene|length=2383bp
ATGGAGGCGTACGTGAGACAAAGGGCTGTGTACGGATCGGGGGCGAGAAA
CACCCCCGAGATATTGTTGGAGATTGAGGAGCTGCTTCCTGCTGGTGGGG
CTCGAGGGGGAGGAAGAGGAAGAGGAGCACCAATGGAACTTGCAGAGCTG
GACAGAGGTGGAGCAGAAGAAAAGGGAAAAGAGAACAAGCCGCTTGTCGC
GCATGCGCCACAGATATGGAGTCGTCGCTTCCGGATGCACTGGGTGGAGG
TGGTGAAGAAGACGCGGAGGCCACGAATGGCGTGTTTGCGTCGGTTGGAA
ATGCTCTTGCGTTCCCAGGAGACCTCCACTCGCGTCCTGGCCCGTCTTCG
AGCGGCCGAGAGAGAGGATCCGGATCATTTGAATCGCAAGGCCGGTCGTA
TGGTGTATTACGCGAAGCAGGAGGAGGAGACTCCCTTGTTTTCTGCTGCT
TTGATTAAGGTAAAACAGACGTTGTTGGCCGCGGGCGATTCGTCGGCGGG
AATGGTGGAGGCACGGAGGAGGGCTTTAGACGGTCTGCCTGCCGAGACGA
TTAGAGCGAGTTTTAGGGCCTTGTGGGATGATGGGTGGTTAATTGAGAAT
GCACATGTGGCCTCGGGAGCAGAAGGGGAGGGAGGGAGGGAGGAAGGGGA
GGAAGGAGGGCGGGGTTTGGCAGGGGACGAATGTGGACGGGAAGGAGGAG
GGGAGAGTGAGGGGGAGGGGGCGAGTCAGAGTTCGTGGACGTTTGAGGGA
AAGAGGGCGGGAGGAAGGAGGGGCGCGATCAGGCAGAGGGGCACCTTGAG
CTTGGCGAGACGATTTGAGGATGCCGTTGTGAAGGGAGCTGCGCTTTATC
CCCACGATTTCTTCAGGTCTTTGGGGCCAGCGTATCCGCAGGAATATAAT
GAGGAGGATCTGGTGGCGTTGCCTGCAGGAGCTGTGTGTCGATTGGTGGA
GGGCTTTGGAAGGTCGATTTTGAAAGGAGGGGAGGGGAAGGCGAGAGGAA
GAGAGGGAGGGGGTGACTTTTTTGCGGTGACAATTGCAGCGAGGCGGAAT
GGGCCGCCATTATTTGGGAGGGGGTTTGTGACGGAGCCATTGGGGAGGGT
GAATGTGCTTTCGCTCAAGCCGCAGGCGTTGAAGATAAAGCAGGACTTGC
CTCAAGAGATGCAAGCGGCTGTCAATATCTTGACGTACGGACAAGAGACG
TGGGGGGAGGAGGGAGGGAGCGAGAATGGGGGGGAGGGAGGGAGGCCTAT
AGGATACCATGATGTTGTGGAGGTGGTGGAGCAGGCACCGGCGGAAGGCG
TATCATTCTGTGCTGTGTGTAGTGAGATGGCATTGATAGAAGCGGGCCAG
GAGATGGAGGAGGGGGACGAGGAGGACCAGGGGAAGAGGGGTTCCTCACT
TCCTTCCTCCATCCCCTCCTCAGGTATCAAAGCGATGGTCCGTGAGTGTC
TGTCGGCGGCTGCGGCGTGCGGGGCTGTCTTACGCGTGCCTTCTTTTTTC
GGGCCCCGCTTTGTGGCCCCTGCCAAGGCGACTCCCTGGATGTTAATTGC
GCCCCCACAAGTAACAGCTGCGGTAGGAGCAGGAGGAGAAGCAGGGCCAT
GCGCCTCCACCACCACCACCACTACCGATGAAGATACAGCTGCTGCTGGT
GTTGTGGATTTCTCTGCATCACGGCGTCTGGCCCTTCCCTGGTTGACGGT
ACCTGATGGACGGCTGGATCGCGTAATGCTGTTACGGGCGCTGCGTTCAT
TGGTCACTGCCCTGCATGCCCGTCCAGGCCTGGCATGGGTGGAAATAAGG
TCGGAATACTTGCCCATGTTTTCCTTCTCGGAGGTGTTGTTGTTGCTGCG
GGCCTGTATGGCGGCGGGGGTGGTTAGGTTGGAGAGGGTGAGGAGGAAGG
GAGGGAGGGCGTCCCTCTGGTCTGAGGGGAGGAGGCGTGTGCTGTCGTGT
CCTGGGGCGGAATGGGAGTTTTATGATGATTTGTCTGTGGAGGTGGTGGC
AGGGGAGGTAGGGGGGGGTGAGGGAGATCTATTGGTAGCATTTCCGGAGG
TGCTCTGTATGACGAGATTCGGGTTGTTGGAGGCAGCGATTCGGAAGGCG
GAGCCCACGTCGAGCTTAGTGGAAGTTGCGGTGCCTGACCAGGAGCAGGA
GGAGCAGGGGTAGGAAGGATGGCTTGTAAGTAAAGACAACTGGAAAATTT
TGACTTTCAAGAGACGAGTAAGACAGGAGGAAACGATGGCGTAAGACAAC
CAGAGATTCTGGTCAAAGGAAGATAAATATGAAGAGCGCGTTAGTGGGCG
CTGTGTACAGGCCAAGCGAGTAACTTGCAGAACGGTAACAAGGAGAGGAA
AAAAAATAATTCACTCCCAAAAGGAAAAGTCTT
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protein sequence of NO11G01840.1

>NO11G01840.1-protein ID=NO11G01840.1-protein|Name=NO11G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=721bp
MEAYVRQRAVYGSGARNTPEILLEIEELLPAGGARGGGRGRGAPMELAEL
DRGGAEEKGKENKPLVAHAPQIWSRRFRMHWVEVVKKTRRPRMACLRRLE
MLLRSQETSTRVLARLRAAEREDPDHLNRKAGRMVYYAKQEEETPLFSAA
LIKVKQTLLAAGDSSAGMVEARRRALDGLPAETIRASFRALWDDGWLIEN
AHVASGAEGEGGREEGEEGGRGLAGDECGREGGGESEGEGASQSSWTFEG
KRAGGRRGAIRQRGTLSLARRFEDAVVKGAALYPHDFFRSLGPAYPQEYN
EEDLVALPAGAVCRLVEGFGRSILKGGEGKARGREGGGDFFAVTIAARRN
GPPLFGRGFVTEPLGRVNVLSLKPQALKIKQDLPQEMQAAVNILTYGQET
WGEEGGSENGGEGGRPIGYHDVVEVVEQAPAEGVSFCAVCSEMALIEAGQ
EMEEGDEEDQGKRGSSLPSSIPSSGIKAMVRECLSAAAACGAVLRVPSFF
GPRFVAPAKATPWMLIAPPQVTAAVGAGGEAGPCASTTTTTTDEDTAAAG
VVDFSASRRLALPWLTVPDGRLDRVMLLRALRSLVTALHARPGLAWVEIR
SEYLPMFSFSEVLLLLRACMAAGVVRLERVRRKGGRASLWSEGRRRVLSC
PGAEWEFYDDLSVEVVAGEVGGGEGDLLVAFPEVLCMTRFGLLEAAIRKA
EPTSSLVEVAVPDQEQEEQG*
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Synonyms
Publications