NO11G01280, NO11G01280 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO11G01280 vs. NCBI_GenBank
Match: EWM25132.1 (Chromatin assembly factor 1 subunit A [Nannochloropsis gaditana]) HSP 1 Score: 400.6 bits (1028), Expect = 2.000e-107 Identity = 322/668 (48.20%), Postives = 376/668 (56.29%), Query Frame = 0
Query: 716 LDVKQPAISAFFSKAKTPILESAQTAAGGLLMGVGGSSLPLNGL----SATTAAAALAGLGGDAGGEVTATEVAIALEAANAAKVAAMDAVFKAGPMDREELLKDLRERGKASLSAPRNPKHKPHRFQTVHVTVTHKAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSRDVKPRRFWGKSKFLDYGYDSEEDWEEGEEDGDGENLSVTAENDREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERGFVRLGLHFFDVDFEAERPIVDERIRPALAGYRVVCTQAGGFPIKLPYFGAPVDESVVTVKDGGAVTPTGSPKTSPSRKGKKKAGAADGEGSCGGAAAGLEGGDVKAADVKPGRGPKTVDAALVPELLKLVEGSTLGKDKLIDAFLATHPGAASKLQIKALIESSAEKQKCTVGSACGKMLWVVKQELLDQFALQRYQPPPAPVPAVSADAVGIASAVPSVSAGTAVCTTPATKKRKAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGATV---VEASEEVEIVAKEPPVKKARKSVPAKAIKDVTKGTPTLTKFWGKDGGHTADENSSQKSNHVVAFSRASIPSFPSSPQKDAKVSAEE 1377
LDVKQPAISAFF KAK P L++AQ G L+ + G S L GL + T A + G G+ GG ++ ++AI AAKV MDA+ K GPMDREELLKDLR RGK +L PRNPKHK HRFQTVHVTVTH+AAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSR+V+PR FWGKSK LDY XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+RGFVR+G+HFFD +FEAERPIVDERIRPALA RV+ TQ G PIKLPYFGAP +E V GG GS T+P ++G+ K E S K RG K ++ ALVPELLK+VEGS LGKDK+ ++FL HP AASK Q++ LIE SA+K G+ GK W VKQEL+DQ+ LQRY PP AP P V A+ V G A +KRKA P S AT E + V K+ P K+ARK+ KD KG P LTKF+ K + + + S + S P SP ++++E+
Sbjct: 84 LDVKQPAISAFF-KAKAPALDTAQKVHPGRLVSLSGPSTLLGGLLPGDAKGTPGAKMGGETGEDGGGISDVQMAI------AAKVEIMDAILKKGPMDREELLKDLRLRGKTALCTPRNPKHKAHRFQTVHVTVTHRAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSREVRPRHFWGKSKLLDY-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCSEDRGFVRVGVHFFDANFEAERPIVDERIRPALADLRVIPTQPGSLPIKLPYFGAPAEEG--EVNPGGMGAVVGSSDTTP-QQGESKGDETQEEKS----XXXXXXXXXXXXXXKAARGSKALEGALVPELLKMVEGSRLGKDKITESFLRDHPKAASKAQVRTLIEKSADKVTGGKGTTAGKAFWAVKQELIDQYQLQRYHPPSAPTPPVDKTTGSKANGVGCKGGG-----AKAPRKRKANP---------------------SDIPTGTAHDSAATPPTAVSDSESVPLEGAPVCSGRDSKATAQGNAEGNASGCDVLKDHPCKRARKAGTGGGGKDALKGVPVLTKFFVKSAEAGSGQMVPESSEVLQRLS-------PLSPACTVEIASEK 703
BLAST of NO11G01280 vs. NCBI_GenBank
Match: KFM69809.1 (Chromatin assembly factor 1 subunit A, partial [Stegodyphus mimosarum]) HSP 1 Score: 75.1 bits (183), Expect = 1.900e-9 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0
Query: 864 EEKRLWNAMKFLSFAEDVRPPYYGTWSRRSRDVKPRRFWGKSKFLDYGYDSEEDWEEGEEDGDGENLSVTAENDREE 941
EE L K L F+E+VRPPY+GTW ++S++V+PR +G+ LDY DS+E+W+EG G GE+LS T D E
Sbjct: 528 EEAHLTMTAKLLQFSENVRPPYWGTWRKKSKNVRPRHPFGEDSSLDYTVDSDEEWDEG---GPGESLSGTEAEDESE 601
BLAST of NO11G01280 vs. NCBI_GenBank
Match: CBJ33518.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 71.2 bits (173), Expect = 2.800e-8 Identity = 182/503 (36.18%), Postives = 229/503 (45.53%), Query Frame = 0
Query: 486 PEGLIPLLARLVQGSPLPLSQLTRDIIEYLTTELVPCVEELPVDVLKKKIRLLAERKAYGVKPRAAIVAEDLDSEAVWRWEVVQGEFLSNRTEGKNAVKEARSERSNVGKHVKALSHLIKTIRKDPTASAAISQAEEKVLGLERQAEVVKQRKALVQKKEKEKLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVL-DVKQPAISAFFSKAKTPILESAQTAAGGLLMGVGGS--------------------------------------SLPLNGLSATTAAAALAGLGGDAGGEVTATEVAIALEAANAAKVAAMDAVFKAGPMDREELLKDLRERGKASL-------SAPRNPKHKPHRFQTVHVTVTHKAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSRDVKPRRFWGKSK--FLDYGYDSEEDWEEGEEDGDGENLSVTAENDREE 941
PE L PLLARLVQGS PLS L + + + L D + KI L+A+RK YG +PR A++ ED EA+WRWEV + L TE VK ARS+R+N G+ VKAL L + + K P + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + L + + +A AK + SA G L GV GS + K G E L+K RE G+ SL + + + + R + + VTVT GG + +P ++ ++ + N MK L F +D RPPY+GTWS+ S V RR G+ L+Y YDSEEDW EE+ GE+L E + E+
Sbjct: 399 PEHLAPLLARLVQGSASPLSSLAEEACGVMADLIPGQAAGLTADQVSGKISLIAQRKCYGSQPRKAVIPEDTAPEAIWRWEVQLMDLLP--TEKAGVVKSARSDRTNSGRLVKALVRLTEVMAKFPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKISLFNFFRVTDAAPSQDAKENVEPSAM---GVLHAGVNGSRDAAGKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEKRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKVTVTVAGGRGG-FGEPSYSETKQVEVRNRMKLLQFHQDHRPPYWGTWSKSSSQVTGRRPLGRDTKGTLNYDYDSEEDW---EEEAQGEDLLSDEEVEPED 892
BLAST of NO11G01280 vs. NCBI_GenBank
Match: XP_002182657.1 (chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC45944.1 chromatin assembly factor subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 68.6 bits (166), Expect = 1.800e-7 Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query: 832 KHKPHRFQTVHVTVTHKAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSRDVKPRR-FWGKSKFLDYGYDSEEDWEEGEEDGDGENL 931
+H+ + + V VT G AQP FA + + N KFL F EDVRPPY+GTWS+R V + F ++ L+Y YDSE +WEEG +D GE+L
Sbjct: 919 RHRRTKMVNMEVFVTVVPENGAFGAQP-FAEQQTITVPNKYKFLRFHEDVRPPYFGTWSKRGSIVTGKTPFRKETTLLEYDYDSEAEWEEG-DDEIGEDL 1016
BLAST of NO11G01280 vs. NCBI_GenBank
Match: XP_022251799.1 (chromatin assembly factor 1 subunit A-like [Limulus polyphemus]) HSP 1 Score: 68.2 bits (165), Expect = 2.400e-7 Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 0
Query: 784 VAIALEAANAAKVAAMDAVFKAGPMDREELLKDLRER--GKASLSAPRNPKHKPHRFQTVHVTVTHKAAEGGMWAQPEFAVLEEKRLWNAMKFLSFAEDVRPPYYGTWSRRSRDVKPRRFWGKSKFLDYGYDSEEDWEEGEEDGDGENLSVTAE 936
+ + E +A + F + D+E + K L+ + L + K++P F T K E ++ + E + K +K L F E+VRPPY+GTW +RS V PRR + + DY DS+E+WEEG G GE+LS T +
Sbjct: 418 IFLPFEVTKNMVLAPVVPEFSSANFDKENMEKQLQGQVPHMVYLEELKTEKYRP--FWTKKCQKVEKEEEEDIFIESEERKMRPKL---KVKLLQFCENVRPPYWGTWRKRSTSVNPRRPFSRDVIFDYEVDSDEEWEEG---GPGESLSGTED 563 The following BLAST results are available for this feature:
BLAST of NO11G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G01280 ID=NO11G01280|Name=NO11G01280|organism=Nannochloropsis oceanica|type=gene|length=4430bpback to top protein sequence of NO11G01280.1 >NO11G01280.1-protein ID=NO11G01280.1-protein|Name=NO11G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1401bpback to top Synonyms
Publications
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