NO11G00350, NO11G00350 (gene) Nannochloropsis oceanica

Overview
NameNO11G00350
Unique NameNO11G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2377
Alignment locationchr11:155799..158175 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:155799..158175 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: CBJ32624.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28
Identity = 66/102 (64.71%), Postives = 75/102 (73.53%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFG 209
            RGP GLF   DWTC +CGN NW RR  CN C   KP LA   EAREGLGGGFNERQ+R A+   VE+ +DGFDDFGRKK K + D+KAKE AALARL+ +FG
Sbjct:   75 RGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLAATDEAREGLGGGFNERQDR-ASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFG 175
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: XP_024573825.1 (zinc finger protein [Plasmopara halstedii] >CEG37456.1 zinc finger protein [Plasmopara halstedii])

HSP 1 Score: 126.7 bits (317), Expect = 1.500e-25
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:  106 ARGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            +RGPPGLF   DWTC +CGN NW RR  CNMC   KP + G  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++G    +I QP
Sbjct:  301 SRGPPGLFQPGDWTCNTCGNVNWERRSECNMCKSSKPGMVGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGIRKKKVKASKAEREAAALARLQQSYG----AIYQP 407
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: XP_009521647.1 (hypothetical protein PHYSODRAFT_483974 [Phytophthora sojae] >EGZ26359.1 hypothetical protein PHYSODRAFT_483974 [Phytophthora sojae])

HSP 1 Score: 126.3 bits (316), Expect = 2.000e-25
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+  +E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:  250 RGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSAKPGMAGLDEKRDGAGGGFNERQER-VASAKMEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 355
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: GAX96008.1 (katanin p60 ATPase-containing subunit, putative, partial [Pythium insidiosum])

HSP 1 Score: 125.9 bits (315), Expect = 2.600e-25
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:  106 ARGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATF 208
            ARGPPGLF + DWTC  CGN NW RR  CN+C   KP + G  E R+G GGGFNERQER  A+   E+ +DG+DDFG KK+K K  R  +E AALARLK T+
Sbjct:  534 ARGPPGLFKSTDWTCVICGNVNWERRSECNICKSPKPGMPGLDEKRDGAGGGFNERQER-VASAKTEVDEDGYDDFGMKKKKVKASRAEREAAALARLKQTY 634
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: ETI36344.1 (hypothetical protein F443_17532 [Phytophthora parasitica P1569] >ETL29984.1 hypothetical protein L916_16961 [Phytophthora parasitica] >ETP06184.1 hypothetical protein F441_17400 [Phytophthora parasitica CJ01A1] >ETP34284.1 hypothetical protein F442_17386 [Phytophthora parasitica P10297])

HSP 1 Score: 125.6 bits (314), Expect = 3.300e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:   60 RGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 165
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: ETK76571.1 (hypothetical protein L915_17065 [Phytophthora parasitica])

HSP 1 Score: 125.6 bits (314), Expect = 3.300e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:   60 RGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 165
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: ETL83235.1 (hypothetical protein L917_16789 [Phytophthora parasitica])

HSP 1 Score: 125.6 bits (314), Expect = 3.300e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:   60 RGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 165
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: XP_008896017.1 (hypothetical protein PPTG_03964 [Phytophthora parasitica INRA-310] >ETN18326.1 hypothetical protein PPTG_03964 [Phytophthora parasitica INRA-310])

HSP 1 Score: 125.6 bits (314), Expect = 3.300e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:   60 RGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 165
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: ETO65065.1 (hypothetical protein F444_17572 [Phytophthora parasitica P1976])

HSP 1 Score: 125.6 bits (314), Expect = 3.300e-25
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0 
Query:  107 RGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            RGPPGLF   DWTC +CGN NW RR  CNMC   KP +AG  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:   60 RGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSYS----AIYQP 165
[Close]
BLAST of NO11G00350 vs. NCBI_GenBank
Match: XP_002900809.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59616.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 124.8 bits (312), Expect = 5.700e-25
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:  106 ARGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEAREGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAALARLKATFGTESLSIVQP 218
            +RGPPGLF   DWTC +CGN NW RR  CNMC   KP + G  E R+G GGGFNERQER  A+   E+G+DG+DDFG +K+K K  +  +E AALARL+ ++     +I QP
Sbjct:  219 SRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSSKPGMIGLDEKRDGAGGGFNERQER-VASAKTEVGEDGYDDFGMRKKKVKASKTEREAAALARLQQSYS----AIYQP 325
The following BLAST results are available for this feature:
BLAST of NO11G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ32624.11.400e-2864.71conserved unknown protein [Ectocarpus siliculosus][more]
XP_024573825.11.500e-2554.46zinc finger protein [Plasmopara halstedii] >CEG374... [more]
XP_009521647.12.000e-2554.95hypothetical protein PHYSODRAFT_483974 [Phytophtho... [more]
GAX96008.12.600e-2558.82katanin p60 ATPase-containing subunit, putative, p... [more]
ETI36344.13.300e-2554.95hypothetical protein F443_17532 [Phytophthora para... [more]
ETK76571.13.300e-2554.95hypothetical protein L915_17065 [Phytophthora para... [more]
ETL83235.13.300e-2554.95hypothetical protein L917_16789 [Phytophthora para... [more]
XP_008896017.13.300e-2554.95hypothetical protein PPTG_03964 [Phytophthora para... [more]
ETO65065.13.300e-2554.95hypothetical protein F444_17572 [Phytophthora para... [more]
XP_002900809.15.700e-2553.57conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007471NSK007471Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00350.1NO11G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319384gene_10264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00350.1NO11G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00350 ID=NO11G00350|Name=NO11G00350|organism=Nannochloropsis oceanica|type=gene|length=2377bp
CAGCCCCTAGGATGAACGACAGCCCACCCCCTGGTGGAGGTAGAGGAGAC
GGTCGAGGTGCTGGACGGGGTCGTGGCGGCGGCCCTGTGGGTGAGCCACT
GTTTGCTCCCGACAATGACGACTCCACCAGCCTCCCCTCCGGCCCTCCTC
CCTCAAGCAATGGCGGTCGAGGCCGAGGCCGTGGCAATGGCCTACCGTCC
TCTTCTCACGACAACGACGACGCCGAAAGTGGCCGCAGTGGCGGCGGAGG
AAGAGGGCGGGGTCGAGGAGGAGGAGGAGGAGGAGGCGGCCGAGGTGGAG
GGCGTGGAGACAAGGACATTGACTTTGCACGTGGCCCGCCAGGATTGTTT
TCGACGGCCGATTGGACCTGCCCTTCGTGTGGTAATACCAACTGGGCCCG
TCGTGAGATATGCAACATGTGCGGTGGGAAGAAGCCGACCCTGGCAGGCG
CGGGCGAGGCGAGGGAGGGGTTAGGGGGAGGGTTTAATGAACGACAGGAG
AGGGGAGCAGCGACCTTGGGAGTGGAAATTGGGGATGATGGTTTTGATGA
TTTTGGAAGGAAGAAACAGAAGGAGAAGGTGGATAGGAAGGCAAAGGAGG
TGGCAGCATTGGCACGGTTGAAGGCGACGTTTGGgtgcgtagagggaggg
aaggaggaagggagggagggagggaaggagggagggtggactgcccgagt
gggttacggatggaagtgagagaggaagagaatgagagagagaggtgtta
gagcctatgacaaactcgttttcctaataatagtaacgtttgttgcttct
ttctaccgcctttcacctcacagAACGGAATCCCTTAGCATCGTGCAGCC
CAAACTGGCGACCTCCTCCTCCTCCGCGACCTCCGCTTTGTTTCCTGCCT
CCTCCTCCTCCTCCTCGACGGGCCGGAGTGACAGCAGAGGCAGAGATGGA
AGAAGGGAAAGAGGGCGATTTGATGACGCAGAGGAGGAGAGAGGTCGTCC
TGCTGGTGGTGGTAACAATGGTGATGGTTTCTATCGGCGGAAAGAGGTAT
ATAAGGGGGGCAGGCGGCGAGATAGTCGCAGTCGAAGCCGGGAGAGAGAG
CGGGGAGGAGAACGGGAGGGAGGAAGTGGGGGAAAAGGAGAGAGGGGAAG
GTCTCGAGATCGATCGCGTGAAAGAGATTATCGAGGAGAGAGGGGAAGGT
CTCGAGATCGATCACGTGAAAGAGATGATCGAGGGGGAGGGAAGTATGGT
GGGGGAGGAGGAGGGAGGAGGCGGAGCAGGAGCGGGAGCAGGAGCAGGAG
CAGGGAAAGGTATAGCCGGAGTTAAAGAGGAATCAATGATGAGGGCGTTG
ATTGAGCTTTGAAGTGAAGTAAAACCCAACAGTTCCGACAGTTCTAACAT
TGGATGAGGTTAGTTTATGGCTGCTGTGCGTCCATTCTTCCTATTTCTCA
GCTCTTTTCGTCTTCTCTCCCGAACCCCTCATTCTCCCTCCCCTAATCAT
CATACGAACGATGCCGACACGCCACACACCCTGGCGCCGTCGCACTTGTC
TCTCCGCAGCAATCCCAGAATCTGGCCAGTCCTCGATCCTTCCCTCCACT
CCTCGTTCCACAAAATTTACTTTTCTCATTTCCCAAGTATGCACTGGGAT
GGTACCTGCAGGCAGAGGGATGGTTAAGGGAGGGGAGGAAGGGCTGAAGG
CAGATACGGCAGGTGCGGGAAGTTTCAGAGGGAGAGATGGAGGAGGTGGG
AGATAAAGATGGTAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
AGGAAGAGGAGGAAGAGGAGGAGAGTGTGGTAGCGGTGCTTGTAGGTGGC
AGGGAAAGAAGGGGGCTGGTGGGGGAAGATGGGAGGAAGGCAGCGGCGCC
AGCAATAGGCACGACGAGGAAGGGAAGGAAGCCCAGCAGAAAATGGGAAA
GCAACGAGCGTGCTCGTGGCATCTCTGGCCCCAGGGTGTTGTGTTGGAGA
AATGGAGGAGGGAAGGGGGGACGGCAATAACTGATAGGTTGTCAATGGTA
TCTTGGTCGCATCGGCCCCTCAACAAGTATAGGCGCGCACTTAAGCTTGG
TTTCCCTTGTCTGGTTCTACTGGCGGTGCCGGATGAGGAAAGTGTATCAC
ACGTCGTGATACAATGTAATCAAGCCAGCTTCATCTACAAACGGCAAGTT
TTCCGTTGCCACTTTCTTCTTTCCTAATACCGTGTACCGCCTTTTGAGGA
CATCCTCGCGACAAATCCGATTACATAAAAGCTATTCGCCATTAAAATAG
GAAGACATGATGTTTGGGCCTTTCTCGAATGGGCATGTATCAAAGAGATA
CAGAATTAAATTGCGTCAAGTCTAAAT
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protein sequence of NO11G00350.1

>NO11G00350.1-protein ID=NO11G00350.1-protein|Name=NO11G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MNDSPPPGGGRGDGRGAGRGRGGGPVGEPLFAPDNDDSTSLPSGPPPSSN
GGRGRGRGNGLPSSSHDNDDAESGRSGGGGRGRGRGGGGGGGGRGGGRGD
KDIDFARGPPGLFSTADWTCPSCGNTNWARREICNMCGGKKPTLAGAGEA
REGLGGGFNERQERGAATLGVEIGDDGFDDFGRKKQKEKVDRKAKEVAAL
ARLKATFGTESLSIVQPKLATSSSSATSALFPASSSSSSTGRSDSRGRDG
RRERGRFDDAEEERGRPAGGGNNGDGFYRRKEVYKGGRRRDSRSRSRERE
RGGEREGGSGGKGERGRSRDRSRERDYRGERGRSRDRSRERDDRGGGKYG
GGGGGRRRSRSGSRSRSRERYSRS*
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Synonyms
Publications