NO10G02990.1, NO10G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02990.1
Unique NameNO10G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr10:828924..831400 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:828924..831400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02990NO10G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02990.1NO10G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02990.1.cds1NO10G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02990.1.cds2NO10G02990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02990.1.cds3NO10G02990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02990.1.cds4NO10G02990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02990.1 ID=NO10G02990.1|Name=NO10G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
AAATTCTACAGGACGCAAAGCCCTCGAAAGAAAAGTAATTGCTGTAATCG
GACGTATCCAAAACTCTGATCTTTGTGGTGTAAAAGCGCCGGGCACCTTT
TACCAACAACCATCAAGCACCATGAGCGGCTCAGCGGTGGCATCATCATC
CTCCTTCTCTTCACCATTATCCTCCTCATCCTCTCCCTCCTCATTTCTCT
ACTTGCCCCTCGTGACTGCTTGTCTCTTCCTTCTTATGGCGATCTCTTCC
GCAGTAGCTGTGCCTGTGGGGATCACACAGAATTCGAAACGGGAAGACAC
ACTCGGAGCTCAGTTTCCCACTCAAATGACAACCACTGCCAGTATCAAAG
ACACGAGGAGTAGCTTTGCTCGTCTGCTGGACGTATCATTGCCCTTACCT
GAAGACTGGACCTTCGCCCCAGAGCCAAAGACAGTGCATCGAGGCCTGTA
CTCATCCAGCTCTTTCTCGTTTGACTTCGACTCTGCAAGCGTGGCCCCTA
GCTTCAGCTCTGCGCCCACTCTGACACCGCCTGTTTCTCACACGCAATCG
CCTTCAAGCATTTTAACGTCGCTCAATTCTGTATCCTTGTCCCCTTCTAC
GATGACGTCTTCTAACTCACCTAGTCCCGCTCCCGAGGTCCTCTCCGATG
TGTCGAAGGCGCCTTCTGCTAGCCCAGGATTACAGCCCATTACCGAGACT
ATGCCAGTCGTGACCATCGGCATGGACTTGGCCGGGACCCCAGAGCAACA
AGCCAGTACCATTGCGGCCATCTCCAGCTACATTAACCAGATGCTCAGAG
TAAATGTTGCGCCCTCTTTGCCGGCAGGCCCTGTGCCACCACCTTTGCTT
GTCATTCCAGACCCGGCTGAGCCGGGTCAGACCCCTACCGACGGCGGTTT
CACCAATATTGATGACGGAACCGCCATAACTGCACCCGCTACAGGCATGC
CTTCTCCGGCTCCCACATTCTCACCAACAACCAGTAGCACCAATAGTACA
GAATCACCTACTTCTGATCCAATCGGCAACGATACCGTGCCTTCAACTGC
TAGCTTAACCATCGGCGACAGAGCCTTGACTCCCGGTCCGATCGTCGCCG
AGACAGTGGCCGGAACTGTCATCGCGACCATCAGGGACAGCACTAGAAAC
AACGACAGTGGTCGCCGCCGTCGCCTCATCTCAACCATCCGCGTTGTTAC
CCTTGCGCGTTTAAATCCCTCACACAGATTTATGCAATTAGCTAACTCGA
ACTCGTCGTTGTGCGGCGGACAGCACTCTACCACCACTCTGGCACTCGAG
AACTATGGAGACGAAGCTGCCATCCTCGACCTCCTTGCGGCCATCATGAA
TGGAAGTGCGGTCCTACCCGCAGCTGATAACACCACAGACATGTTAGATA
CTATTTGCGCTGTCACAACGACCTTGACCGTGGTACCGTTGGTGCCTTCG
GACGAAGTCGACGATAGTGATAGGGGTGGCCTGGATCTTAAGGGTTTATC
TACCGCCGTAATTATTGGTATTGCAATGGCGGGATCAGTGGCCATGCTCA
TAATCGCATTTTTCATCTATCGCTGCAAGAGGATTATTATAATGACAGTA
GCCATGAGCACAGCGGCCAAATCCAGCTCCTCGATGGCCGTCATGGATGC
ACCTACCCCGCCTCCAAGCCCTGCTATCACGACCACCGCTTCATAGACGA
CTTACAAGAAAGAGCCAATTCCATAAACCGCGCGGCCAGCCTCAAAAACA
TTCAGACTTATAATATTACTTTATAATCATATCTTCACGACAAGTAGCGC
TATTCTCCATGTCTTGTTTTGCAGATCAAAATTGGAAAGTGCTCGTATAG
TAAGGGTCAAGTAAGACAAATTGCACAGATCTTGATTCGTTTTGACGGTT
GAGTCTATCGTCTGCACTGTCAAGAGAAGAAGCAAGGATTACATCTTTCA
AAGTTAAGAGTC
back to top

protein sequence of NO10G02990.1

>NO10G02990.1-protein ID=NO10G02990.1-protein|Name=NO10G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MSGSAVASSSSFSSPLSSSSSPSSFLYLPLVTACLFLLMAISSAVAVPVG
ITQNSKREDTLGAQFPTQMTTTASIKDTRSSFARLLDVSLPLPEDWTFAP
EPKTVHRGLYSSSSFSFDFDSASVAPSFSSAPTLTPPVSHTQSPSSILTS
LNSVSLSPSTMTSSNSPSPAPEVLSDVSKAPSASPGLQPITETMPVVTIG
MDLAGTPEQQASTIAAISSYINQMLRVNVAPSLPAGPVPPPLLVIPDPAE
PGQTPTDGGFTNIDDGTAITAPATGMPSPAPTFSPTTSSTNSTESPTSDP
IGNDTVPSTASLTIGDRALTPGPIVAETVAGTVIATIRDSTRNNDSGRRR
RLISTIRVVTLARLNPSHRFMQLANSNSSLCGGQHSTTTLALENYGDEAA
ILDLLAAIMNGSAVLPAADNTTDMLDTICAVTTTLTVVPLVPSDEVDDSD
RGGLDLKGLSTAVIIGIAMAGSVAMLIIAFFIYRCKRIIIMTVAMSTAAK
SSSSMAVMDAPTPPPSPAITTTAS*
back to top

mRNA from alignment at chr10:828924..831400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02990.1 ID=NO10G02990.1|Name=NO10G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2477bp|location=Sequence derived from alignment at chr10:828924..831400- (Nannochloropsis oceanica)
AAATTCTACAGGACGCAAAGCCCTCGAAAGAAAAGTAATTGCTGTAATCG
GACGTATCCAAAACTCTGATCTTTGTGGTGTAAAAGCGCCGGGCACCTTT
TACCAACAACCATCAAGCACCATGAGCGGCTCAGCGGTGGCATCATCATC
CTCCTTCTCTTCACCATTATCCTCCTCATCCTCTCCCTCCTCATTTCTCT
ACTTGCCCCTCGTGACTGCTTGTCTCTTCCTTCTTATGGCGATCTCTTCC
GCAGTAGCTGTGCCTGTGGGGATCACACAGAATTCGAAACGGGAAGACAC
ACTCGGAGCTCAGGTGAGGATGTAAATTCTCCGTGCATGTAAACGTGTGC
GGGGGGAGCAGCAGCTGATTCTGAGTTAGAAGCTCTACTACGCTGTTTGC
TTCTTCGTTTGCTTATTTGTTGTTGTGGTTCGATTTGAAAATTGTCCGAC
AGGGGATATTCACCATCCACATATGCCTTGTTTTTATTTATCCTTTCTTC
CCCTTCAATCATGCGTATACAGTTTCCCACTCAAATGACAACCACTGCCA
GTATCAAAGACACGAGGAGTAGCTTTGCTCGTCTGCTGGACGTATCATTG
CCCTTACCTGAAGACTGGACCTTCGCCCCAGAGGTATGAGCGAGAATGAG
TGTGACAGGGGGGCTTTTTGCATTGAGGGTCTAGAATACTCATTTCCTTC
CCATGTCACTTTATCGGATAGCCAAAGACAGTGCATCGAGGCCTGTACTC
ATCCAGCTCTTTCTCGTTTGACTTCGACTCTGCAAGCGTGGCCCCTAGCT
TCAGCTCTGCGCCCACTCTGACACCGCCTGTTTCTCACACGCAATCGCCT
TCAAGCATTTTAACGTCGCTCAATTCTGTATCCTTGTCCCCTTCTACGAT
GACGTCTTCTAACTCACCTAGTCCCGCTCCCGAGGTCCTCTCCGATGTGT
CGAAGGTAAGGATCAGAAAGGATAGCGATCTTAAATTGTCAATTTGCGCT
CTTTTAACCTTCACGTCATTGCTGCGAAGTACATGAGTTGATCAGCTTAT
TTTAAGCGCGCGTGCAATTGAACAAAGAGGTCCACGGCACACACACACAC
ACAAATGTAGGCCAAACTCTCACACACACGATTTTTACGCCGCATGTACG
CAATGTCGTGCACACGGTAACAGGCGCCTTCTGCTAGCCCAGGATTACAG
CCCATTACCGAGACTATGCCAGTCGTGACCATCGGCATGGACTTGGCCGG
GACCCCAGAGCAACAAGCCAGTACCATTGCGGCCATCTCCAGCTACATTA
ACCAGATGCTCAGAGTAAATGTTGCGCCCTCTTTGCCGGCAGGCCCTGTG
CCACCACCTTTGCTTGTCATTCCAGACCCGGCTGAGCCGGGTCAGACCCC
TACCGACGGCGGTTTCACCAATATTGATGACGGAACCGCCATAACTGCAC
CCGCTACAGGCATGCCTTCTCCGGCTCCCACATTCTCACCAACAACCAGT
AGCACCAATAGTACAGAATCACCTACTTCTGATCCAATCGGCAACGATAC
CGTGCCTTCAACTGCTAGCTTAACCATCGGCGACAGAGCCTTGACTCCCG
GTCCGATCGTCGCCGAGACAGTGGCCGGAACTGTCATCGCGACCATCAGG
GACAGCACTAGAAACAACGACAGTGGTCGCCGCCGTCGCCTCATCTCAAC
CATCCGCGTTGTTACCCTTGCGCGTTTAAATCCCTCACACAGATTTATGC
AATTAGCTAACTCGAACTCGTCGTTGTGCGGCGGACAGCACTCTACCACC
ACTCTGGCACTCGAGAACTATGGAGACGAAGCTGCCATCCTCGACCTCCT
TGCGGCCATCATGAATGGAAGTGCGGTCCTACCCGCAGCTGATAACACCA
CAGACATGTTAGATACTATTTGCGCTGTCACAACGACCTTGACCGTGGTA
CCGTTGGTGCCTTCGGACGAAGTCGACGATAGTGATAGGGGTGGCCTGGA
TCTTAAGGGTTTATCTACCGCCGTAATTATTGGTATTGCAATGGCGGGAT
CAGTGGCCATGCTCATAATCGCATTTTTCATCTATCGCTGCAAGAGGATT
ATTATAATGACAGTAGCCATGAGCACAGCGGCCAAATCCAGCTCCTCGAT
GGCCGTCATGGATGCACCTACCCCGCCTCCAAGCCCTGCTATCACGACCA
CCGCTTCATAGACGACTTACAAGAAAGAGCCAATTCCATAAACCGCGCGG
CCAGCCTCAAAAACATTCAGACTTATAATATTACTTTATAATCATATCTT
CACGACAAGTAGCGCTATTCTCCATGTCTTGTTTTGCAGATCAAAATTGG
AAAGTGCTCGTATAGTAAGGGTCAAGTAAGACAAATTGCACAGATCTTGA
TTCGTTTTGACGGTTGAGTCTATCGTCTGCACTGTCAAGAGAAGAAGCAA
GGATTACATCTTTCAAAGTTAAGAGTC
back to top

Coding sequence (CDS) from alignment at chr10:828924..831400-

>NO10G02990.1 ID=NO10G02990.1|Name=NO10G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr10:828924..831400- (Nannochloropsis oceanica)
ATGAGCGGCTCAGCGGTGGCATCATCATCCTCCTTCTCTTCACCATTATC
CTCCTCATCCTCTCCCTCCTCATTTCTCTACTTGCCCCTCGTGACTGCTT
GTCTCTTCCTTCTTATGGCGATCTCTTCCGCAGTAGCTGTGCCTGTGGGG
ATCACACAGAATTCGAAACGGGAAGACACACTCGGAGCTCAGTTTCCCAC
TCAAATGACAACCACTGCCAGTATCAAAGACACGAGGAGTAGCTTTGCTC
GTCTGCTGGACGTATCATTGCCCTTACCTGAAGACTGGACCTTCGCCCCA
GAGCCAAAGACAGTGCATCGAGGCCTGTACTCATCCAGCTCTTTCTCGTT
TGACTTCGACTCTGCAAGCGTGGCCCCTAGCTTCAGCTCTGCGCCCACTC
TGACACCGCCTGTTTCTCACACGCAATCGCCTTCAAGCATTTTAACGTCG
CTCAATTCTGTATCCTTGTCCCCTTCTACGATGACGTCTTCTAACTCACC
TAGTCCCGCTCCCGAGGTCCTCTCCGATGTGTCGAAGGCGCCTTCTGCTA
GCCCAGGATTACAGCCCATTACCGAGACTATGCCAGTCGTGACCATCGGC
ATGGACTTGGCCGGGACCCCAGAGCAACAAGCCAGTACCATTGCGGCCAT
CTCCAGCTACATTAACCAGATGCTCAGAGTAAATGTTGCGCCCTCTTTGC
CGGCAGGCCCTGTGCCACCACCTTTGCTTGTCATTCCAGACCCGGCTGAG
CCGGGTCAGACCCCTACCGACGGCGGTTTCACCAATATTGATGACGGAAC
CGCCATAACTGCACCCGCTACAGGCATGCCTTCTCCGGCTCCCACATTCT
CACCAACAACCAGTAGCACCAATAGTACAGAATCACCTACTTCTGATCCA
ATCGGCAACGATACCGTGCCTTCAACTGCTAGCTTAACCATCGGCGACAG
AGCCTTGACTCCCGGTCCGATCGTCGCCGAGACAGTGGCCGGAACTGTCA
TCGCGACCATCAGGGACAGCACTAGAAACAACGACAGTGGTCGCCGCCGT
CGCCTCATCTCAACCATCCGCGTTGTTACCCTTGCGCGTTTAAATCCCTC
ACACAGATTTATGCAATTAGCTAACTCGAACTCGTCGTTGTGCGGCGGAC
AGCACTCTACCACCACTCTGGCACTCGAGAACTATGGAGACGAAGCTGCC
ATCCTCGACCTCCTTGCGGCCATCATGAATGGAAGTGCGGTCCTACCCGC
AGCTGATAACACCACAGACATGTTAGATACTATTTGCGCTGTCACAACGA
CCTTGACCGTGGTACCGTTGGTGCCTTCGGACGAAGTCGACGATAGTGAT
AGGGGTGGCCTGGATCTTAAGGGTTTATCTACCGCCGTAATTATTGGTAT
TGCAATGGCGGGATCAGTGGCCATGCTCATAATCGCATTTTTCATCTATC
GCTGCAAGAGGATTATTATAATGACAGTAGCCATGAGCACAGCGGCCAAA
TCCAGCTCCTCGATGGCCGTCATGGATGCACCTACCCCGCCTCCAAGCCC
TGCTATCACGACCACCGCTTCATAG
back to top
Synonyms
Publications