NO10G02070, NO10G02070 (gene) Nannochloropsis oceanica

Overview
NameNO10G02070
Unique NameNO10G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length539
Alignment locationchr10:571617..572155 -

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Properties
Property NameValue
DescriptionHistone H2A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:571617..572155 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR032454Histone_H2A_C
IPR007125Histone_core_D
IPR002119Histone_H2A
Homology
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: EWM21571.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 242.7 bits (618), Expect = 6.700e-61
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKK-GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY 135
            MAGKGK+GRG GKK GVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKK+RIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKK  KGSASQDY
Sbjct:    1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135
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BLAST of NO10G02070 vs. NCBI_GenBank
Match: EWM29644.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 229.2 bits (583), Expect = 7.700e-57
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGA 127
            MAGKGK GRG+GKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKK+RIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK+K KK A
Sbjct:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKSA 126
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_005643617.1 (histone-fold-containing protein, partial [Coccomyxa subellipsoidea C-169] >EIE19073.1 histone-fold-containing protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 206.5 bits (524), Expect = 5.400e-50
Identity = 108/133 (81.20%), Postives = 123/133 (92.48%), Query Frame = 0 
Query:    3 GKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKK-GAKGSASQDY 135
            GKGK    +GKK VSRS+KAGLQFPVGRI+R+LKKG+YA+RVG+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRH+QLAVRNDEEL+KLLG VTIASGGVLPNIHSVLLPK+KGKK GA G+ SQ++
Sbjct:    3 GKGK----SGKKQVSRSAKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGNVTIASGGVLPNIHSVLLPKTKGKKEGASGAVSQEF 131
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_005848689.1 (hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis] >EFN56587.1 hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis])

HSP 1 Score: 205.3 bits (521), Expect = 1.200e-49
Identity = 107/134 (79.85%), Postives = 122/134 (91.04%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY 135
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK  GKKGA  S SQ++
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKKGA--SVSQEF 131
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_008871808.1 (histone H2A.6 [Aphanomyces invadans] >ETV99252.1 histone H2A.6 [Aphanomyces invadans])

HSP 1 Score: 204.9 bits (520), Expect = 1.600e-49
Identity = 112/144 (77.78%), Postives = 120/144 (83.33%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKG--VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGA--------KGSASQDY 135
            M+GKGKA  G GKKG   SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKKSRIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK     GA        K SASQDY
Sbjct:    1 MSGKGKATGGRGKKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKSAMPGAVTKDGKKSKSSASQDY 144
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_013890509.1 (Histone H2A [Monoraphidium neglectum] >KIY91489.1 Histone H2A [Monoraphidium neglectum])

HSP 1 Score: 204.9 bits (520), Expect = 1.600e-49
Identity = 105/125 (84.00%), Postives = 118/125 (94.40%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKG 126
            M+G+GK    +GKK VSRSSKAGLQFPVGRI+RFLKKGRYA RVG+GAPVYLAAVLEYL AE+LEL+GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGGVTIASGGVLPNIHSVLLPK+KGKKG
Sbjct:    1 MSGRGKG--KSGKKPVSRSSKAGLQFPVGRIARFLKKGRYATRVGAGAPVYLAAVLEYLAAEVLELSGNAARDNKKNRIVPRHIQLAIRNDEELSKLLGGVTIASGGVLPNIHSVLLPKTKGKKG 123
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_002956803.1 (histone H2A [Volvox carteri f. nagariensis] >EFJ42106.1 histone H2A [Volvox carteri f. nagariensis])

HSP 1 Score: 204.5 bits (519), Expect = 2.000e-49
Identity = 107/131 (81.68%), Postives = 122/131 (93.13%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLP-KSKGKKGAKGSA 131
            MAG+GK G+ AGKK VSRSSKAGLQFPVGRI+R+LKKG+YA R+G+GAPVYLAAVLEYLTAE+LELAGNAARDNKK+RI+PRH+QLA+RNDEEL KLLG VTIASGGVLPNIH+VLLP KSKG KG +GS+
Sbjct:    1 MAGRGK-GKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGEEGSS 130
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_002906920.1 (histone H2A [Phytophthora infestans T30-4] >EEY66321.1 histone H2A [Phytophthora infestans T30-4])

HSP 1 Score: 204.1 bits (518), Expect = 2.700e-49
Identity = 112/140 (80.00%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:    1 MAGKGKA---GRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKGAKGSASQDY 135
            M+GKGKA   GRG   KG +RSSKAGLQFPVGR++R+LKKGRYA RVG GAPVY+AAVLEYL AEILELAGNAARD+KK+RIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK   S GKKG K SASQDY
Sbjct:    1 MSGKGKAATGGRGKKGKGSTRSSKAGLQFPVGRVARYLKKGRYAQRVGGGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKKG-KSSASQDY 139
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_013902584.1 (Histone H2AX [Monoraphidium neglectum] >KIZ03565.1 Histone H2AX [Monoraphidium neglectum])

HSP 1 Score: 204.1 bits (518), Expect = 2.700e-49
Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY 135
            M+G+GK    +GKK VSRSSKAGLQFPVGR++R+LKKGRYA RVG+GAPVYLAAVLEYL AE+LEL+GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLGGVTIASGGVLPNIHSVLLPK K KKG  GS SQ++
Sbjct:    1 MSGRGKG--KSGKKPVSRSSKAGLQFPVGRVARYLKKGRYATRVGAGAPVYLAAVLEYLCAEVLELSGNAARDNKKNRIVPRHIQLAIRNDEELSKLLGGVTIASGGVLPNIHSVLLPKDKKKKG--GSVSQEF 130
[Close]
BLAST of NO10G02070 vs. NCBI_GenBank
Match: XP_009516109.1 (hypothetical protein PHYSODRAFT_349254 [Phytophthora sojae] >EGZ28834.1 hypothetical protein PHYSODRAFT_349254 [Phytophthora sojae])

HSP 1 Score: 203.8 bits (517), Expect = 3.500e-49
Identity = 111/140 (79.29%), Postives = 123/140 (87.86%), Query Frame = 0 
Query:    1 MAGKGKA---GRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK---SKGKKGAKGSASQDY 135
            M+GKGKA   GRG   KG +RSSKAGLQFPVGR++R+LKKGRYA R+G GAPVY+AAVLEYL AEILELAGNAARD+KK+RIIPRH+Q+AVRNDEELNKLLG VTIASGGV+PNIHSVLLPK   S GKKG K SASQDY
Sbjct:    1 MSGKGKAATGGRGKKGKGSTRSSKAGLQFPVGRVARYLKKGRYAQRIGGGAPVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQMAVRNDEELNKLLGDVTIASGGVMPNIHSVLLPKKSASAGKKG-KSSASQDY 139
The following BLAST results are available for this feature:
BLAST of NO10G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21571.16.700e-6195.56histone-fold-containing protein [Nannochloropsis g... [more]
EWM29644.17.700e-5795.24histone-fold-containing protein [Nannochloropsis g... [more]
XP_005643617.15.400e-5081.20histone-fold-containing protein, partial [Coccomyx... [more]
XP_005848689.11.200e-4979.85hypothetical protein CHLNCDRAFT_21904 [Chlorella v... [more]
XP_008871808.11.600e-4977.78histone H2A.6 [Aphanomyces invadans] >ETV99252.1 h... [more]
XP_013890509.11.600e-4984.00Histone H2A [Monoraphidium neglectum] >KIY91489.1 ... [more]
XP_002956803.12.000e-4981.68histone H2A [Volvox carteri f. nagariensis] >EFJ42... [more]
XP_002906920.12.700e-4980.00histone H2A [Phytophthora infestans T30-4] >EEY663... [more]
XP_013902584.12.700e-4979.10Histone H2AX [Monoraphidium neglectum] >KIZ03565.1... [more]
XP_009516109.13.500e-4979.29hypothetical protein PHYSODRAFT_349254 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02070.1NO10G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586123gene_4006Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02070.1NO10G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02070 ID=NO10G02070|Name=NO10G02070|organism=Nannochloropsis oceanica|type=gene|length=539bp
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTTTC
CCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCCCCGTG
TATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAGCTGGC
CGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCGCCACG
TCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTGGCGGT
GTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGgtacgtc
ttgttttctgtctacccctctagattgggtgatttcaaccactgtccata
gttcctctattccgtatcttcaagcccatcacttttcacgtccttcccgc
catctattccttctcaccattacacagTGCTCTTGCCCAAGAGCAAGGGC
AAGAAGGGTGCCAAGGGCAGTGCCTCCCAGGATTACTAA
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protein sequence of NO10G02070.1

>NO10G02070.1-protein ID=NO10G02070.1-protein|Name=NO10G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY*
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Synonyms
Publications