NO10G01540, NO10G01540 (gene) Nannochloropsis oceanica

Overview
NameNO10G01540
Unique NameNO10G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2012
Alignment locationchr10:441269..443280 +

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Properties
Property NameValue
Descriptionnuclear factor Y, subunit C9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:441269..443280 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003700DNA-binding transcription factor activity
GO:0005515protein binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR027170NFYC/HAP5_su
IPR003958CBFA_NFYB_domain
Homology
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: EWM25398.1 (ccaat-binding factor complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 1.700e-40
Identity = 83/126 (65.87%), Postives = 105/126 (83.33%), Query Frame = 0 
Query:  208 KPDQLVENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            +P+  +E++V++ W SE  +I  I+PS TD +LQELPLARVKKVMKQD+E+ G  + L+SMEAL+IMAKACELF+ ELTLRGW MT+ N RRTLQR+ LAQA+IKC++FDFLIDIVPRDQA+P  R
Sbjct:  343 RPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVR 468
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: XP_009519327.1 (hypothetical protein PHYSODRAFT_296248 [Phytophthora sojae] >EGZ24039.1 hypothetical protein PHYSODRAFT_296248 [Phytophthora sojae])

HSP 1 Score: 125.9 bits (315), Expect = 3.400e-25
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTRAYT 337
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K DVFDFLIDIVPRD   P  +  T
Sbjct:   37 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKKGPT 148
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: XP_008891703.1 (nuclear transcription factor Y subunit C-1 [Phytophthora parasitica INRA-310] >ETI50142.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica P1569] >ETK90022.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica] >ETL43426.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica] >ETL96609.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica] >ETM49762.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica] >ETN22450.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica INRA-310] >ETO78867.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica P1976] >ETP19921.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica CJ01A1] >ETP47840.1 nuclear transcription factor Y subunit C-1 [Phytophthora parasitica P10297])

HSP 1 Score: 125.2 bits (313), Expect = 5.700e-25
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K DVFDFLIDIVPRD   P  +
Sbjct:   37 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKK 145
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: XP_002901776.1 (nuclear transcription factor Y subunit, putative [Phytophthora infestans T30-4] >EEY57166.1 nuclear transcription factor Y subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 125.2 bits (313), Expect = 5.700e-25
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K DVFDFLIDIVPRD   P  +
Sbjct:   37 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKK 145
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: OWZ22566.1 (Nuclear transcription factor Y subunit [Phytophthora megakarya])

HSP 1 Score: 125.2 bits (313), Expect = 5.700e-25
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K DVFDFLIDIVPRD   P  +
Sbjct:   36 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKK 144
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: POM61199.1 (Nuclear transcription factor Y subunit C-1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 125.2 bits (313), Expect = 5.700e-25
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K DVFDFLIDIVPRD   P  +
Sbjct:   40 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKK 148
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: GAV08438.1 (hypothetical protein RvY_18125 [Ramazzottius varieornatus])

HSP 1 Score: 123.2 bits (308), Expect = 2.200e-24
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 0 
Query:  214 ENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTRAYTRHAP 341
            EN +  FW  +  RIR + P   + R  ELPLAR+KK+MK DE+V      +IS EA V+++KACE+F+ ELTLR W   + N RRTLQR D+A A+ KCD FDFLIDIVPR++  P     T+H+P
Sbjct:   70 ENQLRTFWLRQMERIRAMKPE--EFRHPELPLARIKKIMKLDEDVG-----MISSEAPVVLSKACEMFIEELTLRAWLQVEENKRRTLQRNDVASAVSKCDQFDFLIDIVPREEVRPKPPQPTKHSP 189
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: KUF86780.1 (Nuclear transcription factor Y subunit C-4 [Phytophthora nicotianae])

HSP 1 Score: 122.5 bits (306), Expect = 3.700e-24
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTR 334
            FW  +   I QIDP+A D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+   RRTLQR D+A AI K DVFDFLIDIVPRD   P  +
Sbjct:   37 FWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEEXKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKK 145
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: XP_008616543.1 (hypothetical protein SDRG_12255 [Saprolegnia diclina VS20] >EQC29976.1 hypothetical protein SDRG_12255 [Saprolegnia diclina VS20])

HSP 1 Score: 121.7 bits (304), Expect = 6.300e-24
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRD 327
            FW S+   I QIDP   D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K D FDFLIDIVPR+
Sbjct:   36 FWQSQIHEISQIDPEVQDFKTHQLPLARIKKIMKSDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPRE 137
[Close]
BLAST of NO10G01540 vs. NCBI_GenBank
Match: XP_009844397.1 (nuclear transcription factor Y subunit C-4 [Aphanomyces astaci] >ETV66208.1 nuclear transcription factor Y subunit C-4 [Aphanomyces astaci])

HSP 1 Score: 121.7 bits (304), Expect = 6.300e-24
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 0 
Query:  220 FWASEATRIRQIDPSATDLRLQELPLARVKKVMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRTLQRVDLAQAIIKCDVFDFLIDIVPRD 327
            FW S+   I QIDP   D +  +LPLAR+KK+MK DE+V      +IS EA V+ AKACE+F+LEL+LR W  T+ N RRTLQR D+A AI K D FDFLIDIVPR+
Sbjct:   36 FWQSQIHEISQIDPEVQDFKTHQLPLARIKKIMKSDEDVR-----MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPRE 137
The following BLAST results are available for this feature:
BLAST of NO10G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25398.11.700e-4065.87ccaat-binding factor complex subunit [Nannochlorop... [more]
XP_009519327.13.400e-2556.41hypothetical protein PHYSODRAFT_296248 [Phytophtho... [more]
XP_008891703.15.700e-2557.02nuclear transcription factor Y subunit C-1 [Phytop... [more]
XP_002901776.15.700e-2557.02nuclear transcription factor Y subunit, putative [... [more]
OWZ22566.15.700e-2557.02Nuclear transcription factor Y subunit [Phytophtho... [more]
POM61199.15.700e-2557.02Nuclear transcription factor Y subunit C-1 [Phytop... [more]
GAV08438.12.200e-2451.18hypothetical protein RvY_18125 [Ramazzottius varie... [more]
KUF86780.13.700e-2456.14Nuclear transcription factor Y subunit C-4 [Phytop... [more]
XP_008616543.16.300e-2457.94hypothetical protein SDRG_12255 [Saprolegnia dicli... [more]
XP_009844397.16.300e-2457.94nuclear transcription factor Y subunit C-4 [Aphano... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001026NSK001026Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01540.1NO10G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|423381gene_4061Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g97gene5123Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01540.1NO10G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01540 ID=NO10G01540|Name=NO10G01540|organism=Nannochloropsis oceanica|type=gene|length=2012bp
ATGTCGGAATGCAACCATGCCACTGTAACCGCGCCGATCCCGCCTGCTTC
AAGGGCGTCATCATGCTCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGG
AATCCCACATGTTTGCCTCCAGCGGCACCACCATTTCCACAACTACAACC
AACGGGAACGGCCTCTCCTCCACCGCCGCGTTAATGGCCTATAAAGCCTA
TGAGGTGGAGGCCGAGGATGCAGGCATGGGCAGCGGTATTCAAGGGCTCC
AGTCCTCTTCCGTAATTACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTG
CAGCACCAGGACCACCAACAGCAGCAGCCGCAGGCGCATCAACAACAACA
GCAACAGCAAGCATATCAATACCACTACCAGTTTCCGCCTTACTCATCCC
AACAACAGCATCAGCAGTATCAGCAGTATCAGCAGCAGCAGCTACGACAA
CCTCCTCCACAATACCAGCAGCAACAGCACCATCAACAGCACCAACAACA
GCAGCAGCAACACCAACATCAACCATCCTTTCAGCACTATCAGCAGCAGC
AGTTACCACTTCCACCGCAGCAGCAACAGGAGCCGTCGCCAGACCCTACC
TCAGATTCAATGCAGTACATGAAGCCCGACCAACTAGTAGgtaggtcagt
tcacccactaaaatctatttatttttctctttccttatttttgcatcctc
gataattacctacaatttttattgctgttacgaatagAAAACCTTGTCGA
ACAATTCTGGGCCTCCGAGGCCACCAGAATCCGCCAAATTGACCCCTCGG
CCACGGATCTCCGCCTGCAAGAGCTGCCCCTCGCCCGGGTGAAGAAAGTC
ATGAAACAAGACGAAGAAGTGCATGGGTCCCCTAAAGTCCTTATCAGCAT
GGAAGCCTTAGTAATAATGGCCAAAGCATGTGAGCTCTTTCTGTTGGAAC
TTACTTTAAGAGGATGGCAGATGACAAAGCATAATGCCCGGCGGACCCTG
CAAAGAGTAGATTTGGCCCAAGCAATCATAAAGTGCGATGTGTTTGATTT
TTTGATTGATATTGTCCCGAGGGATCAGGCCATTCCCACGACACGGGCTT
ACACCAGGCATGCCCCTGCAATTGATGCTGTAGCTATTGCTACTGATGAT
GACATAGGGGCAGAAGCGGATGGGAAAGAGGAAGTGGGGGGAAAAGGGAG
GGAGGGGAGAGTGGATGGTGGTGCTACTGCCAGTGGCACAGGGAGTGGAA
TGTGGGATGGGGAGGGAGGAGGGGGGGCGGGGAGGGGAAGTTGTGGAAAA
GAGGGAGTAGAAAGTGGAGGAGGAGGAGGGGGGGGAAGAGGAGGACGAGG
AGGAGGAGGAGGAGGAGAAGGAAGAGGATGGGACGGAGAAGAGGAAGGAG
AGGAGGGGGGGAAGGAGGAGGAGGAGGAGGAGGACGGCGACGAGTTCATT
GAGGAAGAGAAAGAGGTAAAGGGGAGTGGAACTGATTCTGCTTATGGTAG
GGATAGTGAAAAAAGAGGAGAAAGAAGGGGAGGGGGAGTGGTGGAAGTAA
TAGAAGAGATTAGAATGCGGTAAGAAGAAAGGTGGAGAGATGGATGGAGT
GGAGAGGGAGGCATGTAGCACTGTGGGAGGCACAAGGGTAGGACGATGAC
ATTGGCGATGACGACAATGACGACAGCAGAAGGTAGGAAAGACAAATAGA
CTATGCTATGACCAAATATGACAGACAGTAATGCGGGGAAGAGGAGAGAC
GAAGGACTGAGATTGGAAACCAAAAAACAGTCTGGTCCAATACCAGGTAG
CGAAAGCTAGACGCTTGTCATGTCCAGAAGGGAAGGACAGAGGCCGTTCT
ATCTACCTCACACAGCAGCATTTATACATGTAAACATACGCTTAGAAATT
GGAAGTGAGAGGATCAGCGCCAGACGTAGTAATACCTTGATGATTATTAA
ATAAAGCGCACGTGCGTGAAAATAACGAAAGAAATACAAGGAATATTACT
ATAAGCTTATCG
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protein sequence of NO10G01540.1

>NO10G01540.1-protein ID=NO10G01540.1-protein|Name=NO10G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSECNHATVTAPIPPASRASSCSVSPPRGSALRESHMFASSGTTISTTTT
NGNGLSSTAALMAYKAYEVEAEDAGMGSGIQGLQSSSVITPLVASLTSPV
QHQDHQQQQPQAHQQQQQQQAYQYHYQFPPYSSQQQHQQYQQYQQQQLRQ
PPPQYQQQQHHQQHQQQQQQHQHQPSFQHYQQQQLPLPPQQQQEPSPDPT
SDSMQYMKPDQLVENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKK
VMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRT
LQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTRAYTRHAPAIDAVAIATD
DDIGAEADGKEEVGGKGREGRVDGGATASGTGSGMWDGEGGGGAGRGSCG
KEGVESGGGGGGGRGGRGGGGGGEGRGWDGEEEGEEGGKEEEEEEDGDEF
IEEEKEVKGSGTDSAYGRDSEKRGERRGGGVVEVIEEIRMR*
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Synonyms
Publications